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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004822
|DRA_sample_Accession=CAGE@SAMD00004822
|accession_numbers=CAGE;DRX008134;DRR009006;DRZ000431;DRZ001816
|accession_numbers=CAGE;DRX008134;DRR009006;DRZ000431;DRZ001816;DRZ011781;DRZ013166
|ancestors_in_anatomy_facet=
|ancestors_in_anatomy_facet=
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
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|library_id=CNhs13491
|library_id=CNhs13491
|library_id_phase_based=2:CNhs13491
|library_id_phase_based=2:CNhs13491
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11883
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11883
|name=CD14+ monocytes - mock treated, donor3
|name=CD14+ monocytes - mock treated, donor3
|namespace=
|namespace=
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|profile_rnaseq=
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
|refex=http://refex.dbcls.jp/genelist.php?lang=en&db=human&roku_valid=1&rk[]=&order_key=score
|refex=http://refex.dbcls.jp/genelist.php?lang
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Line 97: Line 101:
|top_motifs=EP300:2.56746856377;SPI1:2.55040398014;SPIB:2.44693035913;NANOG{mouse}:2.40893285849;SREBF1,2:2.33948599128;ETS1,2:2.17303354683;CEBPA,B_DDIT3:1.98080844226;NFE2:1.93159414035;PAX2:1.91687590741;PPARG:1.84973182579;ELF1,2,4:1.78672125654;DMAP1_NCOR{1,2}_SMARC:1.77625634308;FOSL2:1.70282136794;NFIL3:1.70115662717;BACH2:1.63945728758;NFE2L2:1.56420457396;HLF:1.54010464103;FOXN1:1.52352640467;RUNX1..3:1.50187251665;FOS_FOS{B,L1}_JUN{B,D}:1.49660938565;FOXP3:1.41722628261;TLX2:1.33497181608;NR1H4:1.29669708275;HIF1A:1.27983336915;HMX1:1.27206568679;ATF5_CREB3:1.23927216399;NFKB1_REL_RELA:1.22222521626;IRF1,2:1.11846165131;TFCP2:1.09941854249;TGIF1:1.05351995016;FOXD3:1.02207681543;ATF4:1.01693698916;GLI1..3:1.01355224101;HES1:0.929835041179;IRF7:0.861450306369;SMAD1..7,9:0.857991429733;MAFB:0.851625906911;FOX{F1,F2,J1}:0.846661230877;SPZ1:0.786151820238;PDX1:0.718423831408;FOX{D1,D2}:0.700164347092;NFE2L1:0.678018836104;RXRA_VDR{dimer}:0.665600299557;CREB1:0.644343607349;RFX2..5_RFXANK_RFXAP:0.622756166788;HBP1_HMGB_SSRP1_UBTF:0.606004404627;ATF6:0.600623792989;HSF1,2:0.576450512032;ESR1:0.523373531422;GATA4:0.488925304721;NR6A1:0.398432616837;BPTF:0.340423253775;FOXO1,3,4:0.318316184712;ATF2:0.31774453197;JUN:0.317706165935;NANOG:0.314999510113;ZNF148:0.288776513938;STAT2,4,6:0.282358529917;ZBTB16:0.257973171202;ESRRA:0.250128475438;ALX4:0.240906049151;IKZF2:0.224272710928;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.221277058793;PITX1..3:0.138635905836;AHR_ARNT_ARNT2:0.124166826557;FOXP1:0.11492130221;NFIX:0.110777095867;EN1,2:0.0586303807515;CDX1,2,4:0.0498808289336;HMGA1,2:0.024794253783;VSX1,2:0.0179951972995;ALX1:-0.00328054345685;PRDM1:-0.007672030959;OCT4_SOX2{dimer}:-0.0136825918679;RBPJ:-0.0175892284898;MYB:-0.0543107819716;EGR1..3:-0.111456629036;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.145259612281;POU5F1:-0.179069508814;MYFfamily:-0.196916864653;RREB1:-0.203409418566;TFAP2{A,C}:-0.211513096494;PAX1,9:-0.21661023238;PATZ1:-0.222680080592;POU1F1:-0.250255906505;MZF1:-0.266940668099;HOX{A5,B5}:-0.27160744629;TFAP4:-0.311718282145;PAX3,7:-0.318373363364;XBP1:-0.333491329286;REST:-0.346194944939;TBP:-0.350007569211;EBF1:-0.35067184061;TEF:-0.372838916638;ZIC1..3:-0.375322124807;RXR{A,B,G}:-0.386512006189;STAT1,3:-0.387315930252;HNF4A_NR2F1,2:-0.397583709622;SRF:-0.46396335632;ZBTB6:-0.484666130969;TOPORS:-0.486058663189;GCM1,2:-0.497316522596;PRRX1,2:-0.525983081455;ZNF238:-0.555563253756;RFX1:-0.556919968463;NKX3-1:-0.562511980146;MEF2{A,B,C,D}:-0.565648443234;AR:-0.568064386797;GATA6:-0.573067801672;ELK1,4_GABP{A,B1}:-0.574610732248;SP1:-0.594099687562;MED-1{core}:-0.610962389716;POU2F1..3:-0.632655866357;NHLH1,2:-0.637276051519;TFAP2B:-0.64385494684;IKZF1:-0.655110887202;MYOD1:-0.656230594168;NKX2-2,8:-0.663013683737;HNF1A:-0.664242046157;NFATC1..3:-0.682055464918;ZNF423:-0.704406078489;TAL1_TCF{3,4,12}:-0.712749598945;NKX6-1,2:-0.722459693002;CUX2:-0.741043144536;SOX2:-0.74805777278;MTF1:-0.757212702529;DBP:-0.762045719892;GTF2A1,2:-0.788974792311;MTE{core}:-0.805298813448;TLX1..3_NFIC{dimer}:-0.815561183376;FOXA2:-0.816809218914;MAZ:-0.860878399382;ZFP161:-0.863190564784;PAX8:-0.87869219652;NKX2-3_NKX2-5:-0.903199917894;TBX4,5:-0.910981439738;STAT5{A,B}:-0.941351082176;LMO2:-0.963756816103;GTF2I:-1.01649406326;NKX3-2:-1.02172564962;PAX4:-1.02305371751;MYBL2:-1.02909775205;SOX5:-1.04748116508;PAX5:-1.0512901817;GZF1:-1.07912813644;HOX{A6,A7,B6,B7}:-1.0854067256;RORA:-1.09708630043;TFDP1:-1.09981005014;ZEB1:-1.11231752626;FOX{I1,J2}:-1.12168136692;XCPE1{core}:-1.12400160017;NR5A1,2:-1.14035999644;CRX:-1.14075399425;POU6F1:-1.14343501208;FOXQ1:-1.14815056791;PAX6:-1.15450695245;BREu{core}:-1.16813992129;TP53:-1.19731986501;KLF4:-1.20289695025;UFEwm:-1.2137102184;FOXM1:-1.22061794003;AIRE:-1.26084283542;HOX{A4,D4}:-1.2639813296;HIC1:-1.27023641576;FOXL1:-1.28010934374;EVI1:-1.28675693515;YY1:-1.34348670225;TEAD1:-1.37170780958;SNAI1..3:-1.37619697721;ARID5B:-1.38664180537;HOXA9_MEIS1:-1.42581857911;SOX{8,9,10}:-1.4315860476;E2F1..5:-1.49816162582;ONECUT1,2:-1.52280009256;ZNF384:-1.5413089705;T:-1.54316453614;HAND1,2:-1.57979911517;NR3C1:-1.68966041907;NRF1:-1.69692038579;bHLH_family:-1.73864310142;ZNF143:-1.88690893059;LHX3,4:-1.93364073162;GFI1B:-1.94593011659;NFY{A,B,C}:-1.9535681621;NKX2-1,4:-1.95820220058;ADNP_IRX_SIX_ZHX:-2.04891621721;SOX17:-2.06150609804;POU3F1..4:-2.22499917251;GFI1:-2.35185872138;PBX1:-2.36619054836;CDC5L:-2.58241859982;LEF1_TCF7_TCF7L1,2:-2.62068896336
|top_motifs=EP300:2.56746856377;SPI1:2.55040398014;SPIB:2.44693035913;NANOG{mouse}:2.40893285849;SREBF1,2:2.33948599128;ETS1,2:2.17303354683;CEBPA,B_DDIT3:1.98080844226;NFE2:1.93159414035;PAX2:1.91687590741;PPARG:1.84973182579;ELF1,2,4:1.78672125654;DMAP1_NCOR{1,2}_SMARC:1.77625634308;FOSL2:1.70282136794;NFIL3:1.70115662717;BACH2:1.63945728758;NFE2L2:1.56420457396;HLF:1.54010464103;FOXN1:1.52352640467;RUNX1..3:1.50187251665;FOS_FOS{B,L1}_JUN{B,D}:1.49660938565;FOXP3:1.41722628261;TLX2:1.33497181608;NR1H4:1.29669708275;HIF1A:1.27983336915;HMX1:1.27206568679;ATF5_CREB3:1.23927216399;NFKB1_REL_RELA:1.22222521626;IRF1,2:1.11846165131;TFCP2:1.09941854249;TGIF1:1.05351995016;FOXD3:1.02207681543;ATF4:1.01693698916;GLI1..3:1.01355224101;HES1:0.929835041179;IRF7:0.861450306369;SMAD1..7,9:0.857991429733;MAFB:0.851625906911;FOX{F1,F2,J1}:0.846661230877;SPZ1:0.786151820238;PDX1:0.718423831408;FOX{D1,D2}:0.700164347092;NFE2L1:0.678018836104;RXRA_VDR{dimer}:0.665600299557;CREB1:0.644343607349;RFX2..5_RFXANK_RFXAP:0.622756166788;HBP1_HMGB_SSRP1_UBTF:0.606004404627;ATF6:0.600623792989;HSF1,2:0.576450512032;ESR1:0.523373531422;GATA4:0.488925304721;NR6A1:0.398432616837;BPTF:0.340423253775;FOXO1,3,4:0.318316184712;ATF2:0.31774453197;JUN:0.317706165935;NANOG:0.314999510113;ZNF148:0.288776513938;STAT2,4,6:0.282358529917;ZBTB16:0.257973171202;ESRRA:0.250128475438;ALX4:0.240906049151;IKZF2:0.224272710928;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:0.221277058793;PITX1..3:0.138635905836;AHR_ARNT_ARNT2:0.124166826557;FOXP1:0.11492130221;NFIX:0.110777095867;EN1,2:0.0586303807515;CDX1,2,4:0.0498808289336;HMGA1,2:0.024794253783;VSX1,2:0.0179951972995;ALX1:-0.00328054345685;PRDM1:-0.007672030959;OCT4_SOX2{dimer}:-0.0136825918679;RBPJ:-0.0175892284898;MYB:-0.0543107819716;EGR1..3:-0.111456629036;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.145259612281;POU5F1:-0.179069508814;MYFfamily:-0.196916864653;RREB1:-0.203409418566;TFAP2{A,C}:-0.211513096494;PAX1,9:-0.21661023238;PATZ1:-0.222680080592;POU1F1:-0.250255906505;MZF1:-0.266940668099;HOX{A5,B5}:-0.27160744629;TFAP4:-0.311718282145;PAX3,7:-0.318373363364;XBP1:-0.333491329286;REST:-0.346194944939;TBP:-0.350007569211;EBF1:-0.35067184061;TEF:-0.372838916638;ZIC1..3:-0.375322124807;RXR{A,B,G}:-0.386512006189;STAT1,3:-0.387315930252;HNF4A_NR2F1,2:-0.397583709622;SRF:-0.46396335632;ZBTB6:-0.484666130969;TOPORS:-0.486058663189;GCM1,2:-0.497316522596;PRRX1,2:-0.525983081455;ZNF238:-0.555563253756;RFX1:-0.556919968463;NKX3-1:-0.562511980146;MEF2{A,B,C,D}:-0.565648443234;AR:-0.568064386797;GATA6:-0.573067801672;ELK1,4_GABP{A,B1}:-0.574610732248;SP1:-0.594099687562;MED-1{core}:-0.610962389716;POU2F1..3:-0.632655866357;NHLH1,2:-0.637276051519;TFAP2B:-0.64385494684;IKZF1:-0.655110887202;MYOD1:-0.656230594168;NKX2-2,8:-0.663013683737;HNF1A:-0.664242046157;NFATC1..3:-0.682055464918;ZNF423:-0.704406078489;TAL1_TCF{3,4,12}:-0.712749598945;NKX6-1,2:-0.722459693002;CUX2:-0.741043144536;SOX2:-0.74805777278;MTF1:-0.757212702529;DBP:-0.762045719892;GTF2A1,2:-0.788974792311;MTE{core}:-0.805298813448;TLX1..3_NFIC{dimer}:-0.815561183376;FOXA2:-0.816809218914;MAZ:-0.860878399382;ZFP161:-0.863190564784;PAX8:-0.87869219652;NKX2-3_NKX2-5:-0.903199917894;TBX4,5:-0.910981439738;STAT5{A,B}:-0.941351082176;LMO2:-0.963756816103;GTF2I:-1.01649406326;NKX3-2:-1.02172564962;PAX4:-1.02305371751;MYBL2:-1.02909775205;SOX5:-1.04748116508;PAX5:-1.0512901817;GZF1:-1.07912813644;HOX{A6,A7,B6,B7}:-1.0854067256;RORA:-1.09708630043;TFDP1:-1.09981005014;ZEB1:-1.11231752626;FOX{I1,J2}:-1.12168136692;XCPE1{core}:-1.12400160017;NR5A1,2:-1.14035999644;CRX:-1.14075399425;POU6F1:-1.14343501208;FOXQ1:-1.14815056791;PAX6:-1.15450695245;BREu{core}:-1.16813992129;TP53:-1.19731986501;KLF4:-1.20289695025;UFEwm:-1.2137102184;FOXM1:-1.22061794003;AIRE:-1.26084283542;HOX{A4,D4}:-1.2639813296;HIC1:-1.27023641576;FOXL1:-1.28010934374;EVI1:-1.28675693515;YY1:-1.34348670225;TEAD1:-1.37170780958;SNAI1..3:-1.37619697721;ARID5B:-1.38664180537;HOXA9_MEIS1:-1.42581857911;SOX{8,9,10}:-1.4315860476;E2F1..5:-1.49816162582;ONECUT1,2:-1.52280009256;ZNF384:-1.5413089705;T:-1.54316453614;HAND1,2:-1.57979911517;NR3C1:-1.68966041907;NRF1:-1.69692038579;bHLH_family:-1.73864310142;ZNF143:-1.88690893059;LHX3,4:-1.93364073162;GFI1B:-1.94593011659;NFY{A,B,C}:-1.9535681621;NKX2-1,4:-1.95820220058;ADNP_IRX_SIX_ZHX:-2.04891621721;SOX17:-2.06150609804;POU3F1..4:-2.22499917251;GFI1:-2.35185872138;PBX1:-2.36619054836;CDC5L:-2.58241859982;LEF1_TCF7_TCF7L1,2:-2.62068896336
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11883-125D2;search_select_hide=table117:FF:11883-125D2
}}
}}

Latest revision as of 18:26, 4 June 2020

Name:CD14+ monocytes - mock treated, donor3
Species:Human (Homo sapiens)
Library ID:CNhs13491
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissueNA
dev stageNA
sexfemale
age21
cell typemonocyte
cell lineNA
companyNA
collaborationChristine Wells (University of Queensland)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberD5-4
catalog numberNA
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004822
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs13491 CAGE DRX008134 DRR009006
Accession ID Hg19

Library idBAMCTSS
CNhs13491 DRZ000431 DRZ001816
Accession ID Hg38

Library idBAMCTSS
CNhs13491 DRZ011781 DRZ013166
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
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Hg38
BAMCTSS
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Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0.0943
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis-0.122
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0.293
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.471
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190.0943
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40.172
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.678
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0.0943
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.202
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0.172
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.393
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.396
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.0997
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0.666
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40.124
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0.237
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.18
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0.0943
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.074
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0.237
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.989
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0.172
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.915
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.592
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.308
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0.815
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.324
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.0943
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.426
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0.345
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0.643
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.237
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.684
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.494
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340.172
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.93
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0.295
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0.0943
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0.72
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0.0408
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0.0943
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0.473
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0.0943
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0.785
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0.0943
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.169
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0.0943
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340.172
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0.39
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13491

Jaspar motifP-value
MA0002.21.82801e-8
MA0003.10.293
MA0004.10.361
MA0006.10.741
MA0007.10.876
MA0009.10.406
MA0014.10.857
MA0017.10.0316
MA0018.20.315
MA0019.10.613
MA0024.14.76957e-4
MA0025.16.52506e-4
MA0027.10.775
MA0028.10.529
MA0029.10.59
MA0030.10.707
MA0031.10.495
MA0035.20.574
MA0038.10.02
MA0039.20.669
MA0040.10.155
MA0041.10.938
MA0042.10.441
MA0043.16.60022e-4
MA0046.10.0488
MA0047.20.258
MA0048.10.999
MA0050.12.66436e-6
MA0051.10.0189
MA0052.10.347
MA0055.10.476
MA0057.10.705
MA0058.10.171
MA0059.10.548
MA0060.11.59911e-10
MA0061.15.23069e-5
MA0062.20.00953
MA0065.20.0379
MA0066.10.154
MA0067.17.43953e-4
MA0068.10.879
MA0069.10.928
MA0070.10.0477
MA0071.10.253
MA0072.10.908
MA0073.10.251
MA0074.10.212
MA0076.10.669
MA0077.10.118
MA0078.10.435
MA0079.20.959
MA0080.21.02327e-16
MA0081.11.59772e-4
MA0083.10.99
MA0084.10.808
MA0087.10.474
MA0088.10.666
MA0090.10.0644
MA0091.10.573
MA0092.10.242
MA0093.10.364
MA0099.26.54659e-38
MA0100.10.648
MA0101.18.13684e-4
MA0102.22.61523e-9
MA0103.10.463
MA0104.20.957
MA0105.11.58618e-6
MA0106.10.505
MA0107.16.94001e-5
MA0108.20.0186
MA0111.10.346
MA0112.21.08717e-4
MA0113.10.914
MA0114.10.237
MA0115.10.815
MA0116.14.02943e-4
MA0117.10.284
MA0119.10.467
MA0122.10.734
MA0124.10.572
MA0125.10.307
MA0131.10.425
MA0135.10.243
MA0136.19.71207e-20
MA0137.20.492
MA0138.20.669
MA0139.10.635
MA0140.10.444
MA0141.10.0713
MA0142.10.877
MA0143.10.503
MA0144.10.158
MA0145.10.193
MA0146.10.028
MA0147.10.925
MA0148.10.931
MA0149.10.266
MA0150.11.43776e-12
MA0152.10.379
MA0153.10.0093
MA0154.10.00169
MA0155.10.67
MA0156.18.48451e-14
MA0157.10.257
MA0159.10.0301
MA0160.10.0212
MA0162.10.949
MA0163.14.2026e-5
MA0164.10.701
MA0258.10.00233
MA0259.10.436



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs13491

Novel motifP-value
10.156
100.0223
1000.668
1010.67
1020.396
1030.301
1040.541
1050.28
1066.99327e-4
1070.243
1080.992
1090.187
110.216
1100.369
1110.049
1120.27
1130.475
1140.0191
1150.214
1160.875
1170.0306
1180.216
1190.173
120.337
1200.675
1210.532
1220.675
1230.0411
1240.673
1250.816
1260.159
1270.228
1280.0162
1290.496
130.187
1300.26
1310.344
1320.0696
1330.79
1340.62
1350.253
1360.972
1370.00421
1380.165
1390.0475
140.414
1400.19
1410.333
1420.729
1430.0328
1440.86
1450.571
1460.441
1470.209
1480.0262
1490.742
150.157
1500.482
1510.273
1520.0799
1530.358
1540.611
1550.458
1560.826
1570.419
1580.106
1590.829
160.42
1600.607
1610.624
1620.244
1630.605
1640.129
1650.117
1660.359
1670.293
1680.396
1690.0106
170.205
180.25
190.267
20.896
200.441
210.349
220.154
230.0563
240.189
250.299
260.0526
270.715
280.44
290.397
30.0727
300.654
310.685
320.623
330.542
340.325
350.197
360.209
370.0565
380.311
390.811
40.618
400.18
410.0136
420.381
430.0437
440.914
450.661
460.172
470.537
480.466
490.109
50.216
500.955
510.342
520.29
530.225
540.321
550.398
560.628
570.933
580.104
590.108
60.596
600.0388
610.465
620.0357
630.493
640.525
650.211
660.348
670.461
680.878
690.838
70.227
700.0163
710.0346
720.241
730.0747
740.161
750.0558
760.28
770.413
780.0957
790.195
80.471
800.12
810.417
820.135
830.336
840.493
850.0127
860.0292
870.3
880.416
890.413
90.31
900.0705
910.343
920.188
930.161
940.036
950.376
960.433
970.926
980.167
990.114



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs13491


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000343 (control treatment sample)
0000350 (experimentally modified sample)
0011101 (human CD14-positive monocytes - mock treated sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

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