FF:11861-125A7: Difference between revisions

Latest revision as of 18:24, 4 June 2020

Name:	CD14+ monocytes - treated with IFN + N-hexane, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs13466
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	female
age	69
cell type	monocyte
cell line	NA
company	NA
collaboration	Christine Wells (University of Queensland)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	D3-2
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005739

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13466		CAGE		DRX008150		DRR009022

Accession ID Hg19

Library id		BAM		CTSS
CNhs13466		DRZ000447		DRZ001832

Accession ID Hg38

Library id		BAM		CTSS
CNhs13466		DRZ011797		DRZ013182

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0.124
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0994
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.561
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.5
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.186
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.26
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.774
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0806
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.22
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0.124
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.377
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.371
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.665
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.124
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.22
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.404
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.124
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.299
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0.22
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.859
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0.22
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.874
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.398
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.561
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.86
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.3
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.124
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.365
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.299
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0.124
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.196
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.774
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.584
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.124
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.881
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.423
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.0285
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.664
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.423
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0.695
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0.561
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.22
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.124
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.22
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13466

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	6.29055e-8
MA0003.1	MA0003.1	0.306
MA0004.1	MA0004.1	0.646
MA0006.1	MA0006.1	0.862
MA0007.1	MA0007.1	0.597
MA0009.1	MA0009.1	0.621
MA0014.1	MA0014.1	0.917
MA0017.1	MA0017.1	0.0109
MA0018.2	MA0018.2	0.904
MA0019.1	MA0019.1	0.776
MA0024.1	MA0024.1	0.00149
MA0025.1	MA0025.1	0.12
MA0027.1	MA0027.1	0.731
MA0028.1	MA0028.1	0.128
MA0029.1	MA0029.1	0.363
MA0030.1	MA0030.1	0.235
MA0031.1	MA0031.1	0.567
MA0035.2	MA0035.2	0.271
MA0038.1	MA0038.1	0.0142
MA0039.2	MA0039.2	0.934
MA0040.1	MA0040.1	0.144
MA0041.1	MA0041.1	0.87
MA0042.1	MA0042.1	0.884
MA0043.1	MA0043.1	0.015
MA0046.1	MA0046.1	0.207
MA0047.2	MA0047.2	0.631
MA0048.1	MA0048.1	0.997
MA0050.1	MA0050.1	2.72741e-26
MA0051.1	MA0051.1	4.65789e-17
MA0052.1	MA0052.1	0.767
MA0055.1	MA0055.1	0.415
MA0057.1	MA0057.1	0.844
MA0058.1	MA0058.1	0.457
MA0059.1	MA0059.1	0.631
MA0060.1	MA0060.1	1.86972e-12
MA0061.1	MA0061.1	9.6733e-5
MA0062.2	MA0062.2	0.543
MA0065.2	MA0065.2	0.0083
MA0066.1	MA0066.1	0.0735
MA0067.1	MA0067.1	0.00124
MA0068.1	MA0068.1	0.944
MA0069.1	MA0069.1	0.538
MA0070.1	MA0070.1	9.43768e-4
MA0071.1	MA0071.1	0.375
MA0072.1	MA0072.1	0.83
MA0073.1	MA0073.1	0.34
MA0074.1	MA0074.1	0.174
MA0076.1	MA0076.1	0.145
MA0077.1	MA0077.1	0.199
MA0078.1	MA0078.1	0.469
MA0079.2	MA0079.2	0.625
MA0080.2	MA0080.2	4.51743e-15
MA0081.1	MA0081.1	3.13034e-4
MA0083.1	MA0083.1	0.696
MA0084.1	MA0084.1	0.963
MA0087.1	MA0087.1	0.694
MA0088.1	MA0088.1	0.625
MA0090.1	MA0090.1	0.163
MA0091.1	MA0091.1	0.184
MA0092.1	MA0092.1	0.202
MA0093.1	MA0093.1	0.719
MA0099.2	MA0099.2	8.33567e-29
MA0100.1	MA0100.1	0.779
MA0101.1	MA0101.1	0.00214
MA0102.2	MA0102.2	3.99937e-7
MA0103.1	MA0103.1	0.605
MA0104.2	MA0104.2	0.731
MA0105.1	MA0105.1	4.28901e-7
MA0106.1	MA0106.1	0.962
MA0107.1	MA0107.1	4.22157e-4
MA0108.2	MA0108.2	0.00241
MA0111.1	MA0111.1	0.445
MA0112.2	MA0112.2	7.41105e-5
MA0113.1	MA0113.1	0.384
MA0114.1	MA0114.1	0.148
MA0115.1	MA0115.1	0.539
MA0116.1	MA0116.1	3.3652e-4
MA0117.1	MA0117.1	0.308
MA0119.1	MA0119.1	0.339
MA0122.1	MA0122.1	0.805
MA0124.1	MA0124.1	0.983
MA0125.1	MA0125.1	0.511
MA0131.1	MA0131.1	0.368
MA0135.1	MA0135.1	0.594
MA0136.1	MA0136.1	1.10099e-14
MA0137.2	MA0137.2	4.67606e-17
MA0138.2	MA0138.2	0.833
MA0139.1	MA0139.1	0.891
MA0140.1	MA0140.1	0.236
MA0141.1	MA0141.1	0.0712
MA0142.1	MA0142.1	0.533
MA0143.1	MA0143.1	0.581
MA0144.1	MA0144.1	4.92254e-7
MA0145.1	MA0145.1	0.181
MA0146.1	MA0146.1	0.0957
MA0147.1	MA0147.1	0.72
MA0148.1	MA0148.1	0.937
MA0149.1	MA0149.1	0.283
MA0150.1	MA0150.1	2.76296e-13
MA0152.1	MA0152.1	0.697
MA0153.1	MA0153.1	0.00701
MA0154.1	MA0154.1	0.00266
MA0155.1	MA0155.1	0.799
MA0156.1	MA0156.1	8.59996e-9
MA0157.1	MA0157.1	0.627
MA0159.1	MA0159.1	0.0132
MA0160.1	MA0160.1	0.0408
MA0162.1	MA0162.1	0.632
MA0163.1	MA0163.1	6.72317e-7
MA0164.1	MA0164.1	0.718
MA0258.1	MA0258.1	0.00174
MA0259.1	MA0259.1	0.508

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13466

Novel motif	Logo	P-value
1	1	0.108
10	10	0.0282
100	100	0.817
101	101	0.795
102	102	0.532
103	103	0.145
104	104	0.625
105	105	0.521
106	106	6.10285e-4
107	107	0.177
108	108	0.793
109	109	0.152
11	11	0.1
110	110	0.189
111	111	0.0316
112	112	0.263
113	113	0.652
114	114	0.00777
115	115	0.365
116	116	0.721
117	117	0.0568
118	118	0.215
119	119	0.153
12	12	0.471
120	120	0.332
121	121	0.696
122	122	0.582
123	123	0.184
124	124	0.923
125	125	0.37
126	126	0.394
127	127	0.273
128	128	0.0103
129	129	0.384
13	13	0.18
130	130	0.199
131	131	0.568
132	132	0.0825
133	133	0.936
134	134	0.606
135	135	0.346
136	136	0.87
137	137	0.0196
138	138	0.167
139	139	0.0561
14	14	0.381
140	140	0.253
141	141	0.304
142	142	0.274
143	143	0.0175
144	144	0.781
145	145	0.278
146	146	0.866
147	147	0.361
148	148	0.013
149	149	0.618
15	15	0.116
150	150	0.42
151	151	0.307
152	152	0.0816
153	153	0.565
154	154	0.487
155	155	0.481
156	156	0.647
157	157	0.945
158	158	0.172
159	159	0.421
16	16	0.236
160	160	0.368
161	161	0.485
162	162	0.428
163	163	0.148
164	164	0.168
165	165	0.0456
166	166	0.767
167	167	0.24
168	168	0.269
169	169	0.00888
17	17	0.166
18	18	0.145
19	19	0.256
2	2	0.97
20	20	0.433
21	21	0.35
22	22	0.23
23	23	0.0302
24	24	0.208
25	25	0.347
26	26	0.0384
27	27	0.706
28	28	0.511
29	29	0.242
3	3	0.0532
30	30	0.675
31	31	0.754
32	32	0.737
33	33	0.344
34	34	0.464
35	35	0.195
36	36	0.168
37	37	0.0818
38	38	0.448
39	39	0.738
4	4	0.965
40	40	0.308
41	41	0.0342
42	42	0.316
43	43	0.0404
44	44	0.563
45	45	0.724
46	46	0.12
47	47	0.365
48	48	0.357
49	49	0.125
5	5	0.221
50	50	0.878
51	51	0.296
52	52	0.198
53	53	0.45
54	54	0.253
55	55	0.229
56	56	0.645
57	57	0.781
58	58	0.0909
59	59	0.132
6	6	0.64
60	60	0.0203
61	61	0.71
62	62	0.0287
63	63	0.351
64	64	0.411
65	65	0.257
66	66	0.339
67	67	0.555
68	68	0.879
69	69	0.525
7	7	0.267
70	70	0.0142
71	71	0.0363
72	72	0.106
73	73	0.125
74	74	0.0486
75	75	0.0876
76	76	0.372
77	77	0.322
78	78	0.0698
79	79	0.0349
8	8	0.31
80	80	0.156
81	81	0.302
82	82	0.0512
83	83	0.218
84	84	0.353
85	85	0.0153
86	86	0.0741
87	87	0.347
88	88	0.516
89	89	0.207
9	9	0.248
90	90	0.0543
91	91	0.367
92	92	0.125
93	93	0.609
94	94	0.0437
95	95	0.329
96	96	0.387
97	97	0.856
98	98	0.0924
99	99	0.213

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13466

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011443 CD14-positive monocytes - treated with IFN + N-hexane sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000350 (experimentally modified sample)
0000629 (IFN and N-hexane treatment sample)
0011443 (CD14-positive monocytes - treated with IFN + N-hexane sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004765,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405,UBERON:0003081,UBERON:0006603,UBERON:0003061
+|DRA_sample_Accession=CAGE@SAMD00005739
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000839,CL:0000548,CL:0002194,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000766,CL:0000219,CL:0000004,CL:0000134,CL:0000738,CL:0002087,CL:0000255,CL:0002031,CL:0000576,CL:0000037,CL:0000860,CL:0000566,CL:0000049,CL:0000557,CL:0000837,CL:0002057,CL:0002009,CL:0000040,CL:0000559
+|accession_numbers=CAGE;DRX008150;DRR009022;DRZ000447;DRZ001832;DRZ011797;DRZ013182
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000350,FF:0000629,FF:0011443
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.43!2690.27!PLEK;;chr16:85932760..85932775,+!p1@IRF8!2.97!937.77!IRF8;;chr11:47400078..47400106,-!p1@SPI1!2.71!506.65!SPI1;;chr12:54778471..54778528,-!p1@ZNF385A!2.70!497.42!ZNF385A;;chr7:115670804..115670825,-!p1@TFEC!2.34!218.03!TFEC;;chr6:36355431..36355466,-!p1@ETV7!2.18!150.41!ETV7;;chr6:106534192..106534224,+!p1@PRDM1!2.13!363.83!PRDM1;;chr11:47399947..47399961,-!p3@SPI1!2.10!123.69!SPI1;;chr1:25256756..25256774,-!p1@RUNX3!2.08!218.03!RUNX3;;chr20:39317868..39317884,-!p1@MAFB!2.06!1268.94!MAFB;;chr2:70142232..70142251,+!p1@MXD1!2.05!598.02!MXD1;;chr11:64764435..64764449,-!p1@BATF2!2.05!151.07!BATF2;;chr7:128577972..128578047,+!p1@IRF5!2.04!166.25!IRF5;;chr10:35484053..35484076,+!p1@CREM!2.02!249.70!CREM;;chr5:131826457..131826514,-!p1@IRF1!1.97!3403.08!IRF1;;chr11:47400062..47400077,-!p2@SPI1!1.94!86.09!SPI1;;chr11:615942..615957,-!p1@IRF7!1.92!723.03!IRF7;;chr2:231084639..231084654,-!p2@SP110!1.87!118.75!SP110;;chr6:106534230..106534254,+!p2@PRDM1!1.86!173.83!PRDM1;;chr19:50432132..50432217,+!p2@ATF5!1.84!81.47!ATF5;;chr11:47399996..47400014,-!p4@SPI1!1.83!66.96!SPI1;;chr1:158985493..158985535,+!p4@IFI16!1.74!81.14!IFI16;;chr10:64576105..64576133,-!p1@EGR2!1.73!105.88!EGR2;;chr14:75988771..75988826,+!p1@BATF!1.73!69.60!BATF;;chr11:47400032..47400043,-!p5@SPI1!1.73!52.45!SPI1;;chr21:36260295..36260310,-!p3@RUNX1!1.72!82.13!RUNX1;;chr14:75988831..75988847,+!p2@BATF!1.68!46.84!BATF;;chr12:54778351..54778378,-!p6@ZNF385A!1.66!44.86!ZNF385A;;chr4:185395590..185395627,-!p3@IRF2!1.61!48.82!IRF2;;chr2:145277640..145277771,-!p1@ZEB2!1.58!467.73!ZEB2;;chr2:68592394..68592405,+!p2@PLEK!1.58!37.27!PLEK;;chr1:221052776..221052799,+!p1@HLX!1.57!63.66!HLX;;chr21:30671690..30671762,+!p2@BACH1!1.56!117.43!BACH1;;chr11:615570..615721,-!p2@IRF7!1.56!68.94!IRF7;;chr12:56415246..56415286,+!p2@IKZF4!1.56!35.62!IKZF4;;chr7:50344289..50344323,+!p1@IKZF1!1.56!34.96!IKZF1;;chr19:33793430..33793447,-!p1@CEBPA!1.55!138.87!CEBPA;;chr2:97202480..97202499,+!p1@ARID5A!1.53!317.32!ARID5A;;chr1:158979872..158979898,+!p3@IFI16!1.52!96.32!IFI16;;chr10:51572339..51572376,+!p4@NCOA4!1.52!70.92!NCOA4;;chr17:45810594..45810608,+!p1@TBX21!1.52!32.33!TBX21;;chr21:34442439..34442455,+!p1@OLIG1!1.52!32.00!OLIG1;;chr16:31885093..31885165,+!p1@ZNF267!1.51!454.21!ZNF267;;chr10:51572408..51572454,+!p3@NCOA4!1.50!173.50!NCOA4;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.50!30.68!ZBED1;;chr6:391743..391759,+!p1@IRF4!1.49!29.69!IRF4;;chr12:54694758..54694805,-!p1@NFE2!1.47!34.30!NFE2;;chrX:129244454..129244488,-!p1@ELF4!1.46!194.94!ELF4;;chr12:11802753..11802834,+!p2@ETV6!1.45!127.65!ETV6;;chr11:65430554..65430579,-!p3@RELA!1.45!67.62!RELA;;chr6:144385698..144385742,-!p2@PLAGL1!1.45!32.99!PLAGL1;;chr3:187455486..187455504,-!p6@BCL6!1.45!27.05!BCL6;;chr12:48298765..48298783,-!p2@VDR!1.43!52.78!VDR;;chr4:185395633..185395651,-!p2@IRF2!1.43!41.23!IRF2;;chr2:231090471..231090504,+!p2@SP140!1.43!26.06!SP140;;chr1:25256439..25256476,-!p3@RUNX3!1.43!26.06!RUNX3;;chr21:30672433..30672464,+!p6@BACH1!1.43!25.73!BACH1;;chr11:2292226..2292270,-!p1@ASCL2!1.41!24.74!ASCL2;;chr2:145275162..145275202,-!p2@ZEB2!1.40!138.54!ZEB2;;chr16:79634624..79634642,-!p1@MAF!1.40!91.70!MAF;;chr11:47400045..47400060,-!p6@SPI1!1.39!23.42!SPI1;;chr2:70314240..70314256,+!p4@PCBP1!1.36!44.20!PCBP1;;chr1:212782094..212782109,+!p1@ATF3!1.35!563.72!ATF3;;chr21:30671235..30671253,+!p1@BACH1!1.35!264.54!BACH1;;chr12:72056800..72056834,+!p1@THAP2!1.35!28.70!THAP2;;chr13:41593425..41593480,-!p1@ELF1!1.34!129.30!ELF1;;chr11:65430535..65430549,-!p4@RELA!1.34!24.41!RELA;;chr11:47399920..47399931,-!p7@SPI1!1.34!21.11!SPI1;;chr2:231090433..231090469,+!p1@SP140!1.34!21.11!SP140;;chr3:187455529..187455544,-!p5@BCL6!1.34!20.78!BCL6;;chr3:187455680..187455700,-!p4@BCL6!1.34!20.78!BCL6;;chr6:106535598..106535637,+!p7@PRDM1!1.34!20.78!PRDM1;;chrX:129244430..129244442,-!p5@ELF4!1.34!20.78!ELF4;;chr12:72056749..72056767,+!p6@THAP2!1.33!22.76!THAP2;;chr12:72056773..72056796,+!p3@THAP2!1.32!25.73!THAP2;;chr1:8484007..8484061,-!p13@RERE!1.32!25.07!RERE;;chr10:31288398..31288455,-!p2@ZNF438!1.32!23.09!ZNF438;;chr19:45251395..45251432,+!p8@BCL3!1.32!19.79!BCL3;;chr6:126240463..126240489,+!p6@NCOA7!1.31!21.77!NCOA7;;chr6:36355486..36355497,-!p3@ETV7!1.31!19.46!ETV7;;chr7:28725740..28725778,+!p1@CREB5!1.30!163.61!CREB5;;chr9:110250697..110250738,-!p2@KLF4!1.29!21.44!KLF4;;chr10:31288370..31288393,-!p3@ZNF438!1.29!18.47!ZNF438;;chr2:231084659..231084721,-!p1@SP110!1.28!409.02!SP110;;chr18:3449720..3449749,+!p2@TGIF1!1.28!37.93!TGIF1;;chr16:79634595..79634620,-!p2@MAF!1.28!32.33!MAF;;chr12:48298785..48298828,-!p1@VDR!1.27!92.03!VDR;;chr21:36421535..36421610,-!p2@RUNX1!1.26!60.69!RUNX1;;chr19:45250948..45250998,+!p3@BCL3!1.26!43.21!BCL3;;chr16:89787973..89788001,+!p3@ZNF276!1.26!32.33!ZNF276;;chr7:150946376..150946389,-!p6@SMARCD3!1.26!17.15!SMARCD3;;chr19:45252008..45252024,+!p2@BCL3!1.23!52.45!BCL3;;chr19:13213662..13213686,-!p1@LYL1!1.23!23.42!LYL1;;chr9:110252035..110252057,-!p1@KLF4!1.22!244.42!KLF4;;chr16:3285119..3285133,-!p2@ZNF200!1.22!31.01!ZNF200;;chr10:35484090..35484104,+!p6@CREM!1.20!14.84!CREM;;chr17:38497662..38497713,+!p4@RARA!1.19!16.82!RARA;;chr1:221053049..221053075,+!p3@HLX!1.18!24.74!HLX;;chr19:45251943..45252006,+!p1@BCL3!1.16!350.63!BCL3;;chr8:116681123..116681143,-!p4@TRPS1!1.16!25.73!TRPS1;;chr14:74226961..74227020,-!p1@C14orf43!1.15!85.10!C14orf43;;chr14:74226747..74226779,-!p3@C14orf43!1.15!72.57!C14orf43;;chr6:15246200..15246214,+!p2@JARID2!1.15!36.61!JARID2;;chr19:45254529..45254561,+!p10@BCL3!1.15!17.81!BCL3;;chr20:48807351..48807384,+!p1@CEBPB!1.14!1285.10!CEBPB;;chr4:106068026..106068084,+!p1@TET2!1.14!115.12!TET2;;chr3:63898321..63898396,+!p3@ATXN7!1.14!29.69!ATXN7;;chr1:158985686..158985719,+!p15@IFI16!1.14!12.86!IFI16;;chrX:106960285..106960299,-!p1@TSC22D3!1.13!334.47!TSC22D3;;chr2:191885737..191885750,-!p4@STAT1!1.13!12.53!STAT1;;chr3:187455634..187455651,-!p7@BCL6!1.13!12.53!BCL6;;chr12:56415287..56415300,+!p5@IKZF4!1.13!12.53!IKZF4;;chr6:44233252..44233296,-!p1@NFKBIE!1.12!118.75!NFKBIE;;chr21:36260343..36260402,-!p6@RUNX1!1.12!19.46!RUNX1;;chr2:70167296..70167306,+!p3@MXD1!1.12!18.80!MXD1;;chr19:45971246..45971265,+!p1@FOSB!1.11!222.32!FOSB;;chr7:149470641..149470694,-!p1@ZNF467!1.11!54.10!ZNF467;;chr9:117150254..117150271,-!p1@AKNA!1.11!32.99!AKNA;;chr2:145277882..145277967,-!p3@ZEB2!1.11!20.45!ZEB2;;chr4:185395191..185395226,-!p4@IRF2!1.11!16.49!IRF2;;chr19:45254481..45254495,+!p13@BCL3!1.11!11.87!BCL3;;chr1:221052733..221052749,+!p2@HLX!1.10!15.17!HLX;;chr2:231084820..231084836,-!p5@SP110!1.10!13.19!SP110;;chr7:115670792..115670797,-!p2@TFEC!1.10!11.54!TFEC;;chr3:187463179..187463201,-!p2@BCL6!1.09!46.84!BCL6;;chr2:231280954..231280965,+!p2@SP100!1.09!20.78!SP100;;chr4:103422499..103422632,+!p1@NFKB1!1.07!225.29!NFKB1;;chr2:238600933..238600985,+!p3@LRRFIP1!1.07!58.38!LRRFIP1;;chr12:96588279..96588299,+!p4@ELK3!1.07!51.46!ELK3;;chr8:71316428..71316459,-!p2@NCOA2!1.07!18.14!NCOA2;;chr12:54785074..54785122,-!p2@ZNF385A!1.07!16.82!ZNF385A;;chr10:104155480..104155534,+!p2@NFKB2!1.06!67.95!NFKB2;;chr17:38498402..38498445,+!p3@RARA!1.06!38.26!RARA;;chr14:35872453..35872485,-!p2@NFKBIA!1.06!26.39!NFKBIA;;chr8:116681150..116681164,-!p5@TRPS1!1.06!20.78!TRPS1;;chr6:15246261..15246312,+!p1@JARID2!1.05!253.00!JARID2;;chr1:158979792..158979814,+!p2@IFI16!1.05!99.62!IFI16;;chr22:38597987..38598021,+!p2@MAFF!1.05!63.66!MAFF;;chr3:107318352..107318392,+!p14@BBX!1.05!10.23!BBX;;chr20:56195474..56195506,-!p1@ZBP1!1.05!10.23!ZBP1;;chr21:36260325..36260341,-!p14@RUNX1!1.05!10.23!RUNX1;;chr3:39195037..39195069,-!p2@CSRNP1!1.04!63.33!CSRNP1;;chr6:126240380..126240430,+!p2@NCOA7!1.04!26.06!NCOA7;;chr12:56753869..56753930,-!p1@STAT2!1.03!428.81!STAT2;;chr10:35484804..35484902,+!p2@CREM!1.03!37.60!CREM;;chr7:17338266..17338282,+!p1@AHR!1.02!102.91!AHR;;chr9:88969303..88969335,-!p1@ZCCHC6!1.02!90.71!ZCCHC6;;chr9:3525727..3525828,-!p2@RFX3!1.02!24.41!RFX3;;chr2:28618532..28618610,+!p4@FOSL2!1.02!16.49!FOSL2;;chr2:231077626..231077651,-!p6@SP110!1.01!11.87!SP110;;chr19:45254508..45254528,+!p12@BCL3!1.01!10.23!BCL3;;chr3:107318229..107318239,+!p17@BBX!1.01!9.24!BBX;;chr7:50343634..50343717,+!p2@IKZF1!1.01!9.24!IKZF1;;chr2:145275228..145275241,-!p11@ZEB2!1.00!10.89!ZEB2;;chr13:41593392..41593403,-!p7@ELF1!1.00!8.91!ELF1;;chr19:42636586..42636607,-!p1@POU2F2!0.99!24.74!POU2F2;;chr18:3449695..3449712,+!p9@TGIF1!0.99!13.52!TGIF1;;chr2:70142189..70142223,+!p2@MXD1!0.98!63.00!MXD1;;chr6:106535687..106535706,+!p8@PRDM1!0.98!8.58!PRDM1;;chr7:137620684..137620711,-!p4@CREB3L2!0.98!8.58!CREB3L2;;chr4:140098339..140098392,-!p1@ELF2!0.97!71.25!ELF2;;chr3:37217736..37217753,-!p2@LRRFIP2!0.97!36.28!LRRFIP2;;chr1:158985469..158985489,+!p7@IFI16!0.97!9.90!IFI16;;chr1:25256175..25256228,-!p5@RUNX3!0.97!8.25!RUNX3;;chr20:47894569..47894799,-!p1@ZNFX1!0.96!219.35!ZNFX1;;chrX:106960180..106960197,-!p2@TSC22D3!0.96!32.00!TSC22D3;;chr21:36259445..36259519,-!p4@RUNX1!0.96!23.42!RUNX1;;chr7:99156393..99156433,+!p6@ZNF655!0.96!18.80!ZNF655;;chr1:158979851..158979865,+!p5@IFI16!0.96!18.47!IFI16;;chr17:38474489..38474548,+!p1@RARA!0.95!255.96!RARA;;chr21:36260980..36261011,-!p1@RUNX1!0.95!235.84!RUNX1;;chr7:139762641..139762768,-!p1@PARP12!0.95!110.17!PARP12;;chr8:116681194..116681214,-!p1@TRPS1!0.95!75.87!TRPS1;;chr17:38498594..38498661,+!p2@RARA!0.95!27.05!RARA;;chr1:158979922..158979933,+!p13@IFI16!0.95!7.92!IFI16;;chr1:158985457..158985468,+!p12@IFI16!0.95!7.92!IFI16;;chr21:30672734..30672748,+!p11@BACH1!0.95!7.92!BACH1;;chr5:172483347..172483407,+!p1@C5orf41!0.94!60.36!CREBRF;;chr10:104154246..104154347,+!p3@NFKB2!0.94!48.49!NFKB2;;chr14:62162285..62162296,+!p3@HIF1A!0.94!41.56!HIF1A;;chr18:3449586..3449617,+!p8@TGIF1!0.94!12.53!TGIF1;;chr16:3285144..3285191,-!p1@ZNF200!0.93!38.26!ZNF200;;chr20:48807615..48807644,+!p6@CEBPB!0.93!12.86!CEBPB;;chr3:39195139..39195150,-!p3@CSRNP1!0.93!9.57!CSRNP1;;chr1:221052840..221052875,+!p4@HLX!0.93!8.91!HLX;;chr2:145277589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XL1;;chr2:60780753..60780800,-!p1@BCL11A!0.65!19.79!BCL11A;;chr4:26322267..26322334,+!p3@RBPJ!0.65!9.24!RBPJ;;chr4:87857474..87857489,+!p7@AFF1!0.65!6.60!AFF1;;chr3:170075103..170075114,+!p5@SKIL!0.65!4.95!SKIL;;chr4:106156933..106156947,+!p3@TET2!0.65!4.95!TET2;;chr1:38325227..38325246,-!p2@MTF1!0.65!4.95!MTF1;;chr11:65430586..65430593,-!p5@RELA!0.65!3.96!RELA;;chr20:48599506..48599526,+!p1@SNAI1!0.64!25.40!SNAI1;;chr7:99156434..99156510,+!p2@ZNF655!0.64!23.75!ZNF655;;chr21:30671211..30671234,+!p3@BACH1!0.64!18.80!BACH1;;chr1:67396044..67396071,+!p3@MIER1!0.64!13.52!MIER1;;chr20:48807171..48807234,+!p4@CEBPB!0.64!8.25!CEBPB;;chr12:11802932..11802949,+!p3@ETV6!0.64!6.27!ETV6;;chr4:87968203..87968221,+!p11@AFF1!0.64!5.94!AFF1;;chr14:103059006..103059017,+!p2@RCOR1!0.64!5.61!RCOR1;;chr2:192015701..192015743,-!p1@STAT4!0.64!4.95!STAT4;;chr2:145275211..145275220,-!p14@ZEB2!0.64!4.29!ZEB2;;chr17:38504601..38504634,+!p9@RARA!0.64!3.96!RARA;;chr6:35310363..35310382,+!p3@PPARD!0.63!13.85!PPARD;;chr16:79633894..79633954,-!p3@MAF!0.63!6.93!MAF;;chrX:24167800..24167811,+!p3@ZFX!0.63!4.29!ZFX;;chrX:153305787..153305807,-!p3@MECP2!0.63!3.30!MECP2;;chr2:70167033..70167069,+!p11@MXD1!0.63!3.30!MXD1;;chr1:221054922..221054933,+!p16@HLX!0.63!3.30!HLX;;chr12:54691711..54691725,-!p7@NFE2!0.63!3.30!NFE2;;chr12:72056706..72056717,+!p10@THAP2!0.63!3.30!THAP2;;chr5:142782862..142782881,-!p11@NR3C1!0.63!3.30!NR3C1;;chr22:38598086..38598105,+!p1@MAFF!0.62!40.24!MAFF;;chr6:12012170..12012245,+!p1@HIVEP1!0.62!18.80!HIVEP1;;chr8:116681221..116681236,-!p3@TRPS1!0.62!10.89!TRPS1;;chr1:249132556..249132573,+!p3@ZNF672!0.62!10.56!ZNF672;;chr15:64752804..64752842,+!p2@ZNF609!0.62!8.58!ZNF609;;chr14:62203595..62203676,+!p4@HIF1A!0.62!6.60!HIF1A;;chr20:48807648..48807671,+!p9@CEBPB!0.62!4.95!CEBPB;;chr15:85291372..85291405,+!p3@ZNF592!0.62!4.62!ZNF592;;chr21:36231861..36231877,-!p12@RUNX1!0.62!4.29!RUNX1;;chr1:37940170..37940190,+!p1@ZC3H12A!0.61!45.85!ZC3H12A;;chr11:13299319..13299424,+!p1@ARNTL!0.61!36.94!ARNTL;;chr3:129158715..129158766,-!p2@MBD4!0.61!35.62!MBD4;;chr7:17338239..17338262,+!p2@AHR!0.61!27.38!AHR;;chrX:106960249..106960260,-!p5@TSC22D3!0.61!5.28!TSC22D3;;chr7:106809470..106809481,+!p2@HBP1!0.61!4.62!HBP1;;chr14:35872494..35872511,-!p5@NFKBIA!0.61!4.29!NFKBIA;;chr18:3449330..3449344,+!p10@TGIF1!0.61!4.29!TGIF1;;chr19:13213704..13213726,-!p3@LYL1!0.61!4.29!LYL1;;chr3:193853927..193853944,+!p1@HES1!0.60!118.42!HES1;;chr14:103058948..103059005,+!p1@RCOR1!0.60!99.62!RCOR1;;chr7:1570322..1570360,+!p1@MAFK!0.60!30.02!MAFK;;chr6:43138999..43139017,+!p2@SRF!0.60!21.11!SRF;;chrX:101186981..101187030,-!p1@ZMAT1!0.60!11.21!ZMAT1;;chr12:27485762..27485776,+!p3@ARNTL2!0.60!9.24!ARNTL2;;chr4:87928307..87928321,+!p8@AFF1!0.60!7.59!AFF1;;chr2:74730430..74730451,-!p1@LBX2!0.60!5.28!LBX2;;chr10:104155659..104155676,+!p4@NFKB2!0.60!3.96!NFKB2;;chr3:18466660..18466676,-!p5@SATB1!0.60!3.63!SATB1;;chr2:185463158..185463181,+!p2@ZNF804A!0.60!2.97!ZNF804A;;chr2:68619491..68619507,+!p7@PLEK!0.60!2.97!PLEK;;chr2:70166499..70166536,+!p6@MXD1!0.60!2.97!MXD1;;chr17:79881318..79881331,-!p7@MAFG!0.60!2.97!MAFG;;chr19:36389839..36389857,-!p4@NFKBID!0.60!2.97!NFKBID;;chr7:128578070..128578077,+!p3@IRF5!0.60!2.97!IRF5;;chr10:51575814..51575835,+!p8@NCOA4!0.60!2.97!NCOA4;;chr1:161014760..161014788,-!p4@USF1!0.60!2.97!USF1;;chr4:57774042..57774114,+!p1@REST!0.59!86.42!REST;;chr5:142784003..142784065,-!p2@NR3C1!0.59!29.03!NR3C1;;chr19:45261550..45261641,+!p6@BCL3!0.59!5.28!BCL3;;chr20:48807143..48807165,+!p11@CEBPB!0.59!4.62!CEBPB;;chr10:98592751..98592765,+!p5@LCOR!0.59!3.96!LCOR;;chr8:71316403..71316427,-!p6@NCOA2!0.59!3.63!NCOA2;;chr19:4065485..4065546,-!p2@ZBTB7A!0.58!30.68!ZBTB7A;;chr13:41635285..41635356,-!p3@ELF1!0.58!13.52!ELF1;;chr21:40177892..40177903,+!p2@ETS2!0.58!13.52!ETS2;;chr2:178129358..178129403,-!p5@NFE2L2!0.58!13.52!NFE2L2;;chr19:12721616..12721640,-!p2@ZNF490!0.58!11.54!ZNF490;;chr19:12721790..12721810,+!p2@ZNF791!0.58!8.91!ZNF791;;chr9:102584128..102584144,+!p3@NR4A3!0.58!5.94!NR4A3;;chr20:48807548..48807572,+!p14@CEBPB!0.58!3.63!CEBPB;;chr14:75745523..75745537,+!p1@FOS!0.57!410.99!FOS;;chr2:208031542..208031595,-!p2@KLF7!0.57!23.42!KLF7;;chrX:83757450..83757485,-!p1@HDX!0.57!14.18!HDX;;chr2:60780607..60780624,-!p2@BCL11A!0.57!9.90!BCL11A;;chr18:3448422..3448439,+!p11@TGIF1!0.57!4.29!TGIF1;;chr15:100106155..100106243,+!p1@MEF2A!0.56!86.75!MEF2A;;chr11:65667846..65667868,-!p1@FOSL1!0.56!86.75!FOSL1;;chr7:106809432..106809455,+!p1@HBP1!0.56!63.33!HBP1;;chr5:132299210..132299228,-!p3@AFF4!0.56!37.93!AFF4;;chr19:45504688..45504782,+!p1@RELB!0.56!19.79!RELB;;chr2:157198916..157198978,-!p2@NR4A2!0.56!11.21!NR4A2;;chr14:65569101..65569119,-!p3@MAX!0.56!9.90!MAX;;chr5:321810..321877,+!p1@AHRR!0.56!9.90!AHRR;;chrX:106960221..106960236,-!p3@TSC22D3!0.56!8.58!TSC22D3;;chr10:35415761..35415800,+!p7@CREM!0.56!7.92!CREM;;chr1:114302066..114302080,-!p2@PHTF1!0.56!5.28!PHTF1;;chr17:79885633..79885645,-!p4@MAFG!0.56!4.95!MAFG;;chr12:11905413..11905432,+!p14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+|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=EFO:0000369,FF:0000629,FF:0011443,FF:11861-125A7
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520IFN%2520%252b%2520N-hexane%252c%2520donor1.CNhs13466.11861-125A7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520IFN%2520%252b%2520N-hexane%252c%2520donor1.CNhs13466.11861-125A7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520IFN%2520%252b%2520N-hexane%252c%2520donor1.CNhs13466.11861-125A7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520IFN%2520%252b%2520N-hexane%252c%2520donor1.CNhs13466.11861-125A7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520IFN%2520%252b%2520N-hexane%252c%2520donor1.CNhs13466.11861-125A7.hg38.nobarcode.ctss.bed.gz
 |id=FF:11861-125A7
-|is_a=EFO:0002091;;FF:0000002;;FF:0000210;;FF:0011443
+|is_a=EFO:0002091;;FF:0011443
+|is_obsolete=
+|library_id=CNhs13466
+|library_id_phase_based=2:CNhs13466
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11861
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11861
 |name=CD14+ monocytes - treated with IFN + N-hexane, donor1
 |namespace=
@@ Line 42: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13466,LSID1024,release012,COMPLETED
-|profile_rnaseq=,,,
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 |profile_srnaseq=,,,
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 |rna_box=125
 |rna_catalog_number=
@@ Line 57: / Line 79: @@
 |rna_weight_ug=3.82545
 |sample_age=69
+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 77: / Line 100: @@
 |sample_tissue=
 |top_motifs=STAT2,4,6:4.70537868478;STAT1,3:4.19777384016;IRF7:4.09485794335;IRF1,2:3.78873340626;STAT5{A,B}:3.17986788248;NFE2L2:2.81632113569;CEBPA,B_DDIT3:2.61671126687;SPI1:2.51429316509;EP300:2.45712261662;SPIB:2.4344380225;NANOG{mouse}:2.4275918856;SREBF1,2:2.22689717353;NFE2:2.08185698893;PAX2:1.99896406771;TLX2:1.99083012476;FOXN1:1.93154158343;DMAP1_NCOR{1,2}_SMARC:1.90478852849;ETS1,2:1.90381330735;FOSL2:1.82721868797;NR1H4:1.73415267894;NFIL3:1.70295662128;PDX1:1.61016689175;BACH2:1.60218812631;NR6A1:1.52158559062;HLF:1.4874045667;FOS_FOS{B,L1}_JUN{B,D}:1.48134809766;FOXP3:1.41473686674;ELF1,2,4:1.37862088814;NFE2L1:1.36759450907;RXRA_VDR{dimer}:1.26606474117;RUNX1..3:1.20463389224;ATF5_CREB3:1.1934738105;ATF6:1.11993997538;TFCP2:1.0865884932;NFKB1_REL_RELA:1.07091507462;TGIF1:1.00653876645;ESRRA:0.973942640884;SPZ1:0.916869485405;FOXD3:0.851763830691;CDX1,2,4:0.799616746575;HBP1_HMGB_SSRP1_UBTF:0.792167872327;ATF4:0.78533015004;CREB1:0.760939076168;HMX1:0.734820806904;NKX3-2:0.660311070662;ALX4:0.651298177497;MAFB:0.576201876006;FOX{D1,D2}:0.452751769441;BPTF:0.451037930638;GLI1..3:0.444311292931;HIF1A:0.441419874746;ATF2:0.423729595058;HMGA1,2:0.379413274207;PAX3,7:0.366419361835;SMAD1..7,9:0.316430169265;PITX1..3:0.307559809526;FOX{F1,F2,J1}:0.22540526089;HSF1,2:0.224913154877;ESR1:0.198069947352;ZBTB16:0.19143569643;GATA4:0.189040181499;JUN:0.169319342044;MYB:0.153029437554;IKZF2:0.122868720316;PRDM1:0.0682335548746;NKX2-2,8:0.0466795207044;AHR_ARNT_ARNT2:0.0399329991483;FOXO1,3,4:0.0102481316093;TFAP4:-0.00927754575234;EN1,2:-0.0258440272738;XBP1:-0.0357990223858;RFX2..5_RFXANK_RFXAP:-0.079496591919;SRF:-0.0931907627491;MYFfamily:-0.135366708958;RXR{A,B,G}:-0.137808737499;NFIX:-0.163640959628;DBP:-0.200071206457;HOX{A6,A7,B6,B7}:-0.218049004918;NFATC1..3:-0.27205286285;PAX1,9:-0.296792897761;HNF4A_NR2F1,2:-0.298794090223;MZF1:-0.306755860215;NANOG:-0.330577302004;ZNF148:-0.381197626214;HES1:-0.392048672958;FOXM1:-0.438679382977;PAX4:-0.445239520235;TAL1_TCF{3,4,12}:-0.445751603225;PATZ1:-0.453484371917;POU6F1:-0.45999065526;TBP:-0.474444212315;VSX1,2:-0.488153116448;ZNF238:-0.525310840083;REST:-0.540311302631;FOXP1:-0.56028243324;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.568092050937;GATA6:-0.56861029246;POU1F1:-0.577777946343;IKZF1:-0.582627995881;NHLH1,2:-0.584711373258;CUX2:-0.59232384782;TOPORS:-0.594050974539;CRX:-0.601290196973;PAX8:-0.605580766954;MED-1{core}:-0.609005787913;ALX1:-0.61228488441;NKX6-1,2:-0.61932717213;HNF1A:-0.625752733134;MYOD1:-0.633565337413;OCT4_SOX2{dimer}:-0.64312698855;POU2F1..3:-0.657532231334;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.678864346092;PRRX1,2:-0.700957921399;TFAP2{A,C}:-0.705400978065;GCM1,2:-0.720302198655;POU5F1:-0.724418993284;ZBTB6:-0.749250312702;FOXA2:-0.777020794745;FOXL1:-0.801375097656;PPARG:-0.81776638652;EGR1..3:-0.829123415155;EBF1:-0.838728571941;MTF1:-0.839077997137;HAND1,2:-0.851108389561;RREB1:-0.858327275288;HOXA9_MEIS1:-0.873822929955;SOX2:-0.928036477377;MEF2{A,B,C,D}:-0.95228085241;NR3C1:-0.963677548861;EVI1:-0.96539257079;KLF4:-0.998306959656;UFEwm:-1.00209042298;MTE{core}:-1.01774206735;SOX5:-1.01966972185;HOX{A5,B5}:-1.02501963438;TFAP2B:-1.03349264386;ZEB1:-1.03858488105;ZFP161:-1.06484240051;PAX6:-1.08268839482;LMO2:-1.10585933826;MAZ:-1.10604300365;NKX3-1:-1.11755502671;AIRE:-1.11872968741;GTF2I:-1.16521155758;GZF1:-1.16997494583;ZIC1..3:-1.17070925061;SP1:-1.18849453813;TP53:-1.2041366521;FOXQ1:-1.22151900961;TLX1..3_NFIC{dimer}:-1.23368750399;AR:-1.24237562412;SNAI1..3:-1.24327829034;GTF2A1,2:-1.28202079561;XCPE1{core}:-1.29271983034;ADNP_IRX_SIX_ZHX:-1.35097000085;RFX1:-1.35524699211;TEF:-1.38490265055;ZNF423:-1.41836564524;E2F1..5:-1.43464291791;RORA:-1.44774781577;POU3F1..4:-1.45671914342;RBPJ:-1.46807525209;TEAD1:-1.47390811823;YY1:-1.49980731983;ELK1,4_GABP{A,B1}:-1.50882582669;TFDP1:-1.54226786445;MYBL2:-1.5683296863;BREu{core}:-1.60195131181;PAX5:-1.61130630502;SOX{8,9,10}:-1.66094790475;HIC1:-1.68125378389;GFI1B:-1.72784093611;NKX2-3_NKX2-5:-1.85140101589;ZNF384:-1.85820400698;NR5A1,2:-1.85943501567;FOX{I1,J2}:-1.89332519421;HOX{A4,D4}:-1.90085006671;ARID5B:-1.9553570314;ONECUT1,2:-1.98231990822;NKX2-1,4:-1.99434837;T:-2.04701019195;CDC5L:-2.11331998422;TBX4,5:-2.15614518872;NFY{A,B,C}:-2.23019308241;SOX17:-2.24651435583;bHLH_family:-2.25212047782;GFI1:-2.28559443891;NRF1:-2.3106089165;LEF1_TCF7_TCF7L1,2:-2.32050845237;ZNF143:-2.63858109724;LHX3,4:-2.69517806006;PBX1:-2.87376277792
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11861-125A7;search_select_hide=table117:FF:11861-125A7
 }}

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FF:11861-125A7: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:24, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0