FF:11747-123G1: Difference between revisions

Latest revision as of 18:17, 4 June 2020

Name:	mesenchymal precursor cell - adipose, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs12363
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	adipose tissue
dev stage	NA
sex	NA
age	NA
cell type	mesenchymal precursor cell
cell line	NA
company	NA
collaboration	Claudio Schneider LNCIB
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	NA
extraction protocol (Details)	NA

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004787

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12363		CAGE		DRX008545		DRR009417

Accession ID Hg19

Library id		BAM		CTSS
CNhs12363		DRZ000842		DRZ002227

Accession ID Hg38

Library id		BAM		CTSS
CNhs12363		DRZ012192		DRZ013577

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.168
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.0604
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.0229
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.16
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.0279
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.0604
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.668
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.14
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0775
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.0952
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	-0.0103
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0.0604
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.0604
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.108
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.113
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0.51
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.311
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0.53
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.702
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.369
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0.688
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.784
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12363

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.714
MA0003.1	MA0003.1	0.578
MA0004.1	MA0004.1	0.566
MA0006.1	MA0006.1	0.81
MA0007.1	MA0007.1	0.894
MA0009.1	MA0009.1	0.207
MA0014.1	MA0014.1	0.418
MA0017.1	MA0017.1	0.782
MA0018.2	MA0018.2	5.51235e-4
MA0019.1	MA0019.1	0.66
MA0024.1	MA0024.1	0.971
MA0025.1	MA0025.1	0.0315
MA0027.1	MA0027.1	0.978
MA0028.1	MA0028.1	0.155
MA0029.1	MA0029.1	0.375
MA0030.1	MA0030.1	9.97074e-4
MA0031.1	MA0031.1	0.00808
MA0035.2	MA0035.2	0.033
MA0038.1	MA0038.1	0.175
MA0039.2	MA0039.2	0.102
MA0040.1	MA0040.1	0.945
MA0041.1	MA0041.1	0.733
MA0042.1	MA0042.1	0.985
MA0043.1	MA0043.1	0.00277
MA0046.1	MA0046.1	0.297
MA0047.2	MA0047.2	0.605
MA0048.1	MA0048.1	0.0238
MA0050.1	MA0050.1	4.47979e-4
MA0051.1	MA0051.1	0.0481
MA0052.1	MA0052.1	0.0561
MA0055.1	MA0055.1	0.026
MA0057.1	MA0057.1	0.72
MA0058.1	MA0058.1	0.5
MA0059.1	MA0059.1	0.071
MA0060.1	MA0060.1	0.00383
MA0061.1	MA0061.1	0.626
MA0062.2	MA0062.2	0.219
MA0065.2	MA0065.2	0.552
MA0066.1	MA0066.1	0.749
MA0067.1	MA0067.1	0.0293
MA0068.1	MA0068.1	0.227
MA0069.1	MA0069.1	0.29
MA0070.1	MA0070.1	0.38
MA0071.1	MA0071.1	0.371
MA0072.1	MA0072.1	0.719
MA0073.1	MA0073.1	0.704
MA0074.1	MA0074.1	0.197
MA0076.1	MA0076.1	0.333
MA0077.1	MA0077.1	0.137
MA0078.1	MA0078.1	0.87
MA0079.2	MA0079.2	0.274
MA0080.2	MA0080.2	6.04825e-8
MA0081.1	MA0081.1	0.0225
MA0083.1	MA0083.1	0.00285
MA0084.1	MA0084.1	0.254
MA0087.1	MA0087.1	0.977
MA0088.1	MA0088.1	0.0604
MA0090.1	MA0090.1	0.086
MA0091.1	MA0091.1	0.0306
MA0092.1	MA0092.1	0.162
MA0093.1	MA0093.1	0.789
MA0099.2	MA0099.2	1.24311e-4
MA0100.1	MA0100.1	0.984
MA0101.1	MA0101.1	0.0319
MA0102.2	MA0102.2	0.106
MA0103.1	MA0103.1	2.49737e-4
MA0104.2	MA0104.2	0.657
MA0105.1	MA0105.1	0.145
MA0106.1	MA0106.1	0.0523
MA0107.1	MA0107.1	0.0143
MA0108.2	MA0108.2	0.965
MA0111.1	MA0111.1	0.452
MA0112.2	MA0112.2	0.00274
MA0113.1	MA0113.1	0.271
MA0114.1	MA0114.1	0.712
MA0115.1	MA0115.1	0.515
MA0116.1	MA0116.1	0.00825
MA0117.1	MA0117.1	0.989
MA0119.1	MA0119.1	0.0539
MA0122.1	MA0122.1	0.39
MA0124.1	MA0124.1	0.21
MA0125.1	MA0125.1	0.156
MA0131.1	MA0131.1	0.879
MA0135.1	MA0135.1	0.27
MA0136.1	MA0136.1	1.00291e-6
MA0137.2	MA0137.2	0.313
MA0138.2	MA0138.2	0.86
MA0139.1	MA0139.1	0.813
MA0140.1	MA0140.1	0.179
MA0141.1	MA0141.1	0.382
MA0142.1	MA0142.1	0.926
MA0143.1	MA0143.1	0.534
MA0144.1	MA0144.1	0.251
MA0145.1	MA0145.1	0.346
MA0146.1	MA0146.1	0.601
MA0147.1	MA0147.1	0.261
MA0148.1	MA0148.1	0.496
MA0149.1	MA0149.1	0.913
MA0150.1	MA0150.1	0.473
MA0152.1	MA0152.1	8.50119e-4
MA0153.1	MA0153.1	0.807
MA0154.1	MA0154.1	0.195
MA0155.1	MA0155.1	0.818
MA0156.1	MA0156.1	0.00113
MA0157.1	MA0157.1	0.106
MA0159.1	MA0159.1	0.917
MA0160.1	MA0160.1	0.355
MA0162.1	MA0162.1	0.279
MA0163.1	MA0163.1	4.47507e-5
MA0164.1	MA0164.1	0.881
MA0258.1	MA0258.1	0.482
MA0259.1	MA0259.1	0.585

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12363

Novel motif	Logo	P-value
1	1	0.237
10	10	0.0965
100	100	0.973
101	101	0.581
102	102	0.136
103	103	0.112
104	104	0.701
105	105	0.0393
106	106	0.941
107	107	0.38
108	108	0.633
109	109	0.278
11	11	0.228
110	110	0.0365
111	111	0.697
112	112	0.225
113	113	0.00153
114	114	0.256
115	115	0.152
116	116	0.0263
117	117	0.0923
118	118	0.735
119	119	0.904
12	12	0.614
120	120	0.134
121	121	0.683
122	122	0.0169
123	123	6.25455e-4
124	124	0.396
125	125	0.474
126	126	0.859
127	127	0.928
128	128	0.898
129	129	0.948
13	13	0.266
130	130	0.447
131	131	0.542
132	132	0.901
133	133	0.414
134	134	0.226
135	135	0.964
136	136	0.829
137	137	0.757
138	138	0.761
139	139	0.846
14	14	0.0715
140	140	0.97
141	141	0.871
142	142	0.79
143	143	0.303
144	144	0.702
145	145	0.732
146	146	0.776
147	147	0.0635
148	148	0.991
149	149	0.267
15	15	0.675
150	150	0.258
151	151	0.684
152	152	0.288
153	153	0.777
154	154	0.922
155	155	0.0273
156	156	0.364
157	157	0.604
158	158	0.00144
159	159	0.126
16	16	0.0177
160	160	0.463
161	161	0.423
162	162	0.507
163	163	0.973
164	164	0.133
165	165	0.829
166	166	0.511
167	167	0.833
168	168	0.679
169	169	0.00582
17	17	0.391
18	18	0.0276
19	19	0.0106
2	2	0.346
20	20	0.443
21	21	0.0279
22	22	0.293
23	23	0.88
24	24	0.853
25	25	0.518
26	26	0.186
27	27	0.555
28	28	0.339
29	29	0.126
3	3	0.212
30	30	0.49
31	31	0.757
32	32	1.8977e-12
33	33	0.886
34	34	0.512
35	35	0.546
36	36	0.0483
37	37	0.0768
38	38	0.434
39	39	0.115
4	4	0.486
40	40	0.175
41	41	0.221
42	42	0.612
43	43	0.431
44	44	0.482
45	45	0.689
46	46	0.202
47	47	0.528
48	48	0.342
49	49	0.716
5	5	0.857
50	50	0.646
51	51	0.732
52	52	0.606
53	53	0.0533
54	54	0.837
55	55	0.492
56	56	0.948
57	57	0.919
58	58	0.431
59	59	0.0901
6	6	0.214
60	60	0.836
61	61	0.558
62	62	0.719
63	63	0.607
64	64	0.875
65	65	0.704
66	66	0.871
67	67	0.435
68	68	0.32
69	69	0.666
7	7	0.593
70	70	0.784
71	71	0.0347
72	72	0.918
73	73	0.139
74	74	0.142
75	75	0.076
76	76	0.94
77	77	0.00632
78	78	0.103
79	79	0.028
8	8	0.0224
80	80	0.831
81	81	0.396
82	82	0.734
83	83	0.947
84	84	0.822
85	85	0.726
86	86	0.395
87	87	0.109
88	88	0.694
89	89	0.0878
9	9	0.308
90	90	0.824
91	91	0.621
92	92	0.69
93	93	0.359
94	94	0.401
95	95	0.0903
96	96	0.964
97	97	0.654
98	98	0.18
99	99	0.00607

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12363

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000270 mesenchymal precursor cell of adipose

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002570 (mesenchymal stem cell of adipose)

UBERON: Anatomy
0001013 (adipose tissue)
0002384 (connective tissue)
0000479 (tissue)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000270 (mesenchymal precursor cell of adipose)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
 |DRA_sample_Accession=CAGE@SAMD00004787
-|accession_numbers=CAGE;DRX008545;DRR009417;DRZ000842;DRZ002227
+|accession_numbers=CAGE;DRX008545;DRR009417;DRZ000842;DRZ002227;DRZ012192;DRZ013577
 |ancestors_in_anatomy_facet=UBERON:0001013,UBERON:0002384,UBERON:0000479,UBERON:0000061,UBERON:0000465,UBERON:0001062
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000255,CL:0000034,CL:0002570
@@ Line 9: / Line 9: @@
 |created_by=
 |creation_date=
-|data_phase=1
+|data_phase=2
-|datafreeze_phase=1
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr1:170632285..170632309,+!p1@PRRX1!1.72!57.61!PRRX1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.53!33.13!HOXC5;;chr8:25902876..25902936,-!p1@EBF2!1.35!21.34!EBF2;;chr1:170633262..170633285,+!p3@PRRX1!1.31!21.94!PRRX1;;chr15:57511609..57511651,+!p2@TCF12!1.28!30.00!TCF12;;chr1:170633348..170633399,+!p2@PRRX1!1.28!24.63!PRRX1;;chr17:1959369..1959388,+!p2@HIC1!1.27!45.97!HIC1;;chr2:239756671..239756732,+!p1@TWIST2!1.26!54.93!TWIST2;;chr11:46299199..46299233,+!p1@CREB3L1!1.23!80.90!CREB3L1;;chr21:36260773..36260804,-!p7@RUNX1!1.21!20.60!RUNX1;;chr2:239756739..239756755,+!p2@TWIST2!1.19!24.78!TWIST2;;chr10:131762504..131762555,-!p1@EBF3!1.17!13.73!EBF3;;chr7:19157248..19157268,-!p1@TWIST1!1.13!34.78!TWIST1;;chr20:50179368..50179392,-!p2@NFATC2!1.12!15.97!NFATC2;;chr12:54402745..54402788,+!p1@HOXC8!1.05!10.30!HOXC8;;chr12:54393880..54393962,+!p1@HOXC9!1.04!9.85!HOXC9;;chr15:67430351..67430366,+!p10@SMAD3!1.00!8.96!SMAD3;;chr19:45971246..45971265,+!p1@FOSB!0.98!163.58!FOSB;;chr11:46299539..46299620,+!p2@CREB3L1!0.96!14.03!CREB3L1;;chr2:102091566..102091581,-!p1@RFX8!0.96!8.21!RFX8;;chr2:19558373..19558392,-!p1@OSR1!0.95!22.24!OSR1;;chr8:22550982..22550999,-!p1@EGR3!0.94!22.24!EGR3;;chr19:13134772..13134822,+!p2@NFIX!0.94!11.64!NFIX;;chr7:27205106..27205134,-!p2@HOXA9!0.94!7.61!HOXA9;;chr7:27205136..27205164,-!p1@HOXA9!0.94!7.61!HOXA9;;chr14:24837368..24837401,+!p1@NFATC4!0.93!18.06!NFATC4;;chr17:1958388..1958404,+!p1@HIC1!0.92!48.96!HIC1;;chr17:46621146..46621180,-!p10@HOXB2!0.92!7.31!HOXB2;;chr5:137804484..137804498,+!p2@EGR1!0.91!29.55!EGR1;;chr1:170632959..170632987,+!p4@PRRX1!0.91!7.91!PRRX1;;chr16:31076332..31076388,-!p3@ZNF668!0.91!7.16!ZNF668;;chr1:170632250..170632277,+!p7@PRRX1!0.90!6.87!PRRX1;;chr4:174450089..174450153,-!p2@HAND2!0.88!6.57!HAND2;;chr8:49833948..49833973,-!p2@SNAI2!0.86!42.54!SNAI2;;chr5:2751762..2751784,-!p1@IRX2!0.85!6.12!IRX2;;chr3:5021268..5021282,+!p4@BHLHE40!0.84!12.54!BHLHE40;;chr17:46621101..46621143,-!p7@HOXB2!0.84!8.21!HOXB2;;chr4:111558135..111558198,-!p2@PITX2!0.84!5.97!PITX2;;chr8:49833978..49833996,-!p1@SNAI2!0.83!128.06!SNAI2;;chr17:46675420..46675465,-!p3@HOXB6!0.83!6.72!HOXB6;;chr1:44513995..44514031,+!p1@KLF17!0.82!5.67!KLF17;;chr17:46622070..46622109,-!p1@HOXB2!0.81!12.99!HOXB2;;chr10:64576105..64576133,-!p1@EGR2!0.81!11.79!EGR2;;chr6:45296048..45296082,+!p1@RUNX2!0.81!6.42!RUNX2;;chr12:54380404..54380433,+!p3@HOXC10!0.81!5.52!HOXC10;;chr1:170632723..170632739,+!p8@PRRX1!0.81!5.52!PRRX1;;chr2:119604456..119604501,-!p2@EN1!0.81!5.52!EN1;;chr8:77593750..77593757,+!p3@ZFHX4!0.80!5.37!ZFHX4;;chr17:59477233..59477263,+!p1@TBX2!0.79!17.02!TBX2;;chr14:75746722..75746777,+!p2@FOS!0.79!6.87!FOS;;chr11:120107344..120107351,+!p1@POU2F3!0.79!6.42!POU2F3;;chr2:102091144..102091183,-!p2@RFX8!0.79!5.22!RFX8;;chr12:66218598..66218645,+!p2@HMGA2!0.78!25.37!HMGA2;;chr5:158526917..158526932,-!p1@EBF1!0.78!13.43!EBF1;;chr7:19157043..19157088,-!p2@TWIST1!0.78!13.43!TWIST1;;chr2:176994408..176994492,+!p1@HOXD8!0.78!5.07!HOXD8;;chr1:170632310..170632321,+!p15@PRRX1!0.78!5.07!PRRX1;;chr7:14029283..14029311,-!p1@ETV1!0.77!28.51!ETV1;;chr8:99956662..99956684,+!p1@OSR2!0.77!7.76!OSR2;;chr1:170632477..170632506,+!p6@PRRX1!0.77!4.93!PRRX1;;chr4:174451370..174451387,-!p1@HAND2!0.77!4.93!HAND2;;chr12:54380036..54380091,+!p4@HOXC10!0.77!4.93!HOXC10;;chr21:36260295..36260310,-!p3@RUNX1!0.76!8.06!RUNX1;;chr6:1312325..1312340,+!p1@FOXQ1!0.75!7.91!FOXQ1;;chr7:27183291..27183324,-!p1@HOXA5!0.75!4.63!HOXA5;;chr1:170633245..170633256,+!p14@PRRX1!0.75!4.63!PRRX1;;chr12:54394309..54394336,+!p2@HOXC9!0.75!4.63!HOXC9;;chr12:53614115..53614154,-!p1@RARG!0.74!26.27!RARG;;chr1:158979872..158979898,+!p3@IFI16!0.74!15.07!IFI16;;chr19:31840313..31840380,-!p1@TSHZ3!0.74!12.54!TSHZ3;;chr1:170633194..170633205,+!p18@PRRX1!0.74!4.48!PRRX1;;chr9:132427883..132427951,+!p2@PRRX2!0.74!4.48!PRRX2;;chr8:72756267..72756296,-!p4@MSC!0.73!6.72!MSC;;chr18:53068911..53068935,-!p4@TCF4!0.73!5.07!TCF4;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.73!4.33!HOXC5;;chr12:54422217..54422239,+!p3@HOXC6!0.73!4.33!HOXC6;;chr1:170632647..170632659,+!p17@PRRX1!0.73!4.33!PRRX1;;chr17:46688334..46688385,-!p1@HOXB7!0.71!6.27!HOXB7;;chr1:158979792..158979814,+!p2@IFI16!0.70!44.03!IFI16;;chr7:27192185..27192209,-!p1@HOXA3!0.70!4.03!HOXA3;;chr14:75745523..75745537,+!p1@FOS!0.69!538.66!FOS;;chr19:45260775..45260838,+!p5@BCL3!0.69!5.22!BCL3;;chr11:65686732..65686756,+!p2@DRAP1!0.68!18.21!DRAP1;;chr9:16870710..16870763,-!p1@BNC2!0.68!7.01!BNC2;;chr19:31840130..31840160,-!p2@TSHZ3!0.68!6.27!TSHZ3;;chr12:26277817..26277863,-!p2@BHLHE41!0.68!5.37!BHLHE41;;chr20:51588873..51588953,+!p1@TSHZ2!0.68!5.22!TSHZ2;;chr7:137686763..137686784,-!p5@CREB3L2!0.67!6.87!CREB3L2;;chr3:157823517..157823562,-!p1@SHOX2!0.67!4.03!SHOX2;;chr1:170632137..170632172,+!p10@PRRX1!0.67!3.73!PRRX1;;chr17:46682321..46682362,-!p1@HOXB6!0.67!3.73!HOXB6;;chr10:31610110..31610159,+!p2@ZEB1!0.67!3.73!ZEB1;;chr11:65686802..65686818,+!p6@DRAP1!0.66!6.72!DRAP1;;chr10:119303078..119303169,+!p2@EMX2!0.66!3.58!EMX2;;chr12:115121962..115121987,-!p1@TBX3!0.65!34.18!TBX3;;chr7:14028488..14028516,-!p2@ETV1!0.65!3.88!ETV1;;chr15:57511589..57511608,+!p4@TCF12!0.65!3.43!TCF12;;chr15:96874927..96874938,+!p8@NR2F2!0.64!8.06!NR2F2;;chr8:72756063..72756125,-!p1@MSC!0.64!7.46!MSC;;chr15:96874145..96874166,+!p7@NR2F2!0.64!7.01!NR2F2;;chr14:62162285..62162296,+!p3@HIF1A!0.63!19.70!HIF1A;;chr11:65687362..65687436,+!p3@DRAP1!0.63!17.46!DRAP1;;chr17:46687959..46688007,-!p2@HOXB7!0.63!4.78!HOXB7;;chr9:16870659..16870675,-!p2@BNC2!0.63!4.18!BNC2;;chr11:46299443..46299459,+!p4@CREB3L1!0.63!3.28!CREB3L1;;chr12:54402729..54402743,+!p3@HOXC8!0.63!3.28!HOXC8;;chr7:44143925..44143970,+!p1@AEBP1!0.62!85.67!AEBP1;;chr11:65687158..65687216,+!p4@DRAP1!0.62!21.34!DRAP1;;chr1:221052776..221052799,+!p1@HLX!0.62!6.27!HLX;;chr8:72756637..72756664,-!p3@MSC!0.62!3.73!MSC;;chr8:93074803..93074845,-!p1@RUNX1T1!0.62!3.13!RUNX1T1;;chr15:67430381..67430396,+!p21@SMAD3!0.62!3.13!SMAD3;;chr3:141087454..141087465,+!p19@ZBTB38!0.62!3.13!ZBTB38;;chr9:132427972..132428056,+!p1@PRRX2!0.61!4.18!PRRX2;;chr15:96874012..96874042,+!p2@NR2F2!0.60!32.24!NR2F2;;chr21:36260343..36260402,-!p6@RUNX1!0.60!5.22!RUNX1;;chr17:46622114..46622138,-!p4@HOXB2!0.60!4.93!HOXB2;;chr10:131762410..131762436,-!p2@EBF3!0.60!2.99!EBF3;;chr7:27183114..27183138,-!p3@HOXA5!0.60!2.99!HOXA5;;chr1:170632115..170632136,+!p9@PRRX1!0.60!2.99!PRRX1;;chr1:170632762..170632786,+!p13@PRRX1!0.60!2.99!PRRX1;;chr1:170633058..170633084,+!p5@PRRX1!0.60!2.99!PRRX1;;chr17:46621937..46621966,-!p2@HOXB2!0.59!9.10!HOXB2;;chr3:141121847..141121868,+!p5@ZBTB38!0.59!4.78!ZBTB38;;chr10:64134120..64134183,+!p1@ZNF365!0.59!3.58!ZNF365;;chr12:52445218..52445237,+!p1@NR4A1!0.58!44.03!NR4A1;;chr14:62162258..62162269,+!p2@HIF1A!0.58!32.69!HIF1A;;chr10:114710244..114710257,+!p3@TCF7L2!0.58!8.81!TCF7L2;;chr3:5021191..5021202,+!p3@BHLHE40!0.58!8.66!BHLHE40;;chr15:83953397..83953425,-!p1@BNC1!0.58!3.28!BNC1;;chr14:95236440..95236465,-!p1@GSC!0.58!2.84!GSC;;chr17:46621279..46621297,-!p13@HOXB2!0.58!2.84!HOXB2;;chr9:16728161..16728185,-!p4@BNC2!0.58!2.84!BNC2;;chr3:193853927..193853944,+!p1@HES1!0.57!111.49!HES1;;chr5:133450365..133450444,+!p1@TCF7!0.57!14.93!TCF7;;chr18:22932080..22932170,-!p1@ZNF521!0.57!13.73!ZNF521;;chr2:121493492..121493537,+!p2@GLI2!0.57!4.93!GLI2;;chr8:72756667..72756736,-!p2@MSC!0.57!4.63!MSC;;chr15:96876966..96877017,+!p12@NR2F2!0.57!4.18!NR2F2;;chr6:1389789..1389821,+!p1@FOXF2!0.57!4.03!FOXF2;;chr2:66662895..66662907,+!p3@MEIS1!0.57!3.58!MEIS1;;chr9:1050331..1050363,+!p1@DMRT2!0.57!2.69!DMRT2;;chr12:54378923..54378966,+!p1@HOXC10!0.57!2.69!HOXC10;;chr1:119530493..119530572,-!p1@TBX15!0.57!2.69!TBX15;;chr1:170632683..170632696,+!p12@PRRX1!0.57!2.69!PRRX1;;chr17:38256822..38256851,-!p1@NR1D1!0.56!25.52!NR1D1;;chr12:66218255..66218304,+!p3@HMGA2!0.56!8.21!HMGA2;;chr6:85474299..85474324,-!p1@TBX18!0.56!5.22!TBX18;;chr18:19749386..19749404,+!p2@GATA6!0.56!4.03!GATA6;;chr3:21792585..21792625,-!p2@ZNF385D!0.56!2.99!ZNF385D;;chr17:38256799..38256815,-!p3@NR1D1!0.55!5.22!NR1D1;;chr17:46690839..46690884,-!p1@HOXB8!0.55!2.54!HOXB8;;chr2:45236540..45236577,-!p1@SIX2!0.55!2.54!SIX2;;chr5:321810..321877,+!p1@AHRR!0.54!9.55!AHRR;;chr18:19749541..19749557,+!p1@GATA6!0.54!9.40!GATA6;;chr2:121493425..121493474,+!p1@GLI2!0.54!6.27!GLI2;;chr15:96869255..96869291,+!p6@NR2F2!0.54!5.07!NR2F2;;chr3:5021026..5021035,+!p5@BHLHE40!0.54!3.28!BHLHE40;;chr3:12330560..12330579,+!p1@PPARG!0.54!2.99!PPARG;;chr2:102091478..102091490,-!p3@RFX8!0.53!2.39!RFX8;;chr4:111544219..111544240,-!p1@PITX2!0.53!2.39!PITX2;;chr7:1577899..1577943,+!p3@MAFK!0.53!2.39!MAFK;;chr15:96873984..96873999,+!p3@NR2F2!0.52!21.64!NR2F2;;chr12:26277956..26277980,-!p1@BHLHE41!0.52!10.30!BHLHE41;;chr21:36259445..36259519,-!p4@RUNX1!0.52!7.76!RUNX1;;chr11:65687222..65687240,+!p7@DRAP1!0.52!3.13!DRAP1;;chr17:46622205..46622218,-!p3@HOXB2!0.52!2.84!HOXB2;;chr6:144329384..144329405,-!p1@PLAGL1!0.51!33.58!PLAGL1;;chr3:71630980..71631110,-!p3@FOXP1!0.51!9.70!FOXP1;;chr1:200379104..200379128,-!p2@ZNF281!0.51!6.57!ZNF281;;chr19:13134457..13134462,+!p5@NFIX!0.51!4.63!NFIX;;chr18:52969844..52969895,-!p27@TCF4!0.51!2.24!TCF4;;chr19:31840168..31840186,-!p6@TSHZ3!0.51!2.24!TSHZ3;;chr1:170632439..170632465,+!p11@PRRX1!0.51!2.24!PRRX1;;chr1:170632907..170632916,+!p22@PRRX1!0.51!2.24!PRRX1;;chr7:27183263..27183284,-!p2@HOXA5!0.51!2.24!HOXA5;;chr10:119302645..119302712,+!p3@EMX2!0.51!2.24!EMX2;;chr12:54402790..54402805,+!p2@HOXC8!0.51!2.24!HOXC8;;chr9:130966497..130966541,-!p4@CIZ1!0.51!2.24!CIZ1;;chr15:96874244..96874259,+!p5@NR2F2!0.50!6.27!NR2F2;;chr1:164528911..164528940,+!p7@PBX1!0.50!3.58!PBX1;;chr5:137804130..137804156,+!p5@EGR1!0.50!2.39!EGR1;;chr7:44143978..44143989,+!p2@AEBP1!0.49!4.48!AEBP1;;chr6:85473156..85473210,-!p2@TBX18!0.49!2.69!TBX18;;chr7:27196267..27196311,-!p1@HOXA7!0.49!2.09!HOXA7;;chr17:38821373..38821440,-!p1@KRT222,p2@SMARCE1!0.49!2.09!SMARCE1;;chr9:16705069..16705086,-!p3@BNC2!0.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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000034;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000134;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002570
 |ffid_belonging_in_development=CL:0000134
 |fonse_cell_line=
@@ Line 41: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
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+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520adipose%252c%2520donor1.CNhs12363.11747-123G1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520adipose%252c%2520donor1.CNhs12363.11747-123G1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520adipose%252c%2520donor1.CNhs12363.11747-123G1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/mesenchymal%2520precursor%2520cell%2520-%2520adipose%252c%2520donor1.CNhs12363.11747-123G1.hg38.nobarcode.ctss.bed.gz
 |id=FF:11747-123G1
 |is_a=EFO:0002091;;FF:0000270
 |is_obsolete=
 |library_id=CNhs12363
-|library_id_phase_based=1:CNhs12363
+|library_id_phase_based=2:CNhs12363
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11747
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11747
 |name=mesenchymal precursor cell - adipose, donor1
 |namespace=FANTOM5
@@ Line 51: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12363,LSID914,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
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+|refex=http://refex.dbcls.jp/genelist.php?lang
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+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11747-123G1;search_select_hide=table117:FF:11747-123G1
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FF:11747-123G1: Difference between revisions

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Latest revision as of 18:17, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0