FF:11889-125D8: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@ | |DRA_sample_Accession=CAGE@SAMD00005156 | ||
|accession_numbers=CAGE;DRX008137;DRR009009;DRZ000434;DRZ001819 | |accession_numbers=CAGE;DRX008137;DRR009009;DRZ000434;DRZ001819;DRZ011784;DRZ013169 | ||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.35!2226.17!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.73!539.20!SPI1;;chr21:34442439..34442455,+!p1@OLIG1!2.56!360.50!OLIG1;;chr10:64576105..64576133,-!p1@EGR2!2.51!640.47!EGR2;;chr7:115670804..115670825,-!p1@TFEC!2.49!307.85!TFEC;;chr16:85932760..85932775,+!p1@IRF8!2.41!254.58!IRF8;;chr12:54778471..54778528,-!p1@ZNF385A!2.32!205.65!ZNF385A;;chr11:47399947..47399961,-!p3@SPI1!2.12!131.93!SPI1;;chr20:39317868..39317884,-!p1@MAFB!2.06!1271.34!MAFB;;chr6:106534192..106534224,+!p1@PRDM1!2.06!309.71!PRDM1;;chr21:34398234..34398250,+!p1@OLIG2!2.06!112.73!OLIG2;;chr11:47400062..47400077,-!p2@SPI1!2.06!112.73!SPI1;;chr3:12330560..12330579,+!p1@PPARG!1.97!104.68!PPARG;;chr19:45971246..45971265,+!p1@FOSB!1.95!1536.14!FOSB;;chr10:64018918..64018936,+!p2@ZNF365!1.94!85.48!ZNF365;;chr2:157189180..157189290,-!p1@NR4A2!1.93!419.96!NR4A2;;chr11:47399996..47400014,-!p4@SPI1!1.90!78.67!SPI1;;chr9:102584159..102584174,+!p2@NR4A3!1.84!120.79!NR4A3;;chr10:31288398..31288455,-!p2@ZNF438!1.84!78.67!ZNF438;;chr12:52445218..52445237,+!p1@NR4A1!1.83!786.03!NR4A1;;chr10:35484053..35484076,+!p1@CREM!1.83!161.05!CREM;;chr3:12329397..12329433,+!p2@PPARG!1.82!143.70!PPARG;;chr8:22550982..22550999,-!p1@EGR3!1.81!174.05!EGR3;;chr6:106534230..106534254,+!p2@PRDM1!1.79!147.11!PRDM1;;chr11:47400032..47400043,-!p5@SPI1!1.79!61.01!SPI1;;chr2:145277640..145277771,-!p1@ZEB2!1.75!695.29!ZEB2;;chr2:70142232..70142251,+!p1@MXD1!1.74!288.03!MXD1;;chr14:35872453..35872485,-!p2@NFKBIA!1.74!127.60!NFKBIA;;chr12:72056800..72056834,+!p1@THAP2!1.74!72.16!THAP2;;chr16:31885093..31885165,+!p1@ZNF267!1.73!762.19!ZNF267;;chr1:25256756..25256774,-!p1@RUNX3!1.72!94.77!RUNX3;;chr1:212782094..212782109,+!p1@ATF3!1.71!1287.45!ATF3;;chr19:36391434..36391450,-!p1@NFKBID!1.71!96.32!NFKBID;;chr10:31288370..31288393,-!p3@ZNF438!1.71!49.86!ZNF438;;chr2:68592394..68592405,+!p2@PLEK!1.66!44.60!PLEK;;chr10:51572408..51572454,+!p3@NCOA4!1.65!245.60!NCOA4;;chr19:50432132..50432217,+!p2@ATF5!1.65!51.41!ATF5;;chr2:61108695..61108753,+!p1@REL!1.63!274.09!REL;;chr20:48599506..48599526,+!p1@SNAI1!1.63!257.37!SNAI1;;chr2:145275162..145275202,-!p2@ZEB2!1.61!222.37!ZEB2;;chr14:35873947..35873965,-!p1@NFKBIA!1.57!2168.87!NFKBIA;;chr22:38597987..38598021,+!p2@MAFF!1.57!213.39!MAFF;;chr21:30671690..30671762,+!p2@BACH1!1.57!117.69!BACH1;;chr11:47400045..47400060,-!p6@SPI1!1.56!35.31!SPI1;;chr4:103422499..103422632,+!p1@NFKB1!1.55!688.48!NFKB1;;chr9:102584262..102584276,+!p1@NR4A3!1.55!75.57!NR4A3;;chr6:144385698..144385742,-!p2@PLAGL1!1.55!41.50!PLAGL1;;chr10:104155480..104155534,+!p2@NFKB2!1.54!208.74!NFKB2;;chr12:72056773..72056796,+!p3@THAP2!1.54!43.67!THAP2;;chr19:54041669..54041697,+!p2@ZNF331!1.54!33.45!ZNF331;;chr6:15246200..15246214,+!p2@JARID2!1.52!85.48!JARID2;;chr7:50344289..50344323,+!p1@IKZF1!1.51!31.59!IKZF1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.51!31.28!ZBED1;;chr12:72056749..72056767,+!p6@THAP2!1.50!33.76!THAP2;;chrX:153305787..153305807,-!p3@MECP2!1.50!30.97!MECP2;;chr21:30671235..30671253,+!p1@BACH1!1.49!365.76!BACH1;;chr12:54778351..54778378,-!p6@ZNF385A!1.49!30.04!ZNF385A;;chr21:34442540..34442560,+!p2@OLIG1!1.49!29.73!OLIG1;;chr4:106068026..106068084,+!p1@TET2!1.48!249.31!TET2;;chr9:102584128..102584144,+!p3@NR4A3!1.48!55.13!NR4A3;;chr11:47399920..47399931,-!p7@SPI1!1.47!28.49!SPI1;;chr20:48807351..48807384,+!p1@CEBPB!1.46!2692.59!CEBPB;;chr6:44233252..44233296,-!p1@NFKBIE!1.45!255.51!NFKBIE;;chr2:97202480..97202499,+!p1@ARID5A!1.44!258.91!ARID5A;;chr21:36260295..36260310,-!p3@RUNX1!1.44!42.43!RUNX1;;chr10:104154246..104154347,+!p3@NFKB2!1.41!146.49!NFKB2;;chr13:41593425..41593480,-!p1@ELF1!1.40!146.80!ELF1;;chr18:77155922..77155939,+!p1@NFATC1!1.40!64.42!NFATC1;;chr10:51572339..51572376,+!p4@NCOA4!1.40!53.89!NCOA4;;chr10:104155659..104155676,+!p4@NFKB2!1.40!29.73!NFKB2;;chr12:48298765..48298783,-!p2@VDR!1.39!48.00!VDR;;chr17:38497662..38497713,+!p4@RARA!1.39!26.94!RARA;;chr1:37940170..37940190,+!p1@ZC3H12A!1.37!266.66!ZC3H12A;;chr14:35872962..35873025,-!p3@NFKBIA!1.37!55.75!NFKBIA;;chr2:70314240..70314256,+!p4@PCBP1!1.37!46.15!PCBP1;;chr9:110252035..110252057,-!p1@KLF4!1.35!329.22!KLF4;;chr9:129567282..129567353,+!p1@ZBTB43!1.35!269.44!ZBTB43;;chrX:129244454..129244488,-!p1@ELF4!1.34!147.73!ELF4;;chr6:12012170..12012245,+!p1@HIVEP1!1.34!101.58!HIVEP1;;chr19:19496539..19496576,+!p8@GATAD2A!1.34!35.93!GATAD2A;;chr2:145277882..145277967,-!p3@ZEB2!1.34!35.62!ZEB2;;chr2:192015701..192015743,-!p1@STAT4!1.34!28.18!STAT4;;chr19:54058073..54058088,+!p1@ZNF331!1.34!21.06!ZNF331;;chr8:53373491..53373506,-!p4@ST18!1.34!20.75!ST18;;chr18:3449618..3449634,+!p13@TGIF1!1.33!25.09!TGIF1;;chr3:150126101..150126118,+!p6@TSC22D2!1.32!32.52!TSC22D2;;chr8:80679993..80680011,-!p1@HEY1!1.31!28.18!HEY1;;chr2:61108808..61108821,+!p3@REL!1.31!24.16!REL;;chr2:238600998..238601013,+!p5@LRRFIP1!1.31!19.20!LRRFIP1;;chr6:12012249..12012266,+!p5@HIVEP1!1.30!32.52!HIVEP1;;chr6:106535598..106535637,+!p7@PRDM1!1.30!18.89!PRDM1;;chr2:113999360..113999386,-!p4@PAX8!1.30!18.89!PAX8;;chr21:36421535..36421610,-!p2@RUNX1!1.29!64.11!RUNX1;;chr3:39195037..39195069,-!p2@CSRNP1!1.28!108.71!CSRNP1;;chr13:41635029..41635044,-!p4@ELF1!1.27!37.47!ELF1;;chr1:38325227..38325246,-!p2@MTF1!1.27!24.16!MTF1;;chr2:28615716..28615733,+!p1@FOSL2!1.26!795.64!FOSL2;;chr18:3449720..3449749,+!p2@TGIF1!1.26!35.93!TGIF1;;chr2:231090471..231090504,+!p2@SP140!1.26!17.34!SP140;;chr4:103423079..103423112,+!p4@NFKB1!1.26!17.03!NFKB1;;chr7:17338266..17338282,+!p1@AHR!1.25!177.46!AHR;;chr1:157108130..157108173,-!p1@ETV3!1.25!119.24!ETV3;;chr6:12011943..12012015,+!p2@HIVEP1!1.25!53.27!HIVEP1;;chr8:123793988..123794016,+!p1@ZHX2!1.25!29.42!ZHX2;;chr12:11802753..11802834,+!p2@ETV6!1.24!78.36!ETV6;;chr18:3448455..3448480,+!p5@TGIF1!1.24!30.04!TGIF1;;chr21:30672433..30672464,+!p6@BACH1!1.24!16.41!BACH1;;chr3:69788576..69788648,+!p1@MITF!1.23!83.93!MITF;;chr4:83822199..83822239,+!p2@THAP9!1.23!18.89!THAP9;;chr6:391743..391759,+!p1@IRF4!1.23!16.10!IRF4;;chr19:45251395..45251432,+!p8@BCL3!1.23!15.80!BCL3;;chr2:238600933..238600985,+!p3@LRRFIP1!1.22!84.24!LRRFIP1;;chr20:48807456..48807475,+!p3@CEBPB!1.22!29.73!CEBPB;;chr19:33793430..33793447,-!p1@CEBPA!1.21!63.49!CEBPA;;chr1:161736038..161736056,+!p4@ATF6!1.21!35.31!ATF6;;chr10:35484090..35484104,+!p6@CREM!1.21!15.18!CREM;;chr12:57914700..57914737,+!p7@MBD6!1.20!14.87!MBD6;;chrX:129244430..129244442,-!p5@ELF4!1.20!14.87!ELF4;;chr3:170075436..170075520,+!p1@SKIL!1.18!298.87!SKIL;;chr10:3827371..3827386,-!p2@KLF6!1.18!117.38!KLF6;;chr3:126191157..126191171,-!p4@ZXDC!1.18!14.25!ZXDC;;chr19:36389839..36389857,-!p4@NFKBID!1.18!14.25!NFKBID;;chr14:75745523..75745537,+!p1@FOS!1.17!1619.45!FOS;;chr19:45252008..45252024,+!p2@BCL3!1.17!45.53!BCL3;;chr2:28618532..28618610,+!p4@FOSL2!1.17!23.85!FOSL2;;chr18:3449586..3449617,+!p8@TGIF1!1.17!22.30!TGIF1;;chr10:31288329..31288353,-!p7@ZNF438!1.17!13.94!ZNF438;;chr13:41593392..41593403,-!p7@ELF1!1.17!13.63!ELF1;;chr1:212738742..212738755,+!p2@ATF3!1.17!13.63!ATF3;;chr20:48807171..48807234,+!p4@CEBPB!1.16!29.42!CEBPB;;chr1:25256439..25256476,-!p3@RUNX3!1.16!13.32!RUNX3;;chr12:48298785..48298828,-!p1@VDR!1.15!69.06!VDR;;chr2:61108771..61108789,+!p4@REL!1.15!19.82!REL;;chr8:81397820..81397836,+!p2@ZBTB10!1.15!16.41!ZBTB10;;chr11:65430554..65430579,-!p3@RELA!1.14!32.52!RELA;;chr5:142782823..142782854,-!p3@NR3C1!1.14!18.27!NR3C1;;chr21:40177845..40177863,+!p1@ETS2!1.13!735.55!ETS2;;chr3:101568349..101568365,+!p1@NFKBIZ!1.13!649.14!NFKBIZ;;chr10:104155455..104155479,+!p1@NFKB2!1.13!183.66!NFKB2;;chr7:17338324..17338341,+!p3@AHR!1.13!42.12!AHR;;chr3:12329358..12329393,+!p3@PPARG!1.13!30.66!PPARG;;chr7:128577972..128578047,+!p1@IRF5!1.13!19.82!IRF5;;chr1:156470515..156470542,-!p2@MEF2D!1.12!63.80!MEF2D;;chr10:35416142..35416169,+!p3@CREM!1.12!32.52!CREM;;chrX:153305962..153305995,-!p5@MECP2!1.12!12.08!MECP2;;chr11:615942..615957,-!p1@IRF7!1.11!111.49!IRF7;;chr1:935467..935484,-!p1@HES4!1.11!52.34!HES4;;chr10:35484804..35484902,+!p2@CREM!1.11!45.22!CREM;;chr9:110250697..110250738,-!p2@KLF4!1.11!13.94!KLF4;;chr5:88178983..88179012,-!p1@MEF2C!1.10!90.12!MEF2C;;chr19:47616992..47617011,-!p4@ZC3H4!1.10!24.78!ZC3H4;;chr8:72756063..72756125,-!p1@MSC!1.10!23.85!MSC;;chr14:64971014..64971044,+!p4@ZBTB1!1.10!19.20!ZBTB1;;chr9:102584241..102584261,+!p4@NR4A3!1.10!17.96!NR4A3;;chr20:48807648..48807671,+!p9@CEBPB!1.10!16.72!CEBPB;;chr8:81397846..81397860,+!p3@ZBTB10!1.10!14.56!ZBTB10;;chr7:115670792..115670797,-!p2@TFEC!1.10!11.46!TFEC;;chr12:96588219..96588263,+!p2@ELK3!1.09!81.76!ELK3;;chr12:96588279..96588299,+!p4@ELK3!1.08!52.65!ELK3;;chr3:5020939..5020952,+!p2@BHLHE40!1.08!35.00!BHLHE40;;chr6:20403916..20403965,+!p3@E2F3!1.07!48.62!E2F3;;chr20:48807615..48807644,+!p6@CEBPB!1.07!17.96!CEBPB;;chr20:48809000..48809053,+!p12@CEBPB!1.07!14.25!CEBPB;;chr6:15246261..15246312,+!p1@JARID2!1.06!254.89!JARID2;;chr9:88969303..88969335,-!p1@ZCCHC6!1.06!99.11!ZCCHC6;;chr2:208394817..208394834,+!p3@CREB1!1.06!42.43!CREB1;;chr14:35872926..35872951,-!p4@NFKBIA!1.06!14.87!NFKBIA;;chr1:221052733..221052749,+!p2@HLX!1.06!13.63!HLX;;chr2:145275228..145275241,-!p11@ZEB2!1.06!12.70!ZEB2;;chr4:106066776..106066791,+!p9@TET2!1.06!10.53!TET2;;chr19:50432104..50432126,+!p6@ATF5!1.06!10.53!ATF5;;chr21:36260980..36261011,-!p1@RUNX1!1.04!292.67!RUNX1;;chr21:40177892..40177903,+!p2@ETS2!1.04!40.26!ETS2;;chr2:231280954..231280965,+!p2@SP100!1.04!18.58!SP100;;chr1:221052776..221052799,+!p1@HLX!1.04!18.27!HLX;;chr18:3449330..3449344,+!p10@TGIF1!1.04!13.32!TGIF1;;chr3:39195139..39195150,-!p3@CSRNP1!1.04!12.70!CSRNP1;;chr2:102091566..102091581,-!p1@RFX8!1.04!9.91!RFX8;;chr17:38497715..38497734,+!p8@RARA!1.04!9.91!RARA;;chr19:36389729..36389751,-!p3@NFKBID!1.04!9.91!NFKBID;;chr17:38474489..38474548,+!p1@RARA!1.03!312.80!RARA;;chr9:88969339..88969422,-!p2@ZCCHC6!1.03!75.88!ZCCHC6;;chr12:52431016..52431071,+!p4@NR4A1!1.03!11.46!NR4A1;;chr19:42627037..42627084,-!p3@POU2F2!1.03!9.60!POU2F2;;chr18:3449695..3449712,+!p9@TGIF1!1.02!14.87!TGIF1;;chr12: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| |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.35!2226.17!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.73!539.20!SPI1;;chr21:34442439..34442455,+!p1@OLIG1!2.56!360.50!OLIG1;;chr10:64576105..64576133,-!p1@EGR2!2.51!640.47!EGR2;;chr7:115670804..115670825,-!p1@TFEC!2.49!307.85!TFEC;;chr16:85932760..85932775,+!p1@IRF8!2.41!254.58!IRF8;;chr12:54778471..54778528,-!p1@ZNF385A!2.32!205.65!ZNF385A;;chr11:47399947..47399961,-!p3@SPI1!2.12!131.93!SPI1;;chr20:39317868..39317884,-!p1@MAFB!2.06!1271.34!MAFB;;chr6:106534192..106534224,+!p1@PRDM1!2.06!309.71!PRDM1;;chr21:34398234..34398250,+!p1@OLIG2!2.06!112.73!OLIG2;;chr11:47400062..47400077,-!p2@SPI1!2.06!112.73!SPI1;;chr3:12330560..12330579,+!p1@PPARG!1.97!104.68!PPARG;;chr19:45971246..45971265,+!p1@FOSB!1.95!1536.14!FOSB;;chr10:64018918..64018936,+!p2@ZNF365!1.94!85.48!ZNF365;;chr2:157189180..157189290,-!p1@NR4A2!1.93!419.96!NR4A2;;chr11:47399996..47400014,-!p4@SPI1!1.90!78.67!SPI1;;chr9:102584159..102584174,+!p2@NR4A3!1.84!120.79!NR4A3;;chr10:31288398..31288455,-!p2@ZNF438!1.84!78.67!ZNF438;;chr12:52445218..52445237,+!p1@NR4A1!1.83!786.03!NR4A1;;chr10:35484053..35484076,+!p1@CREM!1.83!161.05!CREM;;chr3:12329397..12329433,+!p2@PPARG!1.82!143.70!PPARG;;chr8:22550982..22550999,-!p1@EGR3!1.81!174.05!EGR3;;chr6:106534230..106534254,+!p2@PRDM1!1.79!147.11!PRDM1;;chr11:47400032..47400043,-!p5@SPI1!1.79!61.01!SPI1;;chr2:145277640..145277771,-!p1@ZEB2!1.75!695.29!ZEB2;;chr2:70142232..70142251,+!p1@MXD1!1.74!288.03!MXD1;;chr14:35872453..35872485,-!p2@NFKBIA!1.74!127.60!NFKBIA;;chr12:72056800..72056834,+!p1@THAP2!1.74!72.16!THAP2;;chr16:31885093..31885165,+!p1@ZNF267!1.73!762.19!ZNF267;;chr1:25256756..25256774,-!p1@RUNX3!1.72!94.77!RUNX3;;chr1:212782094..212782109,+!p1@ATF3!1.71!1287.45!ATF3;;chr19:36391434..36391450,-!p1@NFKBID!1.71!96.32!NFKBID;;chr10:31288370..31288393,-!p3@ZNF438!1.71!49.86!ZNF438;;chr2:68592394..68592405,+!p2@PLEK!1.66!44.60!PLEK;;chr10:51572408..51572454,+!p3@NCOA4!1.65!245.60!NCOA4;;chr19:50432132..50432217,+!p2@ATF5!1.65!51.41!ATF5;;chr2:61108695..61108753,+!p1@REL!1.63!274.09!REL;;chr20:48599506..48599526,+!p1@SNAI1!1.63!257.37!SNAI1;;chr2:145275162..145275202,-!p2@ZEB2!1.61!222.37!ZEB2;;chr14:35873947..35873965,-!p1@NFKBIA!1.57!2168.87!NFKBIA;;chr22:38597987..38598021,+!p2@MAFF!1.57!213.39!MAFF;;chr21:30671690..30671762,+!p2@BACH1!1.57!117.69!BACH1;;chr11:47400045..47400060,-!p6@SPI1!1.56!35.31!SPI1;;chr4:103422499..103422632,+!p1@NFKB1!1.55!688.48!NFKB1;;chr9:102584262..102584276,+!p1@NR4A3!1.55!75.57!NR4A3;;chr6:144385698..144385742,-!p2@PLAGL1!1.55!41.50!PLAGL1;;chr10:104155480..104155534,+!p2@NFKB2!1.54!208.74!NFKB2;;chr12:72056773..72056796,+!p3@THAP2!1.54!43.67!THAP2;;chr19:54041669..54041697,+!p2@ZNF331!1.54!33.45!ZNF331;;chr6:15246200..15246214,+!p2@JARID2!1.52!85.48!JARID2;;chr7:50344289..50344323,+!p1@IKZF1!1.51!31.59!IKZF1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.51!31.28!ZBED1;;chr12:72056749..72056767,+!p6@THAP2!1.50!33.76!THAP2;;chrX:153305787..153305807,-!p3@MECP2!1.50!30.97!MECP2;;chr21:30671235..30671253,+!p1@BACH1!1.49!365.76!BACH1;;chr12:54778351..54778378,-!p6@ZNF385A!1.49!30.04!ZNF385A;;chr21:34442540..34442560,+!p2@OLIG1!1.49!29.73!OLIG1;;chr4:106068026..106068084,+!p1@TET2!1.48!249.31!TET2;;chr9:102584128..102584144,+!p3@NR4A3!1.48!55.13!NR4A3;;chr11:47399920..47399931,-!p7@SPI1!1.47!28.49!SPI1;;chr20:48807351..48807384,+!p1@CEBPB!1.46!2692.59!CEBPB;;chr6:44233252..44233296,-!p1@NFKBIE!1.45!255.51!NFKBIE;;chr2:97202480..97202499,+!p1@ARID5A!1.44!258.91!ARID5A;;chr21:36260295..36260310,-!p3@RUNX1!1.44!42.43!RUNX1;;chr10:104154246..104154347,+!p3@NFKB2!1.41!146.49!NFKB2;;chr13:41593425..41593480,-!p1@ELF1!1.40!146.80!ELF1;;chr18:77155922..77155939,+!p1@NFATC1!1.40!64.42!NFATC1;;chr10:51572339..51572376,+!p4@NCOA4!1.40!53.89!NCOA4;;chr10:104155659..104155676,+!p4@NFKB2!1.40!29.73!NFKB2;;chr12:48298765..48298783,-!p2@VDR!1.39!48.00!VDR;;chr17:38497662..38497713,+!p4@RARA!1.39!26.94!RARA;;chr1:37940170..37940190,+!p1@ZC3H12A!1.37!266.66!ZC3H12A;;chr14:35872962..35873025,-!p3@NFKBIA!1.37!55.75!NFKBIA;;chr2:70314240..70314256,+!p4@PCBP1!1.37!46.15!PCBP1;;chr9:110252035..110252057,-!p1@KLF4!1.35!329.22!KLF4;;chr9:129567282..129567353,+!p1@ZBTB43!1.35!269.44!ZBTB43;;chrX:129244454..129244488,-!p1@ELF4!1.34!147.73!ELF4;;chr6:12012170..12012245,+!p1@HIVEP1!1.34!101.58!HIVEP1;;chr19:19496539..19496576,+!p8@GATAD2A!1.34!35.93!GATAD2A;;chr2:145277882..145277967,-!p3@ZEB2!1.34!35.62!ZEB2;;chr2:192015701..192015743,-!p1@STAT4!1.34!28.18!STAT4;;chr19:54058073..54058088,+!p1@ZNF331!1.34!21.06!ZNF331;;chr8:53373491..53373506,-!p4@ST18!1.34!20.75!ST18;;chr18:3449618..3449634,+!p13@TGIF1!1.33!25.09!TGIF1;;chr3:150126101..150126118,+!p6@TSC22D2!1.32!32.52!TSC22D2;;chr8:80679993..80680011,-!p1@HEY1!1.31!28.18!HEY1;;chr2:61108808..61108821,+!p3@REL!1.31!24.16!REL;;chr2:238600998..238601013,+!p5@LRRFIP1!1.31!19.20!LRRFIP1;;chr6:12012249..12012266,+!p5@HIVEP1!1.30!32.52!HIVEP1;;chr6:106535598..106535637,+!p7@PRDM1!1.30!18.89!PRDM1;;chr2:113999360..113999386,-!p4@PAX8!1.30!18.89!PAX8;;chr21:36421535..36421610,-!p2@RUNX1!1.29!64.11!RUNX1;;chr3:39195037..39195069,-!p2@CSRNP1!1.28!108.71!CSRNP1;;chr13:41635029..41635044,-!p4@ELF1!1.27!37.47!ELF1;;chr1:38325227..38325246,-!p2@MTF1!1.27!24.16!MTF1;;chr2:28615716..28615733,+!p1@FOSL2!1.26!795.64!FOSL2;;chr18:3449720..3449749,+!p2@TGIF1!1.26!35.93!TGIF1;;chr2:231090471..231090504,+!p2@SP140!1.26!17.34!SP140;;chr4:103423079..103423112,+!p4@NFKB1!1.26!17.03!NFKB1;;chr7:17338266..17338282,+!p1@AHR!1.25!177.46!AHR;;chr1:157108130..157108173,-!p1@ETV3!1.25!119.24!ETV3;;chr6:12011943..12012015,+!p2@HIVEP1!1.25!53.27!HIVEP1;;chr8:123793988..123794016,+!p1@ZHX2!1.25!29.42!ZHX2;;chr12:11802753..11802834,+!p2@ETV6!1.24!78.36!ETV6;;chr18:3448455..3448480,+!p5@TGIF1!1.24!30.04!TGIF1;;chr21:30672433..30672464,+!p6@BACH1!1.24!16.41!BACH1;;chr3:69788576..69788648,+!p1@MITF!1.23!83.93!MITF;;chr4:83822199..83822239,+!p2@THAP9!1.23!18.89!THAP9;;chr6:391743..391759,+!p1@IRF4!1.23!16.10!IRF4;;chr19:45251395..45251432,+!p8@BCL3!1.23!15.80!BCL3;;chr2:238600933..238600985,+!p3@LRRFIP1!1.22!84.24!LRRFIP1;;chr20:48807456..48807475,+!p3@CEBPB!1.22!29.73!CEBPB;;chr19:33793430..33793447,-!p1@CEBPA!1.21!63.49!CEBPA;;chr1:161736038..161736056,+!p4@ATF6!1.21!35.31!ATF6;;chr10:35484090..35484104,+!p6@CREM!1.21!15.18!CREM;;chr12:57914700..57914737,+!p7@MBD6!1.20!14.87!MBD6;;chrX:129244430..129244442,-!p5@ELF4!1.20!14.87!ELF4;;chr3:170075436..170075520,+!p1@SKIL!1.18!298.87!SKIL;;chr10:3827371..3827386,-!p2@KLF6!1.18!117.38!KLF6;;chr3:126191157..126191171,-!p4@ZXDC!1.18!14.25!ZXDC;;chr19:36389839..36389857,-!p4@NFKBID!1.18!14.25!NFKBID;;chr14:75745523..75745537,+!p1@FOS!1.17!1619.45!FOS;;chr19:45252008..45252024,+!p2@BCL3!1.17!45.53!BCL3;;chr2:28618532..28618610,+!p4@FOSL2!1.17!23.85!FOSL2;;chr18:3449586..3449617,+!p8@TGIF1!1.17!22.30!TGIF1;;chr10:31288329..31288353,-!p7@ZNF438!1.17!13.94!ZNF438;;chr13:41593392..41593403,-!p7@ELF1!1.17!13.63!ELF1;;chr1:212738742..212738755,+!p2@ATF3!1.17!13.63!ATF3;;chr20:48807171..48807234,+!p4@CEBPB!1.16!29.42!CEBPB;;chr1:25256439..25256476,-!p3@RUNX3!1.16!13.32!RUNX3;;chr12:48298785..48298828,-!p1@VDR!1.15!69.06!VDR;;chr2:61108771..61108789,+!p4@REL!1.15!19.82!REL;;chr8:81397820..81397836,+!p2@ZBTB10!1.15!16.41!ZBTB10;;chr11:65430554..65430579,-!p3@RELA!1.14!32.52!RELA;;chr5:142782823..142782854,-!p3@NR3C1!1.14!18.27!NR3C1;;chr21:40177845..40177863,+!p1@ETS2!1.13!735.55!ETS2;;chr3:101568349..101568365,+!p1@NFKBIZ!1.13!649.14!NFKBIZ;;chr10:104155455..104155479,+!p1@NFKB2!1.13!183.66!NFKB2;;chr7:17338324..17338341,+!p3@AHR!1.13!42.12!AHR;;chr3:12329358..12329393,+!p3@PPARG!1.13!30.66!PPARG;;chr7:128577972..128578047,+!p1@IRF5!1.13!19.82!IRF5;;chr1:156470515..156470542,-!p2@MEF2D!1.12!63.80!MEF2D;;chr10:35416142..35416169,+!p3@CREM!1.12!32.52!CREM;;chrX:153305962..153305995,-!p5@MECP2!1.12!12.08!MECP2;;chr11:615942..615957,-!p1@IRF7!1.11!111.49!IRF7;;chr1:935467..935484,-!p1@HES4!1.11!52.34!HES4;;chr10:35484804..35484902,+!p2@CREM!1.11!45.22!CREM;;chr9:110250697..110250738,-!p2@KLF4!1.11!13.94!KLF4;;chr5:88178983..88179012,-!p1@MEF2C!1.10!90.12!MEF2C;;chr19:47616992..47617011,-!p4@ZC3H4!1.10!24.78!ZC3H4;;chr8:72756063..72756125,-!p1@MSC!1.10!23.85!MSC;;chr14:64971014..64971044,+!p4@ZBTB1!1.10!19.20!ZBTB1;;chr9:102584241..102584261,+!p4@NR4A3!1.10!17.96!NR4A3;;chr20:48807648..48807671,+!p9@CEBPB!1.10!16.72!CEBPB;;chr8:81397846..81397860,+!p3@ZBTB10!1.10!14.56!ZBTB10;;chr7:115670792..115670797,-!p2@TFEC!1.10!11.46!TFEC;;chr12:96588219..96588263,+!p2@ELK3!1.09!81.76!ELK3;;chr12:96588279..96588299,+!p4@ELK3!1.08!52.65!ELK3;;chr3:5020939..5020952,+!p2@BHLHE40!1.08!35.00!BHLHE40;;chr6:20403916..20403965,+!p3@E2F3!1.07!48.62!E2F3;;chr20:48807615..48807644,+!p6@CEBPB!1.07!17.96!CEBPB;;chr20:48809000..48809053,+!p12@CEBPB!1.07!14.25!CEBPB;;chr6:15246261..15246312,+!p1@JARID2!1.06!254.89!JARID2;;chr9:88969303..88969335,-!p1@ZCCHC6!1.06!99.11!ZCCHC6;;chr2:208394817..208394834,+!p3@CREB1!1.06!42.43!CREB1;;chr14:35872926..35872951,-!p4@NFKBIA!1.06!14.87!NFKBIA;;chr1:221052733..221052749,+!p2@HLX!1.06!13.63!HLX;;chr2:145275228..145275241,-!p11@ZEB2!1.06!12.70!ZEB2;;chr4:106066776..106066791,+!p9@TET2!1.06!10.53!TET2;;chr19:50432104..50432126,+!p6@ATF5!1.06!10.53!ATF5;;chr21:36260980..36261011,-!p1@RUNX1!1.04!292.67!RUNX1;;chr21:40177892..40177903,+!p2@ETS2!1.04!40.26!ETS2;;chr2:231280954..231280965,+!p2@SP100!1.04!18.58!SP100;;chr1:221052776..221052799,+!p1@HLX!1.04!18.27!HLX;;chr18:3449330..3449344,+!p10@TGIF1!1.04!13.32!TGIF1;;chr3:39195139..39195150,-!p3@CSRNP1!1.04!12.70!CSRNP1;;chr2:102091566..102091581,-!p1@RFX8!1.04!9.91!RFX8;;chr17:38497715..38497734,+!p8@RARA!1.04!9.91!RARA;;chr19:36389729..36389751,-!p3@NFKBID!1.04!9.91!NFKBID;;chr17:38474489..38474548,+!p1@RARA!1.03!312.80!RARA;;chr9:88969339..88969422,-!p2@ZCCHC6!1.03!75.88!ZCCHC6;;chr12:52431016..52431071,+!p4@NR4A1!1.03!11.46!NR4A1;;chr19:42627037..42627084,-!p3@POU2F2!1.03!9.60!POU2F2;;chr18:3449695..3449712,+!p9@TGIF1!1.02!14.87!TGIF1;;chr12: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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405 | |||
|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057 | |ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057 | ||
|fonse_cell_line= | |fonse_cell_line= | ||
Line 40: | Line 42: | ||
|fonse_treatment_closure=EFO:0000369,FF:0000625,FF:0000630,FF:0011102,FF:11889-125D8 | |fonse_treatment_closure=EFO:0000369,FF:0000625,FF:0000630,FF:0011102,FF:11889-125D8 | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520B-glucan%252c%2520donor3.CNhs13495.11889-125D8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520B-glucan%252c%2520donor3.CNhs13495.11889-125D8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520B-glucan%252c%2520donor3.CNhs13495.11889-125D8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520B-glucan%252c%2520donor3.CNhs13495.11889-125D8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520B-glucan%252c%2520donor3.CNhs13495.11889-125D8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:11889-125D8 | |id=FF:11889-125D8 | ||
|is_a=EFO:0002091;;FF:0011102 | |is_a=EFO:0002091;;FF:0011102 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs13495 | |library_id=CNhs13495 | ||
| | |library_id_phase_based=2:CNhs13495 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11889 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11889 | |||
|name=CD14+ monocytes - treated with B-glucan, donor3 | |name=CD14+ monocytes - treated with B-glucan, donor3 | ||
|namespace= | |namespace= | ||
Line 50: | Line 61: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs13495,LSID1025,release012,COMPLETED | |profile_hcage=CNhs13495,LSID1025,release012,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 89: | Line 101: | ||
|top_motifs=FOSL2:4.6902785454;NFE2:4.61979268202;NFE2L2:4.54452264638;SREBF1,2:4.40119879736;BACH2:4.21943462103;HLF:4.10634670905;FOS_FOS{B,L1}_JUN{B,D}:4.07600414835;PAX2:4.02003416246;CEBPA,B_DDIT3:3.67005889758;SPIB:3.10496987773;ATF5_CREB3:2.99140056776;SPI1:2.93748608411;NFIL3:2.91627638368;HSF1,2:2.71514513826;ATF4:2.71433417407;NFKB1_REL_RELA:2.69121810209;EP300:2.60362271587;NFE2L1:2.58467286591;ATF6:2.58082962164;ETS1,2:2.56981962769;NANOG{mouse}:2.56751522739;CREB1:2.46478047212;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.40626373315;JUN:2.25710919346;FOXP3:2.12019882118;FOXN1:2.103224203;RUNX1..3:2.05606418525;DMAP1_NCOR{1,2}_SMARC:1.99575582945;MAFB:1.9469447056;NR1H4:1.87212716745;IRF1,2:1.54481321857;ATF2:1.49525702352;HIF1A:1.47182570933;PPARG:1.44795070604;PAX3,7:1.35619846525;ELF1,2,4:1.32658055753;STAT2,4,6:1.31833187941;IRF7:1.28179698046;TGIF1:1.13072024598;NFATC1..3:1.08772575177;PAX8:1.08679761047;PDX1:1.00714458112;HOX{A5,B5}:0.957227548022;RXRA_VDR{dimer}:0.881767804365;CDX1,2,4:0.740595333331;ESRRA:0.710704296656;HES1:0.705721828896;HMGA1,2:0.680126686092;PAX1,9:0.63155197494;HMX1:0.621886741688;XBP1:0.571969434491;BPTF:0.537010522063;TBP:0.513276330917;ALX4:0.509797806567;STAT5{A,B}:0.487050143115;SRF:0.458988504299;GLI1..3:0.427790000808;ESR1:0.348533167276;SMAD1..7,9:0.320766499758;AHR_ARNT_ARNT2:0.316800522879;MEF2{A,B,C,D}:0.297340069261;FOX{D1,D2}:0.201957077022;TFCP2:0.136497811792;ZBTB16:0.124286004645;NANOG:0.114681430486;FOXO1,3,4:0.111163370028;NR6A1:0.108737050415;TLX2:0.105388375625;RBPJ:0.0180443027428;EGR1..3:0.0141187794765;ALX1:0.00917056020089;PRDM1:-0.0225031022573;HBP1_HMGB_SSRP1_UBTF:-0.0567698475845;HOXA9_MEIS1:-0.0842405469592;EN1,2:-0.0877055369466;FOX{F1,F2,J1}:-0.106178413518;IKZF1:-0.112457292244;PITX1..3:-0.152612302668;RFX2..5_RFXANK_RFXAP:-0.1537518982;OCT4_SOX2{dimer}:-0.201602763682;POU2F1..3:-0.204449174815;IKZF2:-0.272112609336;GATA4:-0.318240507422;VSX1,2:-0.32401709428;MYB:-0.3758544767;FOXP1:-0.379665068571;NKX3-1:-0.509035328001;POU5F1:-0.63845613442;DBP:-0.721929970537;SOX2:-0.734367293198;FOXL1:-0.752863230306;MZF1:-0.764800730938;NFIX:-0.81643760011;FOXD3:-0.825577958173;SPZ1:-0.888805166047;TBX4,5:-0.897574409706;RFX1:-0.898447335429;REST:-0.91616197267;RXR{A,B,G}:-0.932275014045;HNF4A_NR2F1,2:-0.942644106156;T:-0.942913563449;RORA:-0.967794461017;NHLH1,2:-0.976556761509;RREB1:-0.977890338124;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.978117168403;PRRX1,2:-1.00601045968;PAX6:-1.02808665112;PAX4:-1.03457951366;ZNF238:-1.08745180101;STAT1,3:-1.0934574948;HNF1A:-1.09779381908;SP1:-1.10488129865;FOXM1:-1.15444802414;TAL1_TCF{3,4,12}:-1.15475261118;PATZ1:-1.17783116364;ZNF148:-1.19069192367;ZBTB6:-1.19700710259;MYFfamily:-1.2059964797;TEF:-1.23357891438;GATA6:-1.27699712069;CUX2:-1.30982532903;MED-1{core}:-1.31839553256;ZNF384:-1.33144673967;CRX:-1.33314564736;ZFP161:-1.333463658;TFDP1:-1.36668753129;NKX2-1,4:-1.37317308579;ZIC1..3:-1.37670883671;GZF1:-1.39459436415;NR3C1:-1.40047999304;SOX{8,9,10}:-1.40825451555;MTE{core}:-1.42333645174;TFAP2B:-1.46677254293;HOX{A4,D4}:-1.48479557522;NKX2-3_NKX2-5:-1.48864170473;SOX5:-1.50097247895;TLX1..3_NFIC{dimer}:-1.51188767738;GTF2A1,2:-1.51381526038;NKX6-1,2:-1.51553274742;ELK1,4_GABP{A,B1}:-1.57189864138;TEAD1:-1.63346834536;MAZ:-1.63648157241;E2F1..5:-1.63862050779;POU3F1..4:-1.64716022219;TFAP2{A,C}:-1.66146861124;TP53:-1.69181965482;MTF1:-1.7051921852;ZEB1:-1.71911055167;BREu{core}:-1.71944744501;GTF2I:-1.72203914247;MYOD1:-1.72213499557;TFAP4:-1.72573742258;FOXA2:-1.72586912353;EBF1:-1.73061085618;NKX3-2:-1.87425342336;HIC1:-1.8837945085;POU6F1:-1.89201317951;XCPE1{core}:-1.91488788087;bHLH_family:-1.93484104186;MYBL2:-1.94925598743;AIRE:-1.95101945116;NFY{A,B,C}:-1.97133702331;KLF4:-1.97464394415;ONECUT1,2:-1.97929004494;PBX1:-1.9812769725;NKX2-2,8:-2.03313511267;SNAI1..3:-2.04874358321;PAX5:-2.06948400611;UFEwm:-2.07085400598;HOX{A6,A7,B6,B7}:-2.16210536371;ZNF423:-2.1888229397;GCM1,2:-2.1929878528;ADNP_IRX_SIX_ZHX:-2.29847973177;GFI1B:-2.32772914402;LMO2:-2.43910739945;EVI1:-2.46613174184;NR5A1,2:-2.47256759029;ARID5B:-2.47916361499;TOPORS:-2.49654948958;CDC5L:-2.50087178713;FOX{I1,J2}:-2.53981554005;POU1F1:-2.58608069001;AR:-2.60416097078;SOX17:-2.66743067467;NRF1:-2.67248835068;YY1:-2.87479977144;FOXQ1:-3.04943549255;GFI1:-3.08600428615;LHX3,4:-3.18009974791;ZNF143:-3.32899601652;HAND1,2:-3.62814847899;LEF1_TCF7_TCF7L1,2:-3.73491546257 | |top_motifs=FOSL2:4.6902785454;NFE2:4.61979268202;NFE2L2:4.54452264638;SREBF1,2:4.40119879736;BACH2:4.21943462103;HLF:4.10634670905;FOS_FOS{B,L1}_JUN{B,D}:4.07600414835;PAX2:4.02003416246;CEBPA,B_DDIT3:3.67005889758;SPIB:3.10496987773;ATF5_CREB3:2.99140056776;SPI1:2.93748608411;NFIL3:2.91627638368;HSF1,2:2.71514513826;ATF4:2.71433417407;NFKB1_REL_RELA:2.69121810209;EP300:2.60362271587;NFE2L1:2.58467286591;ATF6:2.58082962164;ETS1,2:2.56981962769;NANOG{mouse}:2.56751522739;CREB1:2.46478047212;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.40626373315;JUN:2.25710919346;FOXP3:2.12019882118;FOXN1:2.103224203;RUNX1..3:2.05606418525;DMAP1_NCOR{1,2}_SMARC:1.99575582945;MAFB:1.9469447056;NR1H4:1.87212716745;IRF1,2:1.54481321857;ATF2:1.49525702352;HIF1A:1.47182570933;PPARG:1.44795070604;PAX3,7:1.35619846525;ELF1,2,4:1.32658055753;STAT2,4,6:1.31833187941;IRF7:1.28179698046;TGIF1:1.13072024598;NFATC1..3:1.08772575177;PAX8:1.08679761047;PDX1:1.00714458112;HOX{A5,B5}:0.957227548022;RXRA_VDR{dimer}:0.881767804365;CDX1,2,4:0.740595333331;ESRRA:0.710704296656;HES1:0.705721828896;HMGA1,2:0.680126686092;PAX1,9:0.63155197494;HMX1:0.621886741688;XBP1:0.571969434491;BPTF:0.537010522063;TBP:0.513276330917;ALX4:0.509797806567;STAT5{A,B}:0.487050143115;SRF:0.458988504299;GLI1..3:0.427790000808;ESR1:0.348533167276;SMAD1..7,9:0.320766499758;AHR_ARNT_ARNT2:0.316800522879;MEF2{A,B,C,D}:0.297340069261;FOX{D1,D2}:0.201957077022;TFCP2:0.136497811792;ZBTB16:0.124286004645;NANOG:0.114681430486;FOXO1,3,4:0.111163370028;NR6A1:0.108737050415;TLX2:0.105388375625;RBPJ:0.0180443027428;EGR1..3:0.0141187794765;ALX1:0.00917056020089;PRDM1:-0.0225031022573;HBP1_HMGB_SSRP1_UBTF:-0.0567698475845;HOXA9_MEIS1:-0.0842405469592;EN1,2:-0.0877055369466;FOX{F1,F2,J1}:-0.106178413518;IKZF1:-0.112457292244;PITX1..3:-0.152612302668;RFX2..5_RFXANK_RFXAP:-0.1537518982;OCT4_SOX2{dimer}:-0.201602763682;POU2F1..3:-0.204449174815;IKZF2:-0.272112609336;GATA4:-0.318240507422;VSX1,2:-0.32401709428;MYB:-0.3758544767;FOXP1:-0.379665068571;NKX3-1:-0.509035328001;POU5F1:-0.63845613442;DBP:-0.721929970537;SOX2:-0.734367293198;FOXL1:-0.752863230306;MZF1:-0.764800730938;NFIX:-0.81643760011;FOXD3:-0.825577958173;SPZ1:-0.888805166047;TBX4,5:-0.897574409706;RFX1:-0.898447335429;REST:-0.91616197267;RXR{A,B,G}:-0.932275014045;HNF4A_NR2F1,2:-0.942644106156;T:-0.942913563449;RORA:-0.967794461017;NHLH1,2:-0.976556761509;RREB1:-0.977890338124;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.978117168403;PRRX1,2:-1.00601045968;PAX6:-1.02808665112;PAX4:-1.03457951366;ZNF238:-1.08745180101;STAT1,3:-1.0934574948;HNF1A:-1.09779381908;SP1:-1.10488129865;FOXM1:-1.15444802414;TAL1_TCF{3,4,12}:-1.15475261118;PATZ1:-1.17783116364;ZNF148:-1.19069192367;ZBTB6:-1.19700710259;MYFfamily:-1.2059964797;TEF:-1.23357891438;GATA6:-1.27699712069;CUX2:-1.30982532903;MED-1{core}:-1.31839553256;ZNF384:-1.33144673967;CRX:-1.33314564736;ZFP161:-1.333463658;TFDP1:-1.36668753129;NKX2-1,4:-1.37317308579;ZIC1..3:-1.37670883671;GZF1:-1.39459436415;NR3C1:-1.40047999304;SOX{8,9,10}:-1.40825451555;MTE{core}:-1.42333645174;TFAP2B:-1.46677254293;HOX{A4,D4}:-1.48479557522;NKX2-3_NKX2-5:-1.48864170473;SOX5:-1.50097247895;TLX1..3_NFIC{dimer}:-1.51188767738;GTF2A1,2:-1.51381526038;NKX6-1,2:-1.51553274742;ELK1,4_GABP{A,B1}:-1.57189864138;TEAD1:-1.63346834536;MAZ:-1.63648157241;E2F1..5:-1.63862050779;POU3F1..4:-1.64716022219;TFAP2{A,C}:-1.66146861124;TP53:-1.69181965482;MTF1:-1.7051921852;ZEB1:-1.71911055167;BREu{core}:-1.71944744501;GTF2I:-1.72203914247;MYOD1:-1.72213499557;TFAP4:-1.72573742258;FOXA2:-1.72586912353;EBF1:-1.73061085618;NKX3-2:-1.87425342336;HIC1:-1.8837945085;POU6F1:-1.89201317951;XCPE1{core}:-1.91488788087;bHLH_family:-1.93484104186;MYBL2:-1.94925598743;AIRE:-1.95101945116;NFY{A,B,C}:-1.97133702331;KLF4:-1.97464394415;ONECUT1,2:-1.97929004494;PBX1:-1.9812769725;NKX2-2,8:-2.03313511267;SNAI1..3:-2.04874358321;PAX5:-2.06948400611;UFEwm:-2.07085400598;HOX{A6,A7,B6,B7}:-2.16210536371;ZNF423:-2.1888229397;GCM1,2:-2.1929878528;ADNP_IRX_SIX_ZHX:-2.29847973177;GFI1B:-2.32772914402;LMO2:-2.43910739945;EVI1:-2.46613174184;NR5A1,2:-2.47256759029;ARID5B:-2.47916361499;TOPORS:-2.49654948958;CDC5L:-2.50087178713;FOX{I1,J2}:-2.53981554005;POU1F1:-2.58608069001;AR:-2.60416097078;SOX17:-2.66743067467;NRF1:-2.67248835068;YY1:-2.87479977144;FOXQ1:-3.04943549255;GFI1:-3.08600428615;LHX3,4:-3.18009974791;ZNF143:-3.32899601652;HAND1,2:-3.62814847899;LEF1_TCF7_TCF7L1,2:-3.73491546257 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11889-125D8;search_select_hide=table117:FF:11889-125D8 | |||
}} | }} |
Latest revision as of 18:27, 4 June 2020
Name: | CD14+ monocytes - treated with B-glucan, donor3 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs13495 |
Sample type: | primary cells |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13495
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs13495
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.129 |
10 | 10 | 0.0184 |
100 | 100 | 0.785 |
101 | 101 | 0.976 |
102 | 102 | 0.769 |
103 | 103 | 0.348 |
104 | 104 | 0.487 |
105 | 105 | 0.1 |
106 | 106 | 7.06507e-4 |
107 | 107 | 0.339 |
108 | 108 | 0.888 |
109 | 109 | 0.259 |
11 | 11 | 0.219 |
110 | 110 | 0.228 |
111 | 111 | 0.0544 |
112 | 112 | 0.382 |
113 | 113 | 0.486 |
114 | 114 | 0.029 |
115 | 115 | 0.146 |
116 | 116 | 0.948 |
117 | 117 | 0.0463 |
118 | 118 | 0.208 |
119 | 119 | 0.142 |
12 | 12 | 0.282 |
120 | 120 | 0.973 |
121 | 121 | 0.378 |
122 | 122 | 0.623 |
123 | 123 | 0.242 |
124 | 124 | 0.495 |
125 | 125 | 0.482 |
126 | 126 | 0.182 |
127 | 127 | 0.387 |
128 | 128 | 0.0411 |
129 | 129 | 0.434 |
13 | 13 | 0.0944 |
130 | 130 | 0.167 |
131 | 131 | 0.811 |
132 | 132 | 0.0465 |
133 | 133 | 0.958 |
134 | 134 | 0.71 |
135 | 135 | 0.942 |
136 | 136 | 0.978 |
137 | 137 | 0.00821 |
138 | 138 | 0.286 |
139 | 139 | 0.0434 |
14 | 14 | 0.518 |
140 | 140 | 0.227 |
141 | 141 | 0.271 |
142 | 142 | 0.32 |
143 | 143 | 0.0383 |
144 | 144 | 0.698 |
145 | 145 | 0.495 |
146 | 146 | 0.449 |
147 | 147 | 0.629 |
148 | 148 | 0.0154 |
149 | 149 | 0.967 |
15 | 15 | 0.174 |
150 | 150 | 0.449 |
151 | 151 | 0.428 |
152 | 152 | 0.19 |
153 | 153 | 0.694 |
154 | 154 | 0.642 |
155 | 155 | 0.808 |
156 | 156 | 0.613 |
157 | 157 | 0.313 |
158 | 158 | 0.0105 |
159 | 159 | 0.453 |
16 | 16 | 0.413 |
160 | 160 | 0.492 |
161 | 161 | 0.474 |
162 | 162 | 0.191 |
163 | 163 | 0.17 |
164 | 164 | 0.0888 |
165 | 165 | 0.202 |
166 | 166 | 0.465 |
167 | 167 | 0.218 |
168 | 168 | 0.339 |
169 | 169 | 0.0092 |
17 | 17 | 0.256 |
18 | 18 | 0.141 |
19 | 19 | 0.538 |
2 | 2 | 0.504 |
20 | 20 | 0.205 |
21 | 21 | 0.679 |
22 | 22 | 0.266 |
23 | 23 | 0.0617 |
24 | 24 | 0.354 |
25 | 25 | 0.382 |
26 | 26 | 0.0502 |
27 | 27 | 0.549 |
28 | 28 | 0.419 |
29 | 29 | 0.277 |
3 | 3 | 0.185 |
30 | 30 | 0.485 |
31 | 31 | 0.817 |
32 | 32 | 0.47 |
33 | 33 | 0.298 |
34 | 34 | 0.686 |
35 | 35 | 0.141 |
36 | 36 | 0.102 |
37 | 37 | 0.0625 |
38 | 38 | 0.349 |
39 | 39 | 0.857 |
4 | 4 | 0.983 |
40 | 40 | 0.133 |
41 | 41 | 0.00444 |
42 | 42 | 0.459 |
43 | 43 | 0.027 |
44 | 44 | 0.75 |
45 | 45 | 0.731 |
46 | 46 | 0.225 |
47 | 47 | 0.692 |
48 | 48 | 0.557 |
49 | 49 | 0.114 |
5 | 5 | 0.278 |
50 | 50 | 0.905 |
51 | 51 | 0.509 |
52 | 52 | 0.413 |
53 | 53 | 0.492 |
54 | 54 | 0.438 |
55 | 55 | 0.703 |
56 | 56 | 0.729 |
57 | 57 | 0.877 |
58 | 58 | 0.166 |
59 | 59 | 0.277 |
6 | 6 | 0.722 |
60 | 60 | 0.0639 |
61 | 61 | 0.683 |
62 | 62 | 0.0967 |
63 | 63 | 0.624 |
64 | 64 | 0.472 |
65 | 65 | 0.242 |
66 | 66 | 0.392 |
67 | 67 | 0.499 |
68 | 68 | 0.965 |
69 | 69 | 0.663 |
7 | 7 | 0.268 |
70 | 70 | 0.0586 |
71 | 71 | 0.0231 |
72 | 72 | 0.33 |
73 | 73 | 0.139 |
74 | 74 | 0.19 |
75 | 75 | 0.0869 |
76 | 76 | 0.141 |
77 | 77 | 0.613 |
78 | 78 | 0.116 |
79 | 79 | 0.844 |
8 | 8 | 0.459 |
80 | 80 | 0.218 |
81 | 81 | 0.421 |
82 | 82 | 0.227 |
83 | 83 | 0.00809 |
84 | 84 | 0.218 |
85 | 85 | 0.0182 |
86 | 86 | 0.0441 |
87 | 87 | 0.552 |
88 | 88 | 0.662 |
89 | 89 | 0.285 |
9 | 9 | 0.463 |
90 | 90 | 0.122 |
91 | 91 | 0.374 |
92 | 92 | 0.315 |
93 | 93 | 0.331 |
94 | 94 | 0.0575 |
95 | 95 | 0.402 |
96 | 96 | 0.419 |
97 | 97 | 0.747 |
98 | 98 | 0.15 |
99 | 99 | 0.0308 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs13495
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0011102 human CD14-positive monocytes - treated with B-glucan sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000630 (beta-glucan treatment sample)
0011102 (human CD14-positive monocytes - treated with B-glucan sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)