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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00005846
|DRA_sample_Accession=CAGE@SAMD00005846
|accession_numbers=CAGE;DRX008135;DRR009007;DRZ000432;DRZ001817
|accession_numbers=CAGE;DRX008135;DRR009007;DRZ000432;DRZ001817;DRZ011782;DRZ013167
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
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|library_id=CNhs13474
|library_id=CNhs13474
|library_id_phase_based=2:CNhs13474
|library_id_phase_based=2:CNhs13474
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11869
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11869
|name=CD14+ monocytes - treated with B-glucan, donor1
|name=CD14+ monocytes - treated with B-glucan, donor1
|namespace=
|namespace=
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|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 97: Line 101:
|top_motifs=NFE2L2:3.61166284728;NFE2:3.55104605596;CEBPA,B_DDIT3:3.40857250745;FOSL2:3.40709924997;BACH2:3.3017291014;FOS_FOS{B,L1}_JUN{B,D}:3.26888706741;SREBF1,2:3.19420498304;PAX2:3.17780067225;HLF:2.96531498198;SPIB:2.95486144479;SPI1:2.90705465126;NFE2L1:2.59025226645;ETS1,2:2.4068483029;NFKB1_REL_RELA:2.39216337574;EP300:2.36302804963;NFIL3:2.27954134901;NANOG{mouse}:2.27210607923;FOXP3:2.24142162368;DMAP1_NCOR{1,2}_SMARC:2.20395921315;ATF5_CREB3:2.13027638746;ATF4:2.04252961487;NR1H4:2.00196566377;FOXN1:1.93241994929;RXRA_VDR{dimer}:1.84556019065;RUNX1..3:1.76707608618;CREB1:1.63780376838;IRF1,2:1.5320736887;ATF6:1.50379210989;ELF1,2,4:1.33450629597;HMX1:1.31100552373;JUN:1.30977403314;MAFB:1.28643074997;PDX1:1.21002632295;TGIF1:1.13524989388;FOXD3:1.124219642;STAT2,4,6:1.08285832148;PPARG:1.06129465816;HMGA1,2:1.03056980438;PAX3,7:0.998401433916;IRF7:0.996765426132;BPTF:0.944664445439;ALX4:0.917199936237;PITX1..3:0.896884813662;HIF1A:0.837887252296;TFCP2:0.821042421757;ALX1:0.73136742442;HSF1,2:0.727124854331;GLI1..3:0.724448029159;ATF2:0.671488032631;ZBTB16:0.664503685516;NFATC1..3:0.589634605891;HES1:0.548245619042;HOX{A5,B5}:0.526691422911;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.519491934968;PAX8:0.509346423661;SMAD1..7,9:0.505376628025;HBP1_HMGB_SSRP1_UBTF:0.488919450891;ESR1:0.486798083613;CDX1,2,4:0.466592486954;ESRRA:0.464271014953;PAX1,9:0.428592868649;NR6A1:0.401401840655;XBP1:0.339959786669;NANOG:0.326620100725;EN1,2:0.253324517817;FOXO1,3,4:0.24862925849;GATA4:0.237906091387;TLX2:0.219187824053;SPZ1:0.218161940163;SRF:0.105956073187;MYB:0.103259189521;IKZF2:0.102918483796;PRDM1:0.102058865291;FOXM1:-0.00190186591304;FOXP1:-0.0324758902498;T:-0.0414813439201;RFX2..5_RFXANK_RFXAP:-0.0574820930814;FOX{D1,D2}:-0.0780638832302;TBP:-0.11718054424;AHR_ARNT_ARNT2:-0.158326063852;PAX4:-0.160275326485;DBP:-0.162078992935;FOXL1:-0.233049337615;HOXA9_MEIS1:-0.257829378694;MEF2{A,B,C,D}:-0.257996054461;NKX2-2,8:-0.306943014314;STAT5{A,B}:-0.313844463341;FOX{F1,F2,J1}:-0.31412976248;POU2F1..3:-0.330701333592;IKZF1:-0.352316832465;POU5F1:-0.394229539298;MZF1:-0.431203610423;OCT4_SOX2{dimer}:-0.437136566013;NFIX:-0.469722765633;TFAP4:-0.507119331724;EGR1..3:-0.521979497945;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.584794748406;TBX4,5:-0.585428783849;NKX3-1:-0.700558535369;RREB1:-0.706774783453;HNF4A_NR2F1,2:-0.721283512584;REST:-0.744140378108;MYFfamily:-0.780345708591;RXR{A,B,G}:-0.786298993411;NKX3-2:-0.80898577301;ZNF148:-0.852241138074;HNF1A:-0.856364690651;PAX6:-0.873526826051;VSX1,2:-0.874356213925;POU6F1:-0.876790227365;PATZ1:-0.879238077041;ZNF238:-0.886535768297;ZBTB6:-0.905790612311;TAL1_TCF{3,4,12}:-0.911029782722;SOX2:-0.955014699398;GZF1:-1.00035617283;NHLH1,2:-1.04594620284;MED-1{core}:-1.06906520564;MTE{core}:-1.10608345533;PRRX1,2:-1.12423027442;TFAP2{A,C}:-1.14470764251;GTF2A1,2:-1.1574068127;ZIC1..3:-1.1891720721;GATA6:-1.19115444561;NKX6-1,2:-1.1985081874;STAT1,3:-1.21202225984;ZFP161:-1.21900986693;MYOD1:-1.26067921393;TEF:-1.2688009253;CUX2:-1.30327716411;GCM1,2:-1.320386283;TLX1..3_NFIC{dimer}:-1.36427603105;RFX1:-1.38706517703;UFEwm:-1.38819980441;TOPORS:-1.38944873748;MTF1:-1.39854978357;SOX5:-1.40467833191;XCPE1{core}:-1.41780896499;FOXA2:-1.43595114705;RBPJ:-1.45068366206;TFAP2B:-1.46422459567;SP1:-1.46828606297;NR3C1:-1.47894641476;TEAD1:-1.4798095954;TFDP1:-1.51053064238;TP53:-1.51116108276;ONECUT1,2:-1.52080382856;AIRE:-1.52258867188;EBF1:-1.52913652078;SOX{8,9,10}:-1.53205399507;ZEB1:-1.54729889048;ZNF384:-1.54847997971;E2F1..5:-1.56323009308;KLF4:-1.56458766563;GTF2I:-1.57030226706;ZNF423:-1.57072865057;MAZ:-1.57705200378;CRX:-1.58865636449;ARID5B:-1.59062872419;POU3F1..4:-1.59572232044;RORA:-1.62751802108;NKX2-1,4:-1.63411047257;HOX{A4,D4}:-1.64707570367;EVI1:-1.71743249275;ELK1,4_GABP{A,B1}:-1.74300240721;SNAI1..3:-1.78915629408;HOX{A6,A7,B6,B7}:-1.79926235533;HIC1:-1.8030398169;BREu{core}:-1.83239204245;ADNP_IRX_SIX_ZHX:-1.8615717442;NKX2-3_NKX2-5:-1.87534940053;CDC5L:-1.9603260806;LMO2:-2.01830929016;MYBL2:-2.06874930295;FOX{I1,J2}:-2.0843753093;PAX5:-2.10908980943;AR:-2.17842156428;POU1F1:-2.26311869721;SOX17:-2.27511709747;NR5A1,2:-2.29375348657;bHLH_family:-2.29669033371;GFI1B:-2.31755028792;FOXQ1:-2.36686121165;NFY{A,B,C}:-2.48001614935;YY1:-2.48197780544;PBX1:-2.48821924873;LHX3,4:-2.64153840148;HAND1,2:-2.71457709503;GFI1:-2.7360234283;NRF1:-2.78062441828;ZNF143:-3.21365850472;LEF1_TCF7_TCF7L1,2:-3.43315726121
|top_motifs=NFE2L2:3.61166284728;NFE2:3.55104605596;CEBPA,B_DDIT3:3.40857250745;FOSL2:3.40709924997;BACH2:3.3017291014;FOS_FOS{B,L1}_JUN{B,D}:3.26888706741;SREBF1,2:3.19420498304;PAX2:3.17780067225;HLF:2.96531498198;SPIB:2.95486144479;SPI1:2.90705465126;NFE2L1:2.59025226645;ETS1,2:2.4068483029;NFKB1_REL_RELA:2.39216337574;EP300:2.36302804963;NFIL3:2.27954134901;NANOG{mouse}:2.27210607923;FOXP3:2.24142162368;DMAP1_NCOR{1,2}_SMARC:2.20395921315;ATF5_CREB3:2.13027638746;ATF4:2.04252961487;NR1H4:2.00196566377;FOXN1:1.93241994929;RXRA_VDR{dimer}:1.84556019065;RUNX1..3:1.76707608618;CREB1:1.63780376838;IRF1,2:1.5320736887;ATF6:1.50379210989;ELF1,2,4:1.33450629597;HMX1:1.31100552373;JUN:1.30977403314;MAFB:1.28643074997;PDX1:1.21002632295;TGIF1:1.13524989388;FOXD3:1.124219642;STAT2,4,6:1.08285832148;PPARG:1.06129465816;HMGA1,2:1.03056980438;PAX3,7:0.998401433916;IRF7:0.996765426132;BPTF:0.944664445439;ALX4:0.917199936237;PITX1..3:0.896884813662;HIF1A:0.837887252296;TFCP2:0.821042421757;ALX1:0.73136742442;HSF1,2:0.727124854331;GLI1..3:0.724448029159;ATF2:0.671488032631;ZBTB16:0.664503685516;NFATC1..3:0.589634605891;HES1:0.548245619042;HOX{A5,B5}:0.526691422911;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.519491934968;PAX8:0.509346423661;SMAD1..7,9:0.505376628025;HBP1_HMGB_SSRP1_UBTF:0.488919450891;ESR1:0.486798083613;CDX1,2,4:0.466592486954;ESRRA:0.464271014953;PAX1,9:0.428592868649;NR6A1:0.401401840655;XBP1:0.339959786669;NANOG:0.326620100725;EN1,2:0.253324517817;FOXO1,3,4:0.24862925849;GATA4:0.237906091387;TLX2:0.219187824053;SPZ1:0.218161940163;SRF:0.105956073187;MYB:0.103259189521;IKZF2:0.102918483796;PRDM1:0.102058865291;FOXM1:-0.00190186591304;FOXP1:-0.0324758902498;T:-0.0414813439201;RFX2..5_RFXANK_RFXAP:-0.0574820930814;FOX{D1,D2}:-0.0780638832302;TBP:-0.11718054424;AHR_ARNT_ARNT2:-0.158326063852;PAX4:-0.160275326485;DBP:-0.162078992935;FOXL1:-0.233049337615;HOXA9_MEIS1:-0.257829378694;MEF2{A,B,C,D}:-0.257996054461;NKX2-2,8:-0.306943014314;STAT5{A,B}:-0.313844463341;FOX{F1,F2,J1}:-0.31412976248;POU2F1..3:-0.330701333592;IKZF1:-0.352316832465;POU5F1:-0.394229539298;MZF1:-0.431203610423;OCT4_SOX2{dimer}:-0.437136566013;NFIX:-0.469722765633;TFAP4:-0.507119331724;EGR1..3:-0.521979497945;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.584794748406;TBX4,5:-0.585428783849;NKX3-1:-0.700558535369;RREB1:-0.706774783453;HNF4A_NR2F1,2:-0.721283512584;REST:-0.744140378108;MYFfamily:-0.780345708591;RXR{A,B,G}:-0.786298993411;NKX3-2:-0.80898577301;ZNF148:-0.852241138074;HNF1A:-0.856364690651;PAX6:-0.873526826051;VSX1,2:-0.874356213925;POU6F1:-0.876790227365;PATZ1:-0.879238077041;ZNF238:-0.886535768297;ZBTB6:-0.905790612311;TAL1_TCF{3,4,12}:-0.911029782722;SOX2:-0.955014699398;GZF1:-1.00035617283;NHLH1,2:-1.04594620284;MED-1{core}:-1.06906520564;MTE{core}:-1.10608345533;PRRX1,2:-1.12423027442;TFAP2{A,C}:-1.14470764251;GTF2A1,2:-1.1574068127;ZIC1..3:-1.1891720721;GATA6:-1.19115444561;NKX6-1,2:-1.1985081874;STAT1,3:-1.21202225984;ZFP161:-1.21900986693;MYOD1:-1.26067921393;TEF:-1.2688009253;CUX2:-1.30327716411;GCM1,2:-1.320386283;TLX1..3_NFIC{dimer}:-1.36427603105;RFX1:-1.38706517703;UFEwm:-1.38819980441;TOPORS:-1.38944873748;MTF1:-1.39854978357;SOX5:-1.40467833191;XCPE1{core}:-1.41780896499;FOXA2:-1.43595114705;RBPJ:-1.45068366206;TFAP2B:-1.46422459567;SP1:-1.46828606297;NR3C1:-1.47894641476;TEAD1:-1.4798095954;TFDP1:-1.51053064238;TP53:-1.51116108276;ONECUT1,2:-1.52080382856;AIRE:-1.52258867188;EBF1:-1.52913652078;SOX{8,9,10}:-1.53205399507;ZEB1:-1.54729889048;ZNF384:-1.54847997971;E2F1..5:-1.56323009308;KLF4:-1.56458766563;GTF2I:-1.57030226706;ZNF423:-1.57072865057;MAZ:-1.57705200378;CRX:-1.58865636449;ARID5B:-1.59062872419;POU3F1..4:-1.59572232044;RORA:-1.62751802108;NKX2-1,4:-1.63411047257;HOX{A4,D4}:-1.64707570367;EVI1:-1.71743249275;ELK1,4_GABP{A,B1}:-1.74300240721;SNAI1..3:-1.78915629408;HOX{A6,A7,B6,B7}:-1.79926235533;HIC1:-1.8030398169;BREu{core}:-1.83239204245;ADNP_IRX_SIX_ZHX:-1.8615717442;NKX2-3_NKX2-5:-1.87534940053;CDC5L:-1.9603260806;LMO2:-2.01830929016;MYBL2:-2.06874930295;FOX{I1,J2}:-2.0843753093;PAX5:-2.10908980943;AR:-2.17842156428;POU1F1:-2.26311869721;SOX17:-2.27511709747;NR5A1,2:-2.29375348657;bHLH_family:-2.29669033371;GFI1B:-2.31755028792;FOXQ1:-2.36686121165;NFY{A,B,C}:-2.48001614935;YY1:-2.48197780544;PBX1:-2.48821924873;LHX3,4:-2.64153840148;HAND1,2:-2.71457709503;GFI1:-2.7360234283;NRF1:-2.78062441828;ZNF143:-3.21365850472;LEF1_TCF7_TCF7L1,2:-3.43315726121
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11869-125B6;search_select_hide=table117:FF:11869-125B6
}}
}}

Latest revision as of 18:25, 4 June 2020

Name:CD14+ monocytes - treated with B-glucan, donor1
Species:Human (Homo sapiens)
Library ID:CNhs13474
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueNA
dev stageNA
sexmale
age51
cell typemonocyte
cell lineNA
companyNA
collaborationChristine Wells (University of Queensland)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberD3-10
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005846
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13474 CAGE DRX008135 DRR009007
Accession ID Hg19

Library idBAMCTSS
CNhs13474 DRZ000432 DRZ001817
Accession ID Hg38

Library idBAMCTSS
CNhs13474 DRZ011782 DRZ013167
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0.419
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.0658
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.604
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.496
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0908
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0.0908
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.285
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.456
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.833
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.166
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.419
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0.285
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0.0908
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.402
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.392
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0875
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.695
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.285
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0.335
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.395
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.23
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.25
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0.538
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.813
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0.335
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.898
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.462
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.536
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.936
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.522
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.285
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.441
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.674
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0.23
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.353
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.74
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.74
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340.285
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.835
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.285
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.166
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.663
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0.23
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.411
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0.23
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0.848
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0.23
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.23
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.166
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340.23
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0.23
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13474

Jaspar motifP-value
MA0002.28.23847e-8
MA0003.10.366
MA0004.10.323
MA0006.10.946
MA0007.10.689
MA0009.10.224
MA0014.11
MA0017.10.0559
MA0018.20.12
MA0019.10.513
MA0024.10.00154
MA0025.10.00697
MA0027.10.848
MA0028.10.127
MA0029.10.244
MA0030.10.146
MA0031.10.322
MA0035.20.237
MA0038.10.102
MA0039.20.732
MA0040.10.456
MA0041.10.549
MA0042.10.71
MA0043.15.86409e-6
MA0046.10.0102
MA0047.20.604
MA0048.10.792
MA0050.13.39288e-5
MA0051.10.045
MA0052.10.0422
MA0055.10.951
MA0057.10.545
MA0058.10.143
MA0059.10.19
MA0060.14.04544e-11
MA0061.11.1148e-7
MA0062.20.642
MA0065.20.0101
MA0066.10.0244
MA0067.14.15791e-5
MA0068.10.199
MA0069.10.729
MA0070.10.0207
MA0071.10.304
MA0072.10.903
MA0073.10.416
MA0074.10.112
MA0076.10.103
MA0077.10.19
MA0078.10.436
MA0079.20.298
MA0080.22.66749e-14
MA0081.12.38443e-4
MA0083.10.77
MA0084.10.753
MA0087.10.966
MA0088.10.54
MA0090.10.224
MA0091.10.537
MA0092.10.287
MA0093.10.361
MA0099.24.73723e-41
MA0100.10.646
MA0101.11.23186e-7
MA0102.21.67667e-8
MA0103.10.365
MA0104.20.584
MA0105.17.57421e-11
MA0106.10.79
MA0107.13.0725e-9
MA0108.20.0647
MA0111.10.509
MA0112.25.05272e-5
MA0113.10.934
MA0114.10.154
MA0115.10.884
MA0116.13.64894e-4
MA0117.10.16
MA0119.10.246
MA0122.10.928
MA0124.10.572
MA0125.10.225
MA0131.10.45
MA0135.10.631
MA0136.14.6437e-15
MA0137.20.728
MA0138.20.897
MA0139.10.93
MA0140.10.153
MA0141.10.0887
MA0142.10.699
MA0143.10.825
MA0144.10.158
MA0145.10.258
MA0146.10.118
MA0147.10.679
MA0148.10.574
MA0149.10.18
MA0150.12.0963e-18
MA0152.10.787
MA0153.10.001
MA0154.10.00114
MA0155.10.685
MA0156.11.17605e-7
MA0157.10.879
MA0159.10.0194
MA0160.10.0419
MA0162.10.725
MA0163.14.19248e-8
MA0164.10.532
MA0258.10.00386
MA0259.10.674



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13474

Novel motifP-value
10.118
100.0212
1000.899
1010.849
1020.726
1030.273
1040.562
1050.182
1065.28675e-4
1070.168
1080.935
1090.241
110.136
1100.24
1110.0283
1120.305
1130.517
1140.0107
1150.23
1160.786
1170.0415
1180.179
1190.123
120.311
1200.948
1210.623
1220.7
1230.0762
1240.544
1250.374
1260.171
1270.358
1280.0241
1290.447
130.154
1300.16
1310.76
1320.0719
1330.805
1340.495
1350.584
1360.934
1370.0121
1380.269
1390.0385
140.433
1400.117
1410.266
1420.0907
1430.0157
1440.564
1450.365
1460.545
1470.544
1480.00776
1490.651
150.169
1500.463
1510.333
1520.157
1530.514
1540.635
1550.619
1560.528
1570.368
1580.038
1590.473
160.319
1600.373
1610.521
1620.412
1630.14
1640.073
1650.196
1660.614
1670.219
1680.263
1690.00637
170.164
180.113
190.336
20.838
200.284
210.525
220.242
230.042
240.322
250.425
260.035
270.795
280.458
290.24
30.0916
300.49
310.714
320.933
330.334
340.547
350.116
360.124
370.0729
380.348
390.782
40.975
400.172
410.00682
420.378
430.0315
440.942
450.672
460.14
470.518
480.439
490.106
50.259
500.969
510.398
520.315
530.391
540.339
550.43
560.607
570.814
580.141
590.134
60.541
600.0447
610.636
620.0649
630.472
640.4
650.206
660.212
670.454
680.666
690.556
70.275
700.0219
710.0285
720.283
730.134
740.0798
750.0915
760.181
770.401
780.102
790.344
80.336
800.311
810.364
820.107
830.0518
840.233
850.0115
860.051
870.523
880.641
890.164
90.37
900.0615
910.313
920.219
930.579
940.0399
950.315
960.36
970.809
980.109
990.0996



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13474


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000630 (beta-glucan treatment sample)
0011102 (human CD14-positive monocytes - treated with B-glucan sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

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