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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004679
|DRA_sample_Accession=CAGE@SAMD00004679
|accession_numbers=CAGE;DRX008166;DRR009038;DRZ000463;DRZ001848
|accession_numbers=CAGE;DRX008166;DRR009038;DRZ000463;DRZ001848;DRZ011813;DRZ013198
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
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|microRNAs=
|microRNAs=
|microRNAs_nn=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#cage;sample;11799
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11799
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#cage;sample;11799
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11799
|name=CD14+CD16- Monocytes, donor2
|name=CD14+CD16- Monocytes, donor2
|namespace=
|namespace=
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|profile_rnaseq=
|profile_rnaseq=
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|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 101: Line 101:
|top_motifs=NFIL3:2.43478682076;SPIB:2.35931837514;SPI1:2.14536508969;DMAP1_NCOR{1,2}_SMARC:1.90796939477;CEBPA,B_DDIT3:1.86390059228;ETS1,2:1.83862174065;NANOG{mouse}:1.78439935649;ATF5_CREB3:1.64225631659;IRF1,2:1.62368601414;PAX2:1.56531887868;RUNX1..3:1.55818680696;MAFB:1.50863661119;FOXP3:1.50781248468;HMX1:1.49508468276;FOXN1:1.45328524314;SREBF1,2:1.27827662588;IRF7:1.27613548674;HIF1A:1.26967687863;ELF1,2,4:1.26530993408;HLF:1.18960792809;TGIF1:1.17716747346;EP300:1.15191318736;TLX2:1.12068474492;NFKB1_REL_RELA:1.0874135601;RFX2..5_RFXANK_RFXAP:1.07078421467;CREB1:0.956370526214;ESRRA:0.947588081089;ATF4:0.915267468191;FOXO1,3,4:0.89860299121;FOX{D1,D2}:0.892164994065;NFE2L2:0.855108697543;NFIX:0.837291438295;RXRA_VDR{dimer}:0.791321001349;NKX2-2,8:0.779696388141;FOX{I1,J2}:0.763629974487;TAL1_TCF{3,4,12}:0.761249024446;FOSL2:0.67304290988;NR6A1:0.669731357199;HBP1_HMGB_SSRP1_UBTF:0.638161071888;FOXA2:0.63269431754;HMGA1,2:0.628861724538;BACH2:0.573296175111;NFE2:0.562171897218;ALX1:0.533671032925;FOS_FOS{B,L1}_JUN{B,D}:0.51862108798;BPTF:0.449749863252;FOXD3:0.387697748961;NFE2L1:0.375111852444;CDX1,2,4:0.37389991264;GLI1..3:0.366251819314;FOX{F1,F2,J1}:0.363910208733;ALX4:0.339388273052;ATF2:0.326863555718;NR1H4:0.289312224782;PITX1..3:0.266333267397;TFAP4:0.257610847793;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.239884851525;FOXP1:0.203914872842;OCT4_SOX2{dimer}:0.187157417054;GATA4:0.168070851303;JUN:0.159275580425;ATF6:0.147607742997;STAT2,4,6:0.138786427935;TFCP2:0.123974585615;ZBTB16:0.0931964851392;MYB:0.0855659930072;IKZF2:0.0772763003986;HOXA9_MEIS1:0.0648327741591;NANOG:0.0163384412902;PPARG:-0.00755663591715;POU1F1:-0.0439315635281;EN1,2:-0.0655817971797;STAT5{A,B}:-0.0764208215665;ESR1:-0.108581556652;DBP:-0.115019496818;PAX4:-0.119024658029;FOXQ1:-0.138089353715;HNF4A_NR2F1,2:-0.160150631632;RORA:-0.163646722919;NKX3-1:-0.189729148376;VSX1,2:-0.233218888068;STAT1,3:-0.235573817051;RXR{A,B,G}:-0.238289447762;HES1:-0.26716592721;POU5F1:-0.315637822747;TOPORS:-0.3169086624;T:-0.326479407565;RFX1:-0.327281818898;AHR_ARNT_ARNT2:-0.328638677667;TFAP2{A,C}:-0.334212549728;ZNF148:-0.339808975933;SOX2:-0.347994709701;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.357924444848;GATA6:-0.384467720373;MYFfamily:-0.409415279855;PAX5:-0.420796579629;FOXL1:-0.433984609845;SRF:-0.44028983007;XBP1:-0.444543936724;CRX:-0.45432297992;SPZ1:-0.45951985061;EBF1:-0.46458581051;NHLH1,2:-0.467718413262;MEF2{A,B,C,D}:-0.472616487377;MYOD1:-0.484152389083;REST:-0.485947912931;NKX3-2:-0.518217695842;PRDM1:-0.519645480275;SMAD1..7,9:-0.528008903816;ELK1,4_GABP{A,B1}:-0.528226720803;HNF1A:-0.534826799589;CUX2:-0.56068957896;NKX6-1,2:-0.566684624358;MTF1:-0.572296208794;PAX3,7:-0.575402737151;NR5A1,2:-0.580772317378;PAX8:-0.617363295753;BREu{core}:-0.626264153625;MZF1:-0.650242168159;AIRE:-0.652770659618;ZNF238:-0.655835573335;PAX1,9:-0.659069609482;NFATC1..3:-0.678412503249;ZEB1:-0.697889721461;POU2F1..3:-0.70470900253;TEF:-0.710372692677;PATZ1:-0.71951124219;PRRX1,2:-0.720240843932;GCM1,2:-0.723967426967;YY1:-0.728492341205;SOX5:-0.758433662158;SP1:-0.795273160832;HOX{A5,B5}:-0.801629739596;ARID5B:-0.825609956506;RREB1:-0.835035723638;SOX{8,9,10}:-0.848602989104;PDX1:-0.850984633351;HAND1,2:-0.851004525374;KLF4:-0.875088751755;MTE{core}:-0.925712612516;NKX2-3_NKX2-5:-0.9357752862;NR3C1:-0.951319119792;ZBTB6:-0.968819917366;IKZF1:-0.973304701488;HSF1,2:-0.979796798434;TBX4,5:-0.995156546559;ZFP161:-1.00525262694;ZNF423:-1.01049688375;LEF1_TCF7_TCF7L1,2:-1.01603867397;ZIC1..3:-1.01619679592;MED-1{core}:-1.0198103628;AR:-1.0451639003;HOX{A6,A7,B6,B7}:-1.05379931513;NKX2-1,4:-1.05545514183;LHX3,4:-1.06118744271;SNAI1..3:-1.11772631761;E2F1..5:-1.118971252;MAZ:-1.14545918608;LMO2:-1.1839060353;TBP:-1.19794544734;RBPJ:-1.21152585259;TFAP2B:-1.21483787633;TLX1..3_NFIC{dimer}:-1.25966283313;GTF2I:-1.26224146319;TP53:-1.28215750646;PBX1:-1.28534012862;UFEwm:-1.3079197551;HIC1:-1.31084565502;GZF1:-1.31469830386;ADNP_IRX_SIX_ZHX:-1.31798627698;EGR1..3:-1.32695985595;NRF1:-1.3408414863;NFY{A,B,C}:-1.36800812573;TEAD1:-1.40101322971;GTF2A1,2:-1.40917089247;HOX{A4,D4}:-1.41018094172;FOXM1:-1.41787697988;ONECUT1,2:-1.42381393326;EVI1:-1.47618073853;ZNF143:-1.49317713559;MYBL2:-1.49615718458;PAX6:-1.50284233684;POU6F1:-1.51965387685;XCPE1{core}:-1.5400806495;TFDP1:-1.60664723408;GFI1:-1.61640478951;GFI1B:-1.66553556908;CDC5L:-1.84947635699;bHLH_family:-1.89007879071;SOX17:-1.94798355909;ZNF384:-1.97786255065;POU3F1..4:-2.25478435785
|top_motifs=NFIL3:2.43478682076;SPIB:2.35931837514;SPI1:2.14536508969;DMAP1_NCOR{1,2}_SMARC:1.90796939477;CEBPA,B_DDIT3:1.86390059228;ETS1,2:1.83862174065;NANOG{mouse}:1.78439935649;ATF5_CREB3:1.64225631659;IRF1,2:1.62368601414;PAX2:1.56531887868;RUNX1..3:1.55818680696;MAFB:1.50863661119;FOXP3:1.50781248468;HMX1:1.49508468276;FOXN1:1.45328524314;SREBF1,2:1.27827662588;IRF7:1.27613548674;HIF1A:1.26967687863;ELF1,2,4:1.26530993408;HLF:1.18960792809;TGIF1:1.17716747346;EP300:1.15191318736;TLX2:1.12068474492;NFKB1_REL_RELA:1.0874135601;RFX2..5_RFXANK_RFXAP:1.07078421467;CREB1:0.956370526214;ESRRA:0.947588081089;ATF4:0.915267468191;FOXO1,3,4:0.89860299121;FOX{D1,D2}:0.892164994065;NFE2L2:0.855108697543;NFIX:0.837291438295;RXRA_VDR{dimer}:0.791321001349;NKX2-2,8:0.779696388141;FOX{I1,J2}:0.763629974487;TAL1_TCF{3,4,12}:0.761249024446;FOSL2:0.67304290988;NR6A1:0.669731357199;HBP1_HMGB_SSRP1_UBTF:0.638161071888;FOXA2:0.63269431754;HMGA1,2:0.628861724538;BACH2:0.573296175111;NFE2:0.562171897218;ALX1:0.533671032925;FOS_FOS{B,L1}_JUN{B,D}:0.51862108798;BPTF:0.449749863252;FOXD3:0.387697748961;NFE2L1:0.375111852444;CDX1,2,4:0.37389991264;GLI1..3:0.366251819314;FOX{F1,F2,J1}:0.363910208733;ALX4:0.339388273052;ATF2:0.326863555718;NR1H4:0.289312224782;PITX1..3:0.266333267397;TFAP4:0.257610847793;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.239884851525;FOXP1:0.203914872842;OCT4_SOX2{dimer}:0.187157417054;GATA4:0.168070851303;JUN:0.159275580425;ATF6:0.147607742997;STAT2,4,6:0.138786427935;TFCP2:0.123974585615;ZBTB16:0.0931964851392;MYB:0.0855659930072;IKZF2:0.0772763003986;HOXA9_MEIS1:0.0648327741591;NANOG:0.0163384412902;PPARG:-0.00755663591715;POU1F1:-0.0439315635281;EN1,2:-0.0655817971797;STAT5{A,B}:-0.0764208215665;ESR1:-0.108581556652;DBP:-0.115019496818;PAX4:-0.119024658029;FOXQ1:-0.138089353715;HNF4A_NR2F1,2:-0.160150631632;RORA:-0.163646722919;NKX3-1:-0.189729148376;VSX1,2:-0.233218888068;STAT1,3:-0.235573817051;RXR{A,B,G}:-0.238289447762;HES1:-0.26716592721;POU5F1:-0.315637822747;TOPORS:-0.3169086624;T:-0.326479407565;RFX1:-0.327281818898;AHR_ARNT_ARNT2:-0.328638677667;TFAP2{A,C}:-0.334212549728;ZNF148:-0.339808975933;SOX2:-0.347994709701;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.357924444848;GATA6:-0.384467720373;MYFfamily:-0.409415279855;PAX5:-0.420796579629;FOXL1:-0.433984609845;SRF:-0.44028983007;XBP1:-0.444543936724;CRX:-0.45432297992;SPZ1:-0.45951985061;EBF1:-0.46458581051;NHLH1,2:-0.467718413262;MEF2{A,B,C,D}:-0.472616487377;MYOD1:-0.484152389083;REST:-0.485947912931;NKX3-2:-0.518217695842;PRDM1:-0.519645480275;SMAD1..7,9:-0.528008903816;ELK1,4_GABP{A,B1}:-0.528226720803;HNF1A:-0.534826799589;CUX2:-0.56068957896;NKX6-1,2:-0.566684624358;MTF1:-0.572296208794;PAX3,7:-0.575402737151;NR5A1,2:-0.580772317378;PAX8:-0.617363295753;BREu{core}:-0.626264153625;MZF1:-0.650242168159;AIRE:-0.652770659618;ZNF238:-0.655835573335;PAX1,9:-0.659069609482;NFATC1..3:-0.678412503249;ZEB1:-0.697889721461;POU2F1..3:-0.70470900253;TEF:-0.710372692677;PATZ1:-0.71951124219;PRRX1,2:-0.720240843932;GCM1,2:-0.723967426967;YY1:-0.728492341205;SOX5:-0.758433662158;SP1:-0.795273160832;HOX{A5,B5}:-0.801629739596;ARID5B:-0.825609956506;RREB1:-0.835035723638;SOX{8,9,10}:-0.848602989104;PDX1:-0.850984633351;HAND1,2:-0.851004525374;KLF4:-0.875088751755;MTE{core}:-0.925712612516;NKX2-3_NKX2-5:-0.9357752862;NR3C1:-0.951319119792;ZBTB6:-0.968819917366;IKZF1:-0.973304701488;HSF1,2:-0.979796798434;TBX4,5:-0.995156546559;ZFP161:-1.00525262694;ZNF423:-1.01049688375;LEF1_TCF7_TCF7L1,2:-1.01603867397;ZIC1..3:-1.01619679592;MED-1{core}:-1.0198103628;AR:-1.0451639003;HOX{A6,A7,B6,B7}:-1.05379931513;NKX2-1,4:-1.05545514183;LHX3,4:-1.06118744271;SNAI1..3:-1.11772631761;E2F1..5:-1.118971252;MAZ:-1.14545918608;LMO2:-1.1839060353;TBP:-1.19794544734;RBPJ:-1.21152585259;TFAP2B:-1.21483787633;TLX1..3_NFIC{dimer}:-1.25966283313;GTF2I:-1.26224146319;TP53:-1.28215750646;PBX1:-1.28534012862;UFEwm:-1.3079197551;HIC1:-1.31084565502;GZF1:-1.31469830386;ADNP_IRX_SIX_ZHX:-1.31798627698;EGR1..3:-1.32695985595;NRF1:-1.3408414863;NFY{A,B,C}:-1.36800812573;TEAD1:-1.40101322971;GTF2A1,2:-1.40917089247;HOX{A4,D4}:-1.41018094172;FOXM1:-1.41787697988;ONECUT1,2:-1.42381393326;EVI1:-1.47618073853;ZNF143:-1.49317713559;MYBL2:-1.49615718458;PAX6:-1.50284233684;POU6F1:-1.51965387685;XCPE1{core}:-1.5400806495;TFDP1:-1.60664723408;GFI1:-1.61640478951;GFI1B:-1.66553556908;CDC5L:-1.84947635699;bHLH_family:-1.89007879071;SOX17:-1.94798355909;ZNF384:-1.97786255065;POU3F1..4:-2.25478435785
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11799-124C8;search_select_hide=table117:FF:11799-124C8
}}
}}

Latest revision as of 18:21, 4 June 2020

Name:CD14+CD16- Monocytes, donor2
Species:Human (Homo sapiens)
Library ID:CNhs13216
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueblood
dev stageNA
sexmale
age23
cell typemonocyte
cell lineNA
companyNA
collaborationMichael Rehli (University of Regensberg)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number27
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004679
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13216 CAGE DRX008166 DRR009038
Accession ID Hg19

Library idBAMCTSS
CNhs13216 DRZ000463 DRZ001848
Accession ID Hg38

Library idBAMCTSS
CNhs13216 DRZ011813 DRZ013198
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.135
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.162
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.396
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.114
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.112
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.162
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.162
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.501
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.162
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.162
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0.0608
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.461
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.282
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.244
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.569
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.204
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0.243
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.0306
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.204
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190.0223
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.0585
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.815
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.924
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.544
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.541
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.704
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.393
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.398
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.567
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.243
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.404
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.675
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.422
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340.312
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral1.013
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.0818
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.305
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.846
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0.56
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.492
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0.114
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0.114
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.0668
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.162
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340.279
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0.243
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13216

Jaspar motifP-value
MA0002.24.09245e-10
MA0003.10.111
MA0004.10.853
MA0006.10.854
MA0007.10.77
MA0009.10.21
MA0014.10.642
MA0017.10.0107
MA0018.20.156
MA0019.10.282
MA0024.10.00126
MA0025.10.00344
MA0027.10.978
MA0028.10.942
MA0029.10.169
MA0030.10.326
MA0031.10.805
MA0035.20.317
MA0038.10.109
MA0039.20.644
MA0040.10.153
MA0041.10.589
MA0042.10.298
MA0043.17.75373e-6
MA0046.10.247
MA0047.20.206
MA0048.10.881
MA0050.16.18011e-9
MA0051.14.58173e-4
MA0052.10.661
MA0055.10.714
MA0057.10.607
MA0058.10.685
MA0059.10.617
MA0060.12.46086e-9
MA0061.12.99399e-5
MA0062.20.00651
MA0065.20.0135
MA0066.10.0624
MA0067.15.84643e-4
MA0068.10.928
MA0069.10.891
MA0070.10.00651
MA0071.10.241
MA0072.10.897
MA0073.10.415
MA0074.10.378
MA0076.10.829
MA0077.10.119
MA0078.10.865
MA0079.20.594
MA0080.26.54416e-17
MA0081.11.04644e-4
MA0083.10.323
MA0084.10.615
MA0087.10.492
MA0088.10.621
MA0090.10.0512
MA0091.10.467
MA0092.10.449
MA0093.10.962
MA0099.21.38051e-9
MA0100.10.975
MA0101.13.07648e-4
MA0102.28.92754e-12
MA0103.10.439
MA0104.20.681
MA0105.11.03562e-7
MA0106.10.448
MA0107.16.86641e-5
MA0108.26.29609e-8
MA0111.10.397
MA0112.24.39556e-4
MA0113.10.998
MA0114.10.129
MA0115.10.964
MA0116.11.25275e-4
MA0117.10.225
MA0119.10.364
MA0122.10.827
MA0124.10.345
MA0125.10.183
MA0131.10.985
MA0135.10.337
MA0136.12.62167e-18
MA0137.20.567
MA0138.20.9
MA0139.10.737
MA0140.10.33
MA0141.10.0663
MA0142.10.438
MA0143.10.484
MA0144.10.215
MA0145.10.228
MA0146.10.0395
MA0147.10.773
MA0148.10.956
MA0149.10.0891
MA0150.11.36404e-6
MA0152.10.213
MA0153.10.0183
MA0154.10.00171
MA0155.10.8
MA0156.15.50106e-11
MA0157.10.294
MA0159.10.0397
MA0160.10.0353
MA0162.10.429
MA0163.14.03478e-9
MA0164.10.899
MA0258.10.0111
MA0259.10.744



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13216

Novel motifP-value
10.105
100.0189
1000.979
1010.385
1020.575
1030.214
1040.794
1050.266
1060.00483
1070.354
1080.706
1090.0652
110.116
1100.288
1110.027
1120.256
1130.533
1140.0112
1150.125
1160.757
1170.0353
1180.1
1190.29
120.323
1200.66
1210.871
1220.801
1230.0291
1240.827
1250.11
1260.289
1270.258
1280.0372
1290.796
130.101
1300.202
1310.839
1320.0605
1330.972
1340.478
1350.0698
1360.879
1371.80623e-4
1380.136
1390.0377
140.289
1400.151
1410.332
1420.974
1430.0435
1440.705
1450.498
1460.814
1470.289
1480.00641
1490.654
150.0999
1500.61
1510.293
1520.284
1530.69
1540.649
1550.283
1560.918
1570.755
1580.116
1590.831
160.381
1600.371
1610.398
1620.445
1630.839
1640.0973
1650.111
1660.756
1670.181
1680.345
1690.00866
170.28
180.164
190.2
20.993
200.604
210.512
220.219
230.125
240.192
250.173
260.0292
270.485
280.548
290.0701
30.0637
300.52
310.667
320.79
330.194
340.486
350.136
360.0476
370.0641
380.427
390.734
40.885
400.103
410.0283
420.327
430.0786
440.774
450.859
460.151
470.388
480.365
490.118
50.106
500.986
510.317
520.343
530.22
540.374
550.505
560.741
570.656
580.081
590.136
60.59
600.0418
610.248
620.0293
630.473
640.317
650.216
660.127
670.472
680.774
690.719
70.136
700.0169
710.0214
720.289
730.139
740.0497
750.0702
760.222
770.464
780.149
790.0392
80.359
800.26
810.255
820.0733
830.536
840.581
850.0276
860.105
870.234
880.591
890.349
90.289
900.0405
910.35
920.336
930.486
940.0308
950.119
960.401
970.968
980.156
990.0481



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13216


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0011111 (human CD14-positive CD16-negative Monocytes sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

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