FF:11878-125C6: Difference between revisions

Latest revision as of 18:25, 4 June 2020

Name:	CD14+ monocytes - treated with Candida, donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs13488
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	male
age	51
cell type	monocyte
cell line	NA
company	NA
collaboration	Christine Wells (University of Queensland)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	D4-9
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005082

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13488		CAGE		DRX008142		DRR009014

Accession ID Hg19

Library id		BAM		CTSS
CNhs13488		DRZ000439		DRZ001824

Accession ID Hg38

Library id		BAM		CTSS
CNhs13488		DRZ011789		DRZ013174

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0.973
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.132
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.626
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.47
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.0686
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.216
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.71
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.216
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.942
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0.688
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.504
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.49
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.688
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.27
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.468
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.451
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.36
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.249
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0.415
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.925
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0.468
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.922
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.688
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.689
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.909
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.742
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.36
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.628
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.642
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0.554
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.557
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.705
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.782
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.36
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.659
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.216
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.626
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0.216
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.36
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0.468
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0.742
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0.36
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.175
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.216
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.36
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.216
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13488

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	4.42545e-8
MA0003.1	MA0003.1	0.94
MA0004.1	MA0004.1	0.0712
MA0006.1	MA0006.1	0.63
MA0007.1	MA0007.1	0.908
MA0009.1	MA0009.1	0.437
MA0014.1	MA0014.1	0.805
MA0017.1	MA0017.1	0.26
MA0018.2	MA0018.2	0.0135
MA0019.1	MA0019.1	0.567
MA0024.1	MA0024.1	0.00545
MA0025.1	MA0025.1	6.34523e-4
MA0027.1	MA0027.1	0.956
MA0028.1	MA0028.1	0.101
MA0029.1	MA0029.1	0.116
MA0030.1	MA0030.1	0.153
MA0031.1	MA0031.1	0.356
MA0035.2	MA0035.2	0.285
MA0038.1	MA0038.1	0.695
MA0039.2	MA0039.2	0.716
MA0040.1	MA0040.1	0.79
MA0041.1	MA0041.1	0.775
MA0042.1	MA0042.1	0.433
MA0043.1	MA0043.1	5.52544e-9
MA0046.1	MA0046.1	0.012
MA0047.2	MA0047.2	0.314
MA0048.1	MA0048.1	0.53
MA0050.1	MA0050.1	5.1182e-8
MA0051.1	MA0051.1	0.00244
MA0052.1	MA0052.1	7.75486e-4
MA0055.1	MA0055.1	0.374
MA0057.1	MA0057.1	0.304
MA0058.1	MA0058.1	0.0119
MA0059.1	MA0059.1	0.0489
MA0060.1	MA0060.1	1.26584e-6
MA0061.1	MA0061.1	1.2398e-15
MA0062.2	MA0062.2	0.699
MA0065.2	MA0065.2	0.0371
MA0066.1	MA0066.1	0.0546
MA0067.1	MA0067.1	2.08636e-7
MA0068.1	MA0068.1	0.539
MA0069.1	MA0069.1	0.837
MA0070.1	MA0070.1	0.0226
MA0071.1	MA0071.1	0.339
MA0072.1	MA0072.1	0.473
MA0073.1	MA0073.1	0.462
MA0074.1	MA0074.1	0.106
MA0076.1	MA0076.1	0.117
MA0077.1	MA0077.1	0.314
MA0078.1	MA0078.1	0.442
MA0079.2	MA0079.2	0.133
MA0080.2	MA0080.2	4.96701e-11
MA0081.1	MA0081.1	5.44203e-4
MA0083.1	MA0083.1	0.898
MA0084.1	MA0084.1	0.578
MA0087.1	MA0087.1	0.779
MA0088.1	MA0088.1	0.587
MA0090.1	MA0090.1	0.522
MA0091.1	MA0091.1	0.762
MA0092.1	MA0092.1	0.45
MA0093.1	MA0093.1	0.0848
MA0099.2	MA0099.2	4.43934e-46
MA0100.1	MA0100.1	0.776
MA0101.1	MA0101.1	5.55384e-17
MA0102.2	MA0102.2	2.09136e-8
MA0103.1	MA0103.1	0.0701
MA0104.2	MA0104.2	0.0519
MA0105.1	MA0105.1	5.20781e-22
MA0106.1	MA0106.1	0.815
MA0107.1	MA0107.1	3.78528e-20
MA0108.2	MA0108.2	0.741
MA0111.1	MA0111.1	0.542
MA0112.2	MA0112.2	3.22518e-4
MA0113.1	MA0113.1	0.829
MA0114.1	MA0114.1	0.274
MA0115.1	MA0115.1	0.549
MA0116.1	MA0116.1	7.35272e-4
MA0117.1	MA0117.1	0.0245
MA0119.1	MA0119.1	0.168
MA0122.1	MA0122.1	0.658
MA0124.1	MA0124.1	0.247
MA0125.1	MA0125.1	0.186
MA0131.1	MA0131.1	0.421
MA0135.1	MA0135.1	0.283
MA0136.1	MA0136.1	3.95279e-12
MA0137.2	MA0137.2	0.258
MA0138.2	MA0138.2	0.32
MA0139.1	MA0139.1	0.851
MA0140.1	MA0140.1	0.436
MA0141.1	MA0141.1	0.156
MA0142.1	MA0142.1	0.525
MA0143.1	MA0143.1	0.929
MA0144.1	MA0144.1	0.146
MA0145.1	MA0145.1	0.716
MA0146.1	MA0146.1	0.649
MA0147.1	MA0147.1	0.112
MA0148.1	MA0148.1	0.578
MA0149.1	MA0149.1	0.201
MA0150.1	MA0150.1	4.07598e-22
MA0152.1	MA0152.1	1
MA0153.1	MA0153.1	0.00318
MA0154.1	MA0154.1	1.47969e-4
MA0155.1	MA0155.1	0.863
MA0156.1	MA0156.1	3.72868e-8
MA0157.1	MA0157.1	0.915
MA0159.1	MA0159.1	0.0407
MA0160.1	MA0160.1	0.0384
MA0162.1	MA0162.1	0.597
MA0163.1	MA0163.1	2.01423e-7
MA0164.1	MA0164.1	0.609
MA0258.1	MA0258.1	0.0168
MA0259.1	MA0259.1	0.882

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13488

Novel motif	Logo	P-value
1	1	0.117
10	10	0.018
100	100	0.896
101	101	0.828
102	102	0.899
103	103	0.331
104	104	0.538
105	105	0.0689
106	106	0.00123
107	107	0.389
108	108	0.633
109	109	0.431
11	11	0.225
110	110	0.158
111	111	0.0987
112	112	0.373
113	113	0.51
114	114	0.0357
115	115	0.197
116	116	0.987
117	117	0.0746
118	118	0.228
119	119	0.137
12	12	0.307
120	120	0.944
121	121	0.503
122	122	0.563
123	123	0.359
124	124	0.616
125	125	0.335
126	126	0.27
127	127	0.592
128	128	0.0493
129	129	0.471
13	13	0.0834
130	130	0.245
131	131	0.969
132	132	0.0392
133	133	0.67
134	134	0.585
135	135	0.932
136	136	0.941
137	137	0.0363
138	138	0.373
139	139	0.0824
14	14	0.549
140	140	0.195
141	141	0.306
142	142	0.01
143	143	0.0213
144	144	0.626
145	145	0.455
146	146	0.817
147	147	0.678
148	148	0.0195
149	149	0.885
15	15	0.198
150	150	0.353
151	151	0.528
152	152	0.433
153	153	0.615
154	154	0.657
155	155	0.989
156	156	0.764
157	157	0.403
158	158	0.0179
159	159	0.305
16	16	0.409
160	160	0.434
161	161	0.444
162	162	0.189
163	163	0.0932
164	164	0.113
165	165	0.326
166	166	0.642
167	167	0.147
168	168	0.169
169	169	0.0324
17	17	0.262
18	18	0.103
19	19	0.57
2	2	0.376
20	20	0.191
21	21	0.742
22	22	0.41
23	23	0.0667
24	24	0.445
25	25	0.498
26	26	0.075
27	27	0.448
28	28	0.436
29	29	0.259
3	3	0.182
30	30	0.428
31	31	0.773
32	32	0.373
33	33	0.285
34	34	0.844
35	35	0.106
36	36	0.0561
37	37	0.0767
38	38	0.359
39	39	0.911
4	4	0.837
40	40	0.181
41	41	0.0125
42	42	0.39
43	43	0.0254
44	44	0.5
45	45	0.852
46	46	0.229
47	47	0.678
48	48	0.591
49	49	0.12
5	5	0.338
50	50	0.972
51	51	0.588
52	52	0.458
53	53	0.623
54	54	0.503
55	55	0.613
56	56	0.683
57	57	0.839
58	58	0.199
59	59	0.333
6	6	0.836
60	60	0.0787
61	61	0.621
62	62	0.124
63	63	0.616
64	64	0.435
65	65	0.269
66	66	0.305
67	67	0.482
68	68	0.803
69	69	0.447
7	7	0.255
70	70	0.0819
71	71	0.0297
72	72	0.166
73	73	0.204
74	74	0.0485
75	75	0.153
76	76	0.104
77	77	0.707
78	78	0.116
79	79	0.602
8	8	0.415
80	80	0.251
81	81	0.354
82	82	0.306
83	83	0.00723
84	84	0.109
85	85	0.054
86	86	0.0474
87	87	0.655
88	88	0.786
89	89	0.311
9	9	0.483
90	90	0.163
91	91	0.316
92	92	0.37
93	93	0.414
94	94	0.0982
95	95	0.502
96	96	0.482
97	97	0.553
98	98	0.165
99	99	0.0271

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13488

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011104 human CD14-positive monocytes - treated with Candida sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000635 (Candida treatment sample)
0011104 (human CD14-positive monocytes - treated with Candida sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004765,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405,UBERON:0003081,UBERON:0006603,UBERON:0003061
+|DRA_sample_Accession=CAGE@SAMD00005082
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000839,CL:0000548,CL:0002194,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000766,CL:0000219,CL:0000004,CL:0000134,CL:0000738,CL:0002087,CL:0000255,CL:0002031,CL:0000576,CL:0000037,CL:0000860,CL:0000566,CL:0000049,CL:0000557,CL:0000837,CL:0002057,CL:0002009,CL:0000040,CL:0000559
+|accession_numbers=CAGE;DRX008142;DRR009014;DRZ000439;DRZ001824;DRZ011789;DRZ013174
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000625,FF:0000350,FF:0000635,FF:0011104
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.51!3219.03!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.69!486.05!SPI1;;chr16:85932760..85932775,+!p1@IRF8!2.60!400.85!IRF8;;chr7:115670804..115670825,-!p1@TFEC!2.53!336.94!TFEC;;chr10:64018918..64018936,+!p2@ZNF365!2.34!217.53!ZNF365;;chr3:101546827..101546847,+!p2@NFKBIZ!2.24!238.18!NFKBIZ;;chr12:54778471..54778528,-!p1@ZNF385A!2.22!163.31!ZNF385A;;chr9:102584159..102584174,+!p2@NR4A3!2.20!273.69!NR4A3;;chr14:35872453..35872485,-!p2@NFKBIA!2.18!353.73!NFKBIA;;chr2:157189180..157189290,-!p1@NR4A2!2.13!655.81!NR4A2;;chr12:72056800..72056834,+!p1@THAP2!2.13!177.51!THAP2;;chr11:47399947..47399961,-!p3@SPI1!2.12!129.74!SPI1;;chr6:106534192..106534224,+!p1@PRDM1!2.10!341.46!PRDM1;;chr19:45971246..45971265,+!p1@FOSB!2.09!2119.13!FOSB;;chr10:35484053..35484076,+!p1@CREM!2.08!284.66!CREM;;chr10:64576105..64576133,-!p1@EGR2!2.08!239.47!EGR2;;chr14:35873947..35873965,-!p1@NFKBIA!2.05!6476.79!NFKBIA;;chr9:102584262..102584276,+!p1@NR4A3!2.05!238.83!NR4A3;;chr11:47400062..47400077,-!p2@SPI1!2.04!107.80!SPI1;;chr20:39317868..39317884,-!p1@MAFB!2.02!1156.06!MAFB;;chr3:101568349..101568365,+!p1@NFKBIZ!2.01!4923.11!NFKBIZ;;chr12:52445218..52445237,+!p1@NR4A1!1.99!1154.77!NR4A1;;chr16:31885093..31885165,+!p1@ZNF267!1.97!1310.33!ZNF267;;chr2:70142232..70142251,+!p1@MXD1!1.93!444.09!MXD1;;chr11:47399996..47400014,-!p4@SPI1!1.93!83.27!SPI1;;chr21:34442439..34442455,+!p1@OLIG1!1.91!80.04!OLIG1;;chr2:61108695..61108753,+!p1@REL!1.89!493.80!REL;;chr2:68592394..68592405,+!p2@PLEK!1.89!76.81!PLEK;;chr4:103422499..103422632,+!p1@NFKB1!1.87!1435.56!NFKB1;;chr19:54041669..54041697,+!p2@ZNF331!1.87!73.59!ZNF331;;chr8:22550982..22550999,-!p1@EGR3!1.84!184.61!EGR3;;chr19:54058073..54058088,+!p1@ZNF331!1.82!64.55!ZNF331;;chr19:36391434..36391450,-!p1@NFKBID!1.81!122.00!NFKBID;;chr2:192015701..192015743,-!p1@STAT4!1.81!85.20!STAT4;;chr11:47400032..47400043,-!p5@SPI1!1.81!63.26!SPI1;;chr10:51572408..51572454,+!p3@NCOA4!1.79!338.23!NCOA4;;chr6:106534230..106534254,+!p2@PRDM1!1.78!142.65!PRDM1;;chr12:72056749..72056767,+!p6@THAP2!1.78!65.19!THAP2;;chr9:102584128..102584144,+!p3@NR4A3!1.75!101.99!NR4A3;;chr10:31288398..31288455,-!p2@ZNF438!1.75!64.55!ZNF438;;chr22:38597987..38598021,+!p2@MAFF!1.74!311.77!MAFF;;chr20:48599506..48599526,+!p1@SNAI1!1.73!323.39!SNAI1;;chr10:31288370..31288393,-!p3@ZNF438!1.72!50.99!ZNF438;;chr1:212782094..212782109,+!p1@ATF3!1.66!1150.90!ATF3;;chr2:145277640..145277771,-!p1@ZEB2!1.66!564.15!ZEB2;;chr10:104155480..104155534,+!p2@NFKB2!1.66!278.20!NFKB2;;chr12:72056773..72056796,+!p3@THAP2!1.66!57.45!THAP2;;chr2:68615063..68615089,+!p4@PLEK!1.66!44.54!PLEK;;chr8:123793988..123794016,+!p1@ZHX2!1.65!74.88!ZHX2;;chr9:102584241..102584261,+!p4@NR4A3!1.65!66.48!NR4A3;;chr12:54778351..54778378,-!p6@ZNF385A!1.65!43.89!ZNF385A;;chrX:153305787..153305807,-!p3@MECP2!1.64!42.60!MECP2;;chr1:37940170..37940190,+!p1@ZC3H12A!1.63!481.53!ZC3H12A;;chr6:391743..391759,+!p1@IRF4!1.63!41.96!IRF4;;chr2:145275162..145275202,-!p2@ZEB2!1.62!227.21!ZEB2;;chr4:83822199..83822239,+!p2@THAP9!1.62!47.77!THAP9;;chr10:51572339..51572376,+!p4@NCOA4!1.61!87.14!NCOA4;;chr14:35872962..35873025,-!p3@NFKBIA!1.59!92.30!NFKBIA;;chr1:25256756..25256774,-!p1@RUNX3!1.59!69.71!RUNX3;;chr6:144385698..144385742,-!p2@PLAGL1!1.59!45.83!PLAGL1;;chr9:129567282..129567353,+!p1@ZBTB43!1.57!453.13!ZBTB43;;chr21:30671235..30671253,+!p1@BACH1!1.57!435.70!BACH1;;chr6:12012170..12012245,+!p1@HIVEP1!1.56!170.41!HIVEP1;;chr14:35872494..35872511,-!p5@NFKBIA!1.56!46.47!NFKBIA;;chr7:50344289..50344323,+!p1@IKZF1!1.56!35.50!IKZF1;;chrX:153305962..153305995,-!p5@MECP2!1.56!35.50!MECP2;;chr10:35484090..35484104,+!p6@CREM!1.55!34.86!CREM;;chr4:106068026..106068084,+!p1@TET2!1.52!278.20!TET2;;chr13:41593425..41593480,-!p1@ELF1!1.50!188.48!ELF1;;chr21:30671690..30671762,+!p2@BACH1!1.50!101.99!BACH1;;chr5:142782823..142782854,-!p3@NR3C1!1.50!43.25!NR3C1;;chrX:129244454..129244488,-!p1@ELF4!1.49!205.26!ELF4;;chr10:104154246..104154347,+!p3@NFKB2!1.49!178.15!NFKB2;;chr21:40177845..40177863,+!p1@ETS2!1.48!1644.69!ETS2;;chr18:77155922..77155939,+!p1@NFATC1!1.48!77.46!NFATC1;;chr2:61108808..61108821,+!p3@REL!1.48!36.79!REL;;chr2:68615031..68615055,+!p3@PLEK!1.48!29.05!PLEK;;chr19:47616992..47617011,-!p4@ZC3H4!1.47!59.38!ZC3H4;;chr6:12012249..12012266,+!p5@HIVEP1!1.47!48.41!HIVEP1;;chr4:103423079..103423112,+!p4@NFKB1!1.47!28.40!NFKB1;;chr6:15246200..15246214,+!p2@JARID2!1.46!75.52!JARID2;;chr18:3448455..3448480,+!p5@TGIF1!1.46!50.35!TGIF1;;chr14:35872926..35872951,-!p4@NFKBIA!1.45!38.08!NFKBIA;;chr13:41593392..41593403,-!p7@ELF1!1.44!26.46!ELF1;;chr8:53373491..53373506,-!p4@ST18!1.44!26.46!ST18;;chr10:3827371..3827386,-!p2@KLF6!1.43!211.72!KLF6;;chr1:161736038..161736056,+!p4@ATF6!1.43!59.38!ATF6;;chr19:50432132..50432217,+!p2@ATF5!1.43!30.98!ATF5;;chr2:191885737..191885750,-!p4@STAT1!1.41!24.53!STAT1;;chr2:97202480..97202499,+!p1@ARID5A!1.40!233.02!ARID5A;;chr10:35484804..35484902,+!p2@CREM!1.40!89.08!CREM;;chr3:150126101.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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
+|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=FF:0000625,FF:0000635,FF:0011104,FF:11878-125C6
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Candida%252c%2520donor2.CNhs13488.11878-125C6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Candida%252c%2520donor2.CNhs13488.11878-125C6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Candida%252c%2520donor2.CNhs13488.11878-125C6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Candida%252c%2520donor2.CNhs13488.11878-125C6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Candida%252c%2520donor2.CNhs13488.11878-125C6.hg38.nobarcode.ctss.bed.gz
 |id=FF:11878-125C6
 |is_a=EFO:0002091;;FF:0011104
 |is_obsolete=
+|library_id=CNhs13488
+|library_id_phase_based=2:CNhs13488
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11878
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11878
 |name=CD14+ monocytes - treated with Candida, donor2
 |namespace=
@@ Line 43: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13488,LSID1025,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=125
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@@ Line 58: / Line 79: @@
 |rna_weight_ug=3.287565
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+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 79: / Line 101: @@
 |top_motifs=FOSL2:6.52050805241;BACH2:6.2184198577;FOS_FOS{B,L1}_JUN{B,D}:6.12969421626;NFE2:6.10434856268;HLF:5.36646609595;NFE2L2:5.03989565259;PAX2:4.82385842633;CEBPA,B_DDIT3:4.71831693999;SREBF1,2:4.51878434348;NFKB1_REL_RELA:4.292479978;ATF4:3.91992037008;FOXP3:3.72977278338;NR1H4:3.66720179775;ATF5_CREB3:3.66670257545;NFIL3:3.6437675849;SPIB:3.6095595279;HSF1,2:3.45263831776;NFATC1..3:3.1802021358;JUN:3.17629157198;NANOG{mouse}:3.13740749297;SPI1:3.04438663053;CREB1:3.04267853809;ETS1,2:2.97576815481;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.90910136391;PAX3,7:2.86395492417;ATF6:2.80807382796;MAFB:2.7995993143;PAX8:2.70706902622;IRF7:2.69794026072;HOX{A5,B5}:2.57337538919;RUNX1..3:2.55827963562;NFE2L1:2.5312406569;IRF1,2:2.43565954293;DMAP1_NCOR{1,2}_SMARC:2.31830497235;ATF2:2.09828199002;STAT5{A,B}:2.02404853519;FOXN1:1.96155436373;XBP1:1.80403189763;PDX1:1.72366044199;STAT2,4,6:1.66897578869;TGIF1:1.46409286657;FOXO1,3,4:1.2728981511;EP300:1.09019423251;HIF1A:1.06705610028;PAX1,9:1.04865558594;HMGA1,2:1.03256059116;CDX1,2,4:0.944346670791;ELF1,2,4:0.895891491207;RXRA_VDR{dimer}:0.859967147446;ZBTB16:0.799587055391;HOXA9_MEIS1:0.709637760001;TBP:0.557865205843;PAX4:0.523232610717;ALX4:0.300964467142;MEF2{A,B,C,D}:0.290974238476;IKZF1:0.288190172716;RBPJ:0.280317886853;ESR1:0.251936758763;SRF:0.20692589494;EN1,2:0.206314376154;HMX1:0.20274241202;POU5F1:0.183734010147;POU2F1..3:0.172981479851;BPTF:0.167762889666;SMAD1..7,9:0.14781732086;OCT4_SOX2{dimer}:0.130051603681;PRDM1:0.124349872263;GLI1..3:0.108225054335;HES1:0.0690145543377;NANOG:0.0657380614497;IKZF2:0.0437549471622;AHR_ARNT_ARNT2:-0.0542783022872;VSX1,2:-0.059625856556;RORA:-0.073290642685;RFX2..5_RFXANK_RFXAP:-0.103692612918;PPARG:-0.130187686423;NR3C1:-0.154969474142;GATA4:-0.265417442769;POU3F1..4:-0.347568012014;NR6A1:-0.348839014235;HBP1_HMGB_SSRP1_UBTF:-0.426060228955;FOX{D1,D2}:-0.443475007194;EGR1..3:-0.447095003007;SOX2:-0.597402773034;FOXD3:-0.612433020336;MYB:-0.648212294935;TLX2:-0.661634409913;NKX3-1:-0.726363232404;FOXL1:-0.799492949828;PITX1..3:-0.846379071418;DBP:-0.863707276486;STAT1,3:-0.874586793723;NFIX:-0.890031982251;MZF1:-0.913572356759;TFCP2:-0.92678778765;FOXP1:-1.00182342474;PAX6:-1.02018569104;ESRRA:-1.082628918;FOXM1:-1.08990480034;ZNF238:-1.15138276335;ALX1:-1.16482566783;NKX2-1,4:-1.17322896368;MED-1{core}:-1.18860930239;T:-1.23463616903;NHLH1,2:-1.23793205491;HOX{A4,D4}:-1.24012306793;TEF:-1.31280511372;REST:-1.33763009904;PRRX1,2:-1.33879379583;RXR{A,B,G}:-1.3665658438;POU6F1:-1.40508976703;HNF1A:-1.41436128297;SOX5:-1.42528933216;TAL1_TCF{3,4,12}:-1.43024931921;TBX4,5:-1.44115073713;TFDP1:-1.44468066864;FOXA2:-1.45884197156;CUX2:-1.50064322711;GZF1:-1.50471203031;MYFfamily:-1.50789164163;NKX6-1,2:-1.51704195024;GATA6:-1.52091091344;MTE{core}:-1.54753396051;E2F1..5:-1.56805300132;CRX:-1.58658156946;ZNF384:-1.5946156978;HNF4A_NR2F1,2:-1.61547313125;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.6202185926;NKX2-3_NKX2-5:-1.62509470027;BREu{core}:-1.66982311288;ZFP161:-1.71479029815;TFAP2B:-1.76698830019;TEAD1:-1.78245872485;ADNP_IRX_SIX_ZHX:-1.78541658862;RFX1:-1.82937327773;FOX{F1,F2,J1}:-1.83751854488;SP1:-1.85531156936;SOX{8,9,10}:-1.86358677859;GTF2A1,2:-1.89546681755;PATZ1:-1.97124007927;HOX{A6,A7,B6,B7}:-1.97817656938;SPZ1:-1.97947541536;FOX{I1,J2}:-1.97949497836;TFAP4:-1.98516942205;POU1F1:-2.03169988125;GCM1,2:-2.03468535834;ZBTB6:-2.0396766447;MYBL2:-2.06101008986;bHLH_family:-2.07471294875;TP53:-2.0751757957;MTF1:-2.1162861648;GFI1B:-2.11661652104;MAZ:-2.13722059818;NKX3-2:-2.19520866474;GTF2I:-2.20047241496;NFY{A,B,C}:-2.2243635344;CDC5L:-2.24637469549;PBX1:-2.29946174163;ELK1,4_GABP{A,B1}:-2.30872459164;ZEB1:-2.33635672984;RREB1:-2.34899481717;TLX1..3_NFIC{dimer}:-2.35462894382;XCPE1{core}:-2.38612022749;TFAP2{A,C}:-2.49203897869;AIRE:-2.49633613902;HIC1:-2.50853150624;SNAI1..3:-2.61781742874;ZNF148:-2.62491293785;ONECUT1,2:-2.62917397987;ZIC1..3:-2.68160427671;FOXQ1:-2.71304862816;MYOD1:-2.73046697175;NR5A1,2:-2.74041477129;ARID5B:-2.76619515515;SOX17:-2.83401988128;EBF1:-2.83692821129;UFEwm:-2.85677779454;KLF4:-3.07054807886;NRF1:-3.07670218874;GFI1:-3.17160912373;NKX2-2,8:-3.19817930859;LHX3,4:-3.31659398218;ZNF423:-3.34370518398;LMO2:-3.38114059114;HAND1,2:-3.40686748937;EVI1:-3.4423882862;AR:-3.4469220281;YY1:-3.82879229547;ZNF143:-3.87860233806;PAX5:-3.97609564329;LEF1_TCF7_TCF7L1,2:-3.98564280107;TOPORS:-4.04202531741
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11878-125C6;search_select_hide=table117:FF:11878-125C6
 }}

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FF:11878-125C6: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:25, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0