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{{f5samples
{{f5samples
|DRA_sample_Accession=CAGE@SAMD00004697
|accession_numbers=CAGE;DRX008540;DRR009412;DRZ000837;DRZ002222;DRZ012187;DRZ013572
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0005631,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000476,UBERON:0000478,UBERON:0000158,UBERON:0003124,UBERON:0000920
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002384,UBERON:0000479,UBERON:0000064,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0004923,UBERON:0005631,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0000476,UBERON:0000478,UBERON:0000158,UBERON:0003124,UBERON:0000920
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000349,CL:0000255,CL:0000034,CL:0002541
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000723,CL:0000048,CL:0000548,CL:0002320,CL:0002371,CL:0000219,CL:0000134,CL:0000349,CL:0000255,CL:0000034,CL:0002541
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|created_by=
|created_by=
|creation_date=
|creation_date=
|datafreeze_phase=1
|data_phase=2
|datafreeze_phase=2
|def=
|def=
|expression_enrichment_score=chr19:45971246..45971265,+!p1@FOSB!2.39!4236.34!FOSB;;chr3:12330560..12330579,+!p1@PPARG!2.11!146.10!PPARG;;chr6:53013620..53013644,-!p1@GCM1!2.04!107.50!GCM1;;chr10:8096772..8096787,+!p2@GATA3!1.97!108.46!GATA3;;chr3:111314186..111314204,-!p1@ZBED2!1.96!89.32!ZBED2;;chr14:75745523..75745537,+!p1@FOS!1.95!9843.10!FOS;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.94!86.77!PEG3;;chr9:110252035..110252057,-!p1@KLF4!1.90!1177.11!KLF4;;chr10:8096631..8096660,+!p1@GATA3!1.90!94.42!GATA3;;chr11:2291814..2291825,-!p2@ASCL2!1.88!74.97!ASCL2;;chr4:174451370..174451387,-!p1@HAND2!1.85!69.86!HAND2;;chr1:6479968..6479986,-!p1@HES2!1.82!64.44!HES2;;chr14:75746722..75746777,+!p2@FOS!1.81!80.39!FOS;;chr1:201979743..201979762,+!p1@ELF3!1.79!60.61!ELF3;;chr1:201979703..201979721,+!p2@ELF3!1.75!55.19!ELF3;;chr2:46524897..46524911,+!p2@EPAS1!1.72!137.49!EPAS1;;chr20:55204351..55204377,+!p1@TFAP2C!1.72!65.40!TFAP2C;;chr8:102504651..102504683,+!p1@GRHL2!1.71!50.72!GRHL2;;chr5:2751762..2751784,-!p1@IRX2!1.71!50.40!IRX2;;chr3:128212033..128212051,-!p1@GATA2!1.68!46.57!GATA2;;chr1:212782094..212782109,+!p1@ATF3!1.63!1062.27!ATF3;;chr19:33793430..33793447,-!p1@CEBPA!1.60!156.31!CEBPA;;chr9:77112244..77112262,+!p1@RORB!1.60!43.70!RORB;;chr17:48072574..48072597,-!p1@DLX3!1.59!37.64!DLX3;;chr8:99956662..99956684,+!p1@OSR2!1.52!49.13!OSR2;;chr5:2751785..2751808,-!p2@IRX2!1.50!30.31!IRX2;;chr17:7493405..7493419,-!p1@SOX15!1.49!29.67!SOX15;;chr13:73633131..73633149,+!p1@KLF5!1.48!295.40!KLF5;;chr1:209979467..209979494,-!p1@IRF6!1.48!32.86!IRF6;;chr7:96654133..96654150,-!p1@DLX5!1.48!29.35!DLX5;;chrX:70316005..70316034,+!p2@FOXO4!1.46!50.08!FOXO4;;chr6:10412600..10412637,-!p1@TFAP2A!1.44!44.02!TFAP2A;;chr11:12696102..12696113,+!p5@TEAD1!1.42!25.52!TEAD1;;chr19:45977697..45977713,+!p4@FOSB!1.42!25.52!FOSB;;chr7:1577899..1577943,+!p3@MAFK!1.37!22.65!MAFK;;chr10:8095593..8095625,+!p3@GATA3!1.35!25.20!GATA3;;chr3:128206762..128206781,-!p2@GATA2!1.34!126.96!GATA2;;chr20:39317868..39317884,-!p1@MAFB!1.33!233.19!MAFB;;chr6:19837592..19837621,+!p1@ID4!1.30!113.25!ID4;;chr8:135708787..135708805,-!p2@ZFAT!1.30!19.14!ZFAT;;chr6:10415276..10415341,-!p2@TFAP2A!1.29!22.33!TFAP2A;;chr19:929027..929051,+!p4@ARID3A!1.28!18.18!ARID3A;;chr6:10419884..10419898,-!p11@TFAP2A!1.28!17.86!TFAP2A;;chr19:48773337..48773339,+!p2@ZNF114!1.27!17.55!ZNF114;;chr11:65554528..65554546,+!p1@OVOL1!1.26!17.23!OVOL1;;chr3:101568349..101568365,+!p1@NFKBIZ!1.25!848.86!NFKBIZ;;chr6:10415484..10415508,-!p3@TFAP2A!1.25!16.59!TFAP2A;;chr6:53013605..53013616,-!p2@GCM1!1.25!16.59!GCM1;;chr10:8097321..8097348,+!p4@GATA3!1.24!16.27!GATA3;;chr14:75747250..75747267,+!p5@FOS!1.24!16.27!FOS;;chr2:46612891..46612907,+!p10@EPAS1!1.24!16.27!EPAS1;;chr5:153857778..153857794,-!p1@HAND1!1.22!15.63!HAND1;;chr5:137801160..137801176,+!p1@EGR1!1.21!1466.77!EGR1;;chr12:52445218..52445237,+!p1@NR4A1!1.21!190.76!NR4A1;;chr4:87857474..87857489,+!p7@AFF1!1.20!25.52!AFF1;;chr8:102504690..102504704,+!p3@GRHL2!1.20!14.99!GRHL2;;chr1:40367668..40367684,-!p2@MYCL1!1.20!14.99!MYCL1;;chr16:31076332..31076388,-!p3@ZNF668!1.20!14.67!ZNF668;;chr1:59249732..59249749,-!p2@JUN!1.19!172.26!JUN;;chr11:2292226..2292270,-!p1@ASCL2!1.19!14.36!ASCL2;;chrX:70316101..70316112,+!p5@FOXO4!1.19!14.36!FOXO4;;chr6:10419768..10419819,-!p6@TFAP2A!1.16!13.40!TFAP2A;;chr13:45010939..45011033,-!p1@TSC22D1!1.15!845.67!TSC22D1;;chrX:56258844..56258882,+!p1@KLF8!1.14!17.55!KLF8;;chr3:141719209..141719215,-!p10@TFDP2!1.14!12.76!TFDP2;;chr16:67881534..67881549,-!p4@CENPT!1.14!12.76!CENPT;;chr22:38598086..38598105,+!p1@MAFF!1.12!128.24!MAFF;;chr5:137804484..137804498,+!p2@EGR1!1.12!49.45!EGR1;;chr2:46524878..46524891,+!p3@EPAS1!1.12!21.69!EPAS1;;chr11:12696071..12696086,+!p3@TEAD1!1.12!16.27!TEAD1;;chrX:70316072..70316085,+!p4@FOXO4!1.12!12.12!FOXO4;;chr8:102504979..102505010,+!p2@GRHL2!1.12!12.12!GRHL2;;chr16:85932760..85932775,+!p1@IRF8!1.11!11.80!IRF8;;chr19:12902289..12902307,+!p1@JUNB!1.10!2657.60!JUNB;;chr2:19558373..19558392,-!p1@OSR1!1.10!31.90!OSR1;;chr14:75747296..75747329,+!p4@FOS!1.10!11.48!FOS;;chr2:70142232..70142251,+!p1@MXD1!1.09!64.12!MXD1;;chr14:75746781..75746799,+!p6@FOS!1.09!11.17!FOS;;chrY:2803415..2803468,+!p1@ZFY!1.09!11.17!ZFY;;chr3:39195037..39195069,-!p2@CSRNP1!1.08!68.90!CSRNP1;;chr7:28725715..28725727,+!p3@CREB5!1.08!13.08!CREB5;;chr19:45974032..45974054,+!p9@FOSB!1.07!10.85!FOSB;;chr14:35873947..35873965,-!p1@NFKBIA!1.05!658.42!NFKBIA;;chr1:59249688..59249703,-!p3@JUN!1.05!62.21!JUN;;chr2:68592406..68592424,+!p1@PLEK!1.05!10.21!PLEK;;chr16:67881588..67881612,-!p2@CENPT!1.04!13.72!CENPT;;chr11:65554563..65554576,+!p2@OVOL1!1.04!9.89!OVOL1;;chr19:45972203..45972226,+!p5@FOSB!1.04!9.89!FOSB;;chr19:45977993..45978005,+!p6@FOSB!1.04!9.89!FOSB;;chr3:32023232..32023273,+!p1@ZNF860!1.03!14.04!ZNF860;;chr2:10091815..10091864,+!p1@GRHL1!1.03!13.08!GRHL1;;chr9:110251836..110251887,-!p4@KLF4!1.03!13.08!KLF4;;chr1:59249707..59249727,-!p1@JUN!1.02!403.54!JUN;;chr6:28048343..28048354,+!p1@ZNF165!1.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|expression_enrichment_score=chr19:45971246..45971265,+!p1@FOSB!2.39!4236.34!FOSB;;chr3:12330560..12330579,+!p1@PPARG!2.11!146.10!PPARG;;chr6:53013620..53013644,-!p1@GCM1!2.04!107.50!GCM1;;chr10:8096772..8096787,+!p2@GATA3!1.97!108.46!GATA3;;chr3:111314186..111314204,-!p1@ZBED2!1.96!89.32!ZBED2;;chr14:75745523..75745537,+!p1@FOS!1.95!9843.10!FOS;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.94!86.77!PEG3;;chr9:110252035..110252057,-!p1@KLF4!1.90!1177.11!KLF4;;chr10:8096631..8096660,+!p1@GATA3!1.90!94.42!GATA3;;chr11:2291814..2291825,-!p2@ASCL2!1.88!74.97!ASCL2;;chr4:174451370..174451387,-!p1@HAND2!1.85!69.86!HAND2;;chr1:6479968..6479986,-!p1@HES2!1.82!64.44!HES2;;chr14:75746722..75746777,+!p2@FOS!1.81!80.39!FOS;;chr1:201979743..201979762,+!p1@ELF3!1.79!60.61!ELF3;;chr1:201979703..201979721,+!p2@ELF3!1.75!55.19!ELF3;;chr2:46524897..46524911,+!p2@EPAS1!1.72!137.49!EPAS1;;chr20:55204351..55204377,+!p1@TFAP2C!1.72!65.40!TFAP2C;;chr8:102504651..102504683,+!p1@GRHL2!1.71!50.72!GRHL2;;chr5:2751762..2751784,-!p1@IRX2!1.71!50.40!IRX2;;chr3:128212033..128212051,-!p1@GATA2!1.68!46.57!GATA2;;chr1:212782094..212782109,+!p1@ATF3!1.63!1062.27!ATF3;;chr19:33793430..33793447,-!p1@CEBPA!1.60!156.31!CEBPA;;chr9:77112244..77112262,+!p1@RORB!1.60!43.70!RORB;;chr17:48072574..48072597,-!p1@DLX3!1.59!37.64!DLX3;;chr8:99956662..99956684,+!p1@OSR2!1.52!49.13!OSR2;;chr5:2751785..2751808,-!p2@IRX2!1.50!30.31!IRX2;;chr17:7493405..7493419,-!p1@SOX15!1.49!29.67!SOX15;;chr13:73633131..73633149,+!p1@KLF5!1.48!295.40!KLF5;;chr1:209979467..209979494,-!p1@IRF6!1.48!32.86!IRF6;;chr7:96654133..96654150,-!p1@DLX5!1.48!29.35!DLX5;;chrX:70316005..70316034,+!p2@FOXO4!1.46!50.08!FOXO4;;chr6:10412600..10412637,-!p1@TFAP2A!1.44!44.02!TFAP2A;;chr11:12696102..12696113,+!p5@TEAD1!1.42!25.52!TEAD1;;chr19:45977697..45977713,+!p4@FOSB!1.42!25.52!FOSB;;chr7:1577899..1577943,+!p3@MAFK!1.37!22.65!MAFK;;chr10:8095593..8095625,+!p3@GATA3!1.35!25.20!GATA3;;chr3:128206762..128206781,-!p2@GATA2!1.34!126.96!GATA2;;chr20:39317868..39317884,-!p1@MAFB!1.33!233.19!MAFB;;chr6:19837592..19837621,+!p1@ID4!1.30!113.25!ID4;;chr8:135708787..135708805,-!p2@ZFAT!1.30!19.14!ZFAT;;chr6:10415276..10415341,-!p2@TFAP2A!1.29!22.33!TFAP2A;;chr19:929027..929051,+!p4@ARID3A!1.28!18.18!ARID3A;;chr6:10419884..10419898,-!p11@TFAP2A!1.28!17.86!TFAP2A;;chr19:48773337..48773339,+!p2@ZNF114!1.27!17.55!ZNF114;;chr11:65554528..65554546,+!p1@OVOL1!1.26!17.23!OVOL1;;chr3:101568349..101568365,+!p1@NFKBIZ!1.25!848.86!NFKBIZ;;chr6:10415484..10415508,-!p3@TFAP2A!1.25!16.59!TFAP2A;;chr6:53013605..53013616,-!p2@GCM1!1.25!16.59!GCM1;;chr10:8097321..8097348,+!p4@GATA3!1.24!16.27!GATA3;;chr14:75747250..75747267,+!p5@FOS!1.24!16.27!FOS;;chr2:46612891..46612907,+!p10@EPAS1!1.24!16.27!EPAS1;;chr5:153857778..153857794,-!p1@HAND1!1.22!15.63!HAND1;;chr5:137801160..137801176,+!p1@EGR1!1.21!1466.77!EGR1;;chr12:52445218..52445237,+!p1@NR4A1!1.21!190.76!NR4A1;;chr4:87857474..87857489,+!p7@AFF1!1.20!25.52!AFF1;;chr8:102504690..102504704,+!p3@GRHL2!1.20!14.99!GRHL2;;chr1:40367668..40367684,-!p2@MYCL1!1.20!14.99!MYCL1;;chr16:31076332..31076388,-!p3@ZNF668!1.20!14.67!ZNF668;;chr1:59249732..59249749,-!p2@JUN!1.19!172.26!JUN;;chr11:2292226..2292270,-!p1@ASCL2!1.19!14.36!ASCL2;;chrX:70316101..70316112,+!p5@FOXO4!1.19!14.36!FOXO4;;chr6:10419768..10419819,-!p6@TFAP2A!1.16!13.40!TFAP2A;;chr13:45010939..45011033,-!p1@TSC22D1!1.15!845.67!TSC22D1;;chrX:56258844..56258882,+!p1@KLF8!1.14!17.55!KLF8;;chr3:141719209..141719215,-!p10@TFDP2!1.14!12.76!TFDP2;;chr16:67881534..67881549,-!p4@CENPT!1.14!12.76!CENPT;;chr22:38598086..38598105,+!p1@MAFF!1.12!128.24!MAFF;;chr5:137804484..137804498,+!p2@EGR1!1.12!49.45!EGR1;;chr2:46524878..46524891,+!p3@EPAS1!1.12!21.69!EPAS1;;chr11:12696071..12696086,+!p3@TEAD1!1.12!16.27!TEAD1;;chrX:70316072..70316085,+!p4@FOXO4!1.12!12.12!FOXO4;;chr8:102504979..102505010,+!p2@GRHL2!1.12!12.12!GRHL2;;chr16:85932760..85932775,+!p1@IRF8!1.11!11.80!IRF8;;chr19:12902289..12902307,+!p1@JUNB!1.10!2657.60!JUNB;;chr2:19558373..19558392,-!p1@OSR1!1.10!31.90!OSR1;;chr14:75747296..75747329,+!p4@FOS!1.10!11.48!FOS;;chr2:70142232..70142251,+!p1@MXD1!1.09!64.12!MXD1;;chr14:75746781..75746799,+!p6@FOS!1.09!11.17!FOS;;chrY:2803415..2803468,+!p1@ZFY!1.09!11.17!ZFY;;chr3:39195037..39195069,-!p2@CSRNP1!1.08!68.90!CSRNP1;;chr7:28725715..28725727,+!p3@CREB5!1.08!13.08!CREB5;;chr19:45974032..45974054,+!p9@FOSB!1.07!10.85!FOSB;;chr14:35873947..35873965,-!p1@NFKBIA!1.05!658.42!NFKBIA;;chr1:59249688..59249703,-!p3@JUN!1.05!62.21!JUN;;chr2:68592406..68592424,+!p1@PLEK!1.05!10.21!PLEK;;chr16:67881588..67881612,-!p2@CENPT!1.04!13.72!CENPT;;chr11:65554563..65554576,+!p2@OVOL1!1.04!9.89!OVOL1;;chr19:45972203..45972226,+!p5@FOSB!1.04!9.89!FOSB;;chr19:45977993..45978005,+!p6@FOSB!1.04!9.89!FOSB;;chr3:32023232..32023273,+!p1@ZNF860!1.03!14.04!ZNF860;;chr2:10091815..10091864,+!p1@GRHL1!1.03!13.08!GRHL1;;chr9:110251836..110251887,-!p4@KLF4!1.03!13.08!KLF4;;chr1:59249707..59249727,-!p1@JUN!1.02!403.54!JUN;;chr6:28048343..28048354,+!p1@ZNF165!1.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|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002541;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000158;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003124
|ffid_belonging_in_development=CL:0000134
|fonse_cell_line=
|fonse_cell_line=
|fonse_cell_line_closure=
|fonse_cell_line_closure=
Line 37: Line 42:
|fonse_treatment_closure=
|fonse_treatment_closure=
|has_quality=
|has_quality=
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/chorionic%2520membrane%2520cells%252c%2520donor1.CNhs12504.12238-129G6.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/chorionic%2520membrane%2520cells%252c%2520donor1.CNhs12504.12238-129G6.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/chorionic%2520membrane%2520cells%252c%2520donor1.CNhs12504.12238-129G6.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/chorionic%2520membrane%2520cells%252c%2520donor1.CNhs12504.12238-129G6.hg38.nobarcode.bam
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/chorionic%2520membrane%2520cells%252c%2520donor1.CNhs12504.12238-129G6.hg38.nobarcode.ctss.bed.gz
|id=FF:12238-129G6
|id=FF:12238-129G6
|is_a=EFO:0002091;;FF:0000038
|is_a=EFO:0002091;;FF:0000038
|is_obsolete=
|is_obsolete=
|library_id=CNhs12504
|library_id_phase_based=2:CNhs12504
|microRNAs=
|microRNAs_nn=
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;12238
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;12238
|name=chorionic membrane cells, donor1
|name=chorionic membrane cells, donor1
|namespace=FANTOM5
|namespace=FANTOM5
Line 45: Line 61:
|profile_cagescan=,,,
|profile_cagescan=,,,
|profile_hcage=CNhs12504,LSID918,release012,COMPLETED
|profile_hcage=CNhs12504,LSID918,release012,COMPLETED
|profile_rnaseq=,,,
|profile_rnaseq=
|profile_srnaseq=,,,
|profile_srnaseq=,,,
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Line 60: Line 79:
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|sample_cell_line=
Line 81: Line 101:
|top_motifs=TBP:2.73073012677;XCPE1{core}:1.97654676883;NKX2-1,4:1.93749128658;PPARG:1.88372064424;FOXL1:1.86425588661;SP1:1.67424566782;HIF1A:1.6520386884;GLI1..3:1.6404378915;EP300:1.57293088428;GCM1,2:1.50525981033;FOXO1,3,4:1.47603980561;SNAI1..3:1.42543803181;IKZF1:1.3489326172;HMX1:1.26789468992;POU2F1..3:1.24428758457;ZNF148:1.2161413389;EN1,2:1.19102742466;TBX4,5:1.17749321951;FOX{D1,D2}:1.16649188227;ALX4:1.13301002155;RXRA_VDR{dimer}:1.13170466913;CDC5L:1.12007599353;EBF1:1.11881151086;TEAD1:1.11568227401;PAX4:1.01397536113;TFAP2{A,C}:0.95770131824;STAT2,4,6:0.951995053748;HSF1,2:0.937945146972;UFEwm:0.882142362415;NR1H4:0.850991902865;MAZ:0.842505921536;BPTF:0.835326574869;GZF1:0.796638431524;RORA:0.790686194377;FOS_FOS{B,L1}_JUN{B,D}:0.762766475246;TLX2:0.732381804798;BACH2:0.720347746636;MYBL2:0.707767039671;IRF7:0.644893899198;ZNF238:0.633937665685;FOXM1:0.591690804803;FOXN1:0.588491126987;ZEB1:0.582318416451;SRF:0.575824327572;PAX8:0.571153095064;ATF6:0.546255799016;JUN:0.499692426364;HOXA9_MEIS1:0.497767037935;HOX{A6,A7,B6,B7}:0.490190925012;T:0.480739764641;FOSL2:0.440281989119;HLF:0.438483636912;SMAD1..7,9:0.437418975533;SPZ1:0.400247084461;MAFB:0.395049982201;HES1:0.388002031562;TFCP2:0.384490854873;AR:0.372189648324;NFE2:0.336278715747;ESR1:0.332187794917;POU3F1..4:0.328186517064;MYOD1:0.317936062972;GATA6:0.317080104022;FOXP3:0.310548109389;MED-1{core}:0.30070384562;TP53:0.288796104274;XBP1:0.269987935501;IRF1,2:0.254135714496;HNF1A:0.252412781309;NFKB1_REL_RELA:0.238756865913;ZBTB6:0.235779071553;bHLH_family:0.229034370349;NKX3-1:0.223192908785;NFIL3:0.17684291301;EVI1:0.160733373732;VSX1,2:0.154985556582;FOX{I1,J2}:0.149476707433;NFATC1..3:0.102388638378;AIRE:0.10037501643;EGR1..3:0.0994175192617;CREB1:0.0804497625889;POU1F1:0.0422435989814;ATF5_CREB3:0.0297110180498;GTF2I:0.0228529463062;GTF2A1,2:0.0183682501368;HBP1_HMGB_SSRP1_UBTF:0.0127848718508;PAX1,9:-0.011860514885;TFAP4:-0.0140780525398;SOX5:-0.0263739468292;POU6F1:-0.039217899805;PATZ1:-0.053930912869;SOX17:-0.0589761654464;TFAP2B:-0.0650736582644;MEF2{A,B,C,D}:-0.0975255862581;MTF1:-0.102442353372;ATF4:-0.125731103768;HIC1:-0.129189854776;ATF2:-0.138269999445;HAND1,2:-0.140052597106;ONECUT1,2:-0.144450518549;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.147755577261;SPI1:-0.175949580988;FOXQ1:-0.187332228581;PAX2:-0.197057583145;NR6A1:-0.208035261947;STAT5{A,B}:-0.214575424433;SREBF1,2:-0.214662579846;NFY{A,B,C}:-0.217431893704;RUNX1..3:-0.228002700295;RFX2..5_RFXANK_RFXAP:-0.230067873024;NKX2-2,8:-0.233218971026;ZNF423:-0.268533157885;TAL1_TCF{3,4,12}:-0.271291309543;ETS1,2:-0.273703826796;MTE{core}:-0.314060341997;ARID5B:-0.316830142526;NKX3-2:-0.348152854541;ESRRA:-0.366102630047;KLF4:-0.372099123306;TLX1..3_NFIC{dimer}:-0.380968270196;ZIC1..3:-0.388243541878;RFX1:-0.404437066783;HOX{A4,D4}:-0.405682537829;CEBPA,B_DDIT3:-0.406787249635;MYFfamily:-0.413382416267;ELK1,4_GABP{A,B1}:-0.420818845728;PITX1..3:-0.4392287487;REST:-0.459766516797;RXR{A,B,G}:-0.460746505642;PAX5:-0.48332964805;HNF4A_NR2F1,2:-0.486635075216;ADNP_IRX_SIX_ZHX:-0.505454157913;ZFP161:-0.512039048569;SPIB:-0.51398530524;TOPORS:-0.521989299132;MZF1:-0.527864946167;NR3C1:-0.573994361477;OCT4_SOX2{dimer}:-0.586311571098;HMGA1,2:-0.586856769736;FOX{F1,F2,J1}:-0.589910912956;ELF1,2,4:-0.59133828656;PAX3,7:-0.622238396813;HOX{A5,B5}:-0.638667340054;NANOG{mouse}:-0.643952035367;TGIF1:-0.64629868443;ZNF143:-0.653420187659;ZNF384:-0.659220234547;STAT1,3:-0.70131636348;LEF1_TCF7_TCF7L1,2:-0.702397439956;CUX2:-0.727544553757;GATA4:-0.743375286809;FOXP1:-0.756775493566;PRRX1,2:-0.768217971276;NKX2-3_NKX2-5:-0.768407357389;GFI1:-0.782603604599;PRDM1:-0.808919953077;RREB1:-0.823216563452;NHLH1,2:-0.827271365415;SOX2:-0.83399620701;GFI1B:-0.845640976741;TEF:-0.852823990695;NFE2L2:-0.856366553079;DBP:-0.85711201111;SOX{8,9,10}:-0.860830527636;RBPJ:-0.893499535625;MYB:-0.904261392626;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.947385194818;ZBTB16:-0.954734935171;IKZF2:-0.982334592421;DMAP1_NCOR{1,2}_SMARC:-0.989261621394;NFE2L1:-1.01306440469;NRF1:-1.01994017457;E2F1..5:-1.02150436251;PBX1:-1.0634877983;LMO2:-1.14234093442;PAX6:-1.15128333574;ALX1:-1.15481815007;TFDP1:-1.1630374165;AHR_ARNT_ARNT2:-1.166252533;YY1:-1.34540182023;LHX3,4:-1.41504282105;CRX:-1.47458430854;BREu{core}:-1.50720819004;CDX1,2,4:-1.51511484171;PDX1:-1.55321519772;NANOG:-1.58948056816;FOXA2:-1.62797963046;NR5A1,2:-1.74348262463;FOXD3:-1.75006326247;NFIX:-1.9153534572;NKX6-1,2:-2.05699652942;POU5F1:-2.64976984371
|top_motifs=TBP:2.73073012677;XCPE1{core}:1.97654676883;NKX2-1,4:1.93749128658;PPARG:1.88372064424;FOXL1:1.86425588661;SP1:1.67424566782;HIF1A:1.6520386884;GLI1..3:1.6404378915;EP300:1.57293088428;GCM1,2:1.50525981033;FOXO1,3,4:1.47603980561;SNAI1..3:1.42543803181;IKZF1:1.3489326172;HMX1:1.26789468992;POU2F1..3:1.24428758457;ZNF148:1.2161413389;EN1,2:1.19102742466;TBX4,5:1.17749321951;FOX{D1,D2}:1.16649188227;ALX4:1.13301002155;RXRA_VDR{dimer}:1.13170466913;CDC5L:1.12007599353;EBF1:1.11881151086;TEAD1:1.11568227401;PAX4:1.01397536113;TFAP2{A,C}:0.95770131824;STAT2,4,6:0.951995053748;HSF1,2:0.937945146972;UFEwm:0.882142362415;NR1H4:0.850991902865;MAZ:0.842505921536;BPTF:0.835326574869;GZF1:0.796638431524;RORA:0.790686194377;FOS_FOS{B,L1}_JUN{B,D}:0.762766475246;TLX2:0.732381804798;BACH2:0.720347746636;MYBL2:0.707767039671;IRF7:0.644893899198;ZNF238:0.633937665685;FOXM1:0.591690804803;FOXN1:0.588491126987;ZEB1:0.582318416451;SRF:0.575824327572;PAX8:0.571153095064;ATF6:0.546255799016;JUN:0.499692426364;HOXA9_MEIS1:0.497767037935;HOX{A6,A7,B6,B7}:0.490190925012;T:0.480739764641;FOSL2:0.440281989119;HLF:0.438483636912;SMAD1..7,9:0.437418975533;SPZ1:0.400247084461;MAFB:0.395049982201;HES1:0.388002031562;TFCP2:0.384490854873;AR:0.372189648324;NFE2:0.336278715747;ESR1:0.332187794917;POU3F1..4:0.328186517064;MYOD1:0.317936062972;GATA6:0.317080104022;FOXP3:0.310548109389;MED-1{core}:0.30070384562;TP53:0.288796104274;XBP1:0.269987935501;IRF1,2:0.254135714496;HNF1A:0.252412781309;NFKB1_REL_RELA:0.238756865913;ZBTB6:0.235779071553;bHLH_family:0.229034370349;NKX3-1:0.223192908785;NFIL3:0.17684291301;EVI1:0.160733373732;VSX1,2:0.154985556582;FOX{I1,J2}:0.149476707433;NFATC1..3:0.102388638378;AIRE:0.10037501643;EGR1..3:0.0994175192617;CREB1:0.0804497625889;POU1F1:0.0422435989814;ATF5_CREB3:0.0297110180498;GTF2I:0.0228529463062;GTF2A1,2:0.0183682501368;HBP1_HMGB_SSRP1_UBTF:0.0127848718508;PAX1,9:-0.011860514885;TFAP4:-0.0140780525398;SOX5:-0.0263739468292;POU6F1:-0.039217899805;PATZ1:-0.053930912869;SOX17:-0.0589761654464;TFAP2B:-0.0650736582644;MEF2{A,B,C,D}:-0.0975255862581;MTF1:-0.102442353372;ATF4:-0.125731103768;HIC1:-0.129189854776;ATF2:-0.138269999445;HAND1,2:-0.140052597106;ONECUT1,2:-0.144450518549;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.147755577261;SPI1:-0.175949580988;FOXQ1:-0.187332228581;PAX2:-0.197057583145;NR6A1:-0.208035261947;STAT5{A,B}:-0.214575424433;SREBF1,2:-0.214662579846;NFY{A,B,C}:-0.217431893704;RUNX1..3:-0.228002700295;RFX2..5_RFXANK_RFXAP:-0.230067873024;NKX2-2,8:-0.233218971026;ZNF423:-0.268533157885;TAL1_TCF{3,4,12}:-0.271291309543;ETS1,2:-0.273703826796;MTE{core}:-0.314060341997;ARID5B:-0.316830142526;NKX3-2:-0.348152854541;ESRRA:-0.366102630047;KLF4:-0.372099123306;TLX1..3_NFIC{dimer}:-0.380968270196;ZIC1..3:-0.388243541878;RFX1:-0.404437066783;HOX{A4,D4}:-0.405682537829;CEBPA,B_DDIT3:-0.406787249635;MYFfamily:-0.413382416267;ELK1,4_GABP{A,B1}:-0.420818845728;PITX1..3:-0.4392287487;REST:-0.459766516797;RXR{A,B,G}:-0.460746505642;PAX5:-0.48332964805;HNF4A_NR2F1,2:-0.486635075216;ADNP_IRX_SIX_ZHX:-0.505454157913;ZFP161:-0.512039048569;SPIB:-0.51398530524;TOPORS:-0.521989299132;MZF1:-0.527864946167;NR3C1:-0.573994361477;OCT4_SOX2{dimer}:-0.586311571098;HMGA1,2:-0.586856769736;FOX{F1,F2,J1}:-0.589910912956;ELF1,2,4:-0.59133828656;PAX3,7:-0.622238396813;HOX{A5,B5}:-0.638667340054;NANOG{mouse}:-0.643952035367;TGIF1:-0.64629868443;ZNF143:-0.653420187659;ZNF384:-0.659220234547;STAT1,3:-0.70131636348;LEF1_TCF7_TCF7L1,2:-0.702397439956;CUX2:-0.727544553757;GATA4:-0.743375286809;FOXP1:-0.756775493566;PRRX1,2:-0.768217971276;NKX2-3_NKX2-5:-0.768407357389;GFI1:-0.782603604599;PRDM1:-0.808919953077;RREB1:-0.823216563452;NHLH1,2:-0.827271365415;SOX2:-0.83399620701;GFI1B:-0.845640976741;TEF:-0.852823990695;NFE2L2:-0.856366553079;DBP:-0.85711201111;SOX{8,9,10}:-0.860830527636;RBPJ:-0.893499535625;MYB:-0.904261392626;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.947385194818;ZBTB16:-0.954734935171;IKZF2:-0.982334592421;DMAP1_NCOR{1,2}_SMARC:-0.989261621394;NFE2L1:-1.01306440469;NRF1:-1.01994017457;E2F1..5:-1.02150436251;PBX1:-1.0634877983;LMO2:-1.14234093442;PAX6:-1.15128333574;ALX1:-1.15481815007;TFDP1:-1.1630374165;AHR_ARNT_ARNT2:-1.166252533;YY1:-1.34540182023;LHX3,4:-1.41504282105;CRX:-1.47458430854;BREu{core}:-1.50720819004;CDX1,2,4:-1.51511484171;PDX1:-1.55321519772;NANOG:-1.58948056816;FOXA2:-1.62797963046;NR5A1,2:-1.74348262463;FOXD3:-1.75006326247;NFIX:-1.9153534572;NKX6-1,2:-2.05699652942;POU5F1:-2.64976984371
|xref=
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:12238-129G6;search_select_hide=table117:FF:12238-129G6
}}
}}

Latest revision as of 18:36, 4 June 2020

Name:chorionic membrane cells, donor1
Species:Human (Homo sapiens)
Library ID:CNhs12504
Sample type:primary cells
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1, 2, 3
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuechorion
dev stageNA
sexNA
ageNA
cell typeunclassifiable
cell lineNA
companyNA
collaborationHiroo Toyoda (Tokyo University of Pharm and life sciences)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot numberNA
catalog numberNA
sample typeNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00004697
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs12504 CAGE DRX008540 DRR009412
Accession ID Hg19

Library idBAMCTSS
CNhs12504 DRZ000837 DRZ002222
Accession ID Hg38

Library idBAMCTSS
CNhs12504 DRZ012187 DRZ013572
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.298
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.128
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0.357
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0.0645
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0.109
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes1.337
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0902
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.114
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle-0.138
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed0.39
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0.12
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0.12
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte0.546
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0.414
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0.414
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue1.385
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.24
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.12
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0.55
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.323
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.12
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80.107
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0.12
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40.886
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth0.292
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40.12
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.519
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.214
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left1.096
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0.126
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0.214
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.0678
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic1.037
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma1.037
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0.12
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0.622
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0.00914
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal1.606
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12504

Jaspar motifP-value
MA0002.20.191
MA0003.10.375
MA0004.10.584
MA0006.10.0215
MA0007.10.276
MA0009.10.69
MA0014.10.163
MA0017.10.644
MA0018.20.916
MA0019.10.0673
MA0024.10.0012
MA0025.10.845
MA0027.10.895
MA0028.10.0216
MA0029.10.241
MA0030.10.439
MA0031.10.0082
MA0035.20.119
MA0038.10.587
MA0039.20.0014
MA0040.10.988
MA0041.10.64
MA0042.10.858
MA0043.10.516
MA0046.10.331
MA0047.20.0477
MA0048.10.272
MA0050.10.221
MA0051.10.0575
MA0052.10.63
MA0055.10.967
MA0057.10.603
MA0058.10.604
MA0059.10.189
MA0060.10.185
MA0061.10.636
MA0062.22.65394e-4
MA0065.20.423
MA0066.10.254
MA0067.10.169
MA0068.10.00178
MA0069.10.845
MA0070.10.654
MA0071.10.758
MA0072.10.732
MA0073.10.767
MA0074.10.658
MA0076.10.00191
MA0077.10.678
MA0078.10.834
MA0079.20.462
MA0080.20.00278
MA0081.10.0535
MA0083.10.0227
MA0084.10.815
MA0087.10.984
MA0088.10.133
MA0090.14.85758e-8
MA0091.10.951
MA0092.10.157
MA0093.10.528
MA0099.23.39193e-14
MA0100.10.231
MA0101.10.904
MA0102.20.882
MA0103.10.00516
MA0104.20.0732
MA0105.10.957
MA0106.10.485
MA0107.10.397
MA0108.23.03981e-20
MA0111.10.903
MA0112.20.12
MA0113.10.0306
MA0114.10.213
MA0115.10.274
MA0116.10.597
MA0117.10.676
MA0119.10.889
MA0122.10.157
MA0124.10.607
MA0125.10.82
MA0131.10.645
MA0135.10.643
MA0136.16.35747e-4
MA0137.20.716
MA0138.20.862
MA0139.10.824
MA0140.10.81
MA0141.10.166
MA0142.10.918
MA0143.10.624
MA0144.10.0269
MA0145.10.0199
MA0146.10.204
MA0147.10.124
MA0148.10.211
MA0149.10.748
MA0150.10.198
MA0152.10.14
MA0153.10.916
MA0154.10.218
MA0155.10.491
MA0156.14.46787e-4
MA0157.10.0945
MA0159.10.238
MA0160.10.531
MA0162.10.385
MA0163.10.838
MA0164.10.575
MA0258.10.958
MA0259.10.637



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs12504

Novel motifP-value
10.868
100.793
1000.727
1010.24
1020.686
1030.323
1040.801
1050.188
1060.0023
1070.0101
1080.0511
1090.00939
110.795
1100.267
1110.225
1120.33
1139.02951e-4
1140.928
1150.87
1160.817
1170.269
1180.074
1190.451
120.629
1200.206
1210.673
1220.908
1230.0146
1240.0374
1250.878
1260.193
1270.395
1280.53
1290.764
130.21
1300.392
1310.389
1320.384
1330.114
1340.153
1350.632
1360.019
1370.457
1380.989
1390.842
140.747
1400.522
1410.377
1420.609
1430.462
1440.541
1450.685
1460.434
1470.858
1480.892
1490.392
150.915
1500.11
1510.188
1520.0102
1530.63
1540.722
1550.131
1560.874
1570.739
1580.174
1590.61
160.0381
1600.355
1610.846
1620.721
1630.101
1640.608
1650.589
1660.64
1670.161
1680.932
1690.0849
170.161
180.887
190.139
20.192
200.704
210.363
220.183
230.0536
240.946
250.8
260.451
270.785
280.94
290.368
30.616
300.107
310.702
320.0759
330.529
340.896
350.272
360.606
370.254
380.747
390.155
40.522
400.131
410.465
420.736
430.476
440.595
450.0352
460.859
470.393
480.979
490.794
50.855
500.324
510.917
520.127
530.295
540.953
550.36
560.647
570.714
580.852
590.354
60.996
600.144
610.376
620.954
630.611
640.77
650.409
660.406
670.688
680.536
690.308
70.371
700.203
710.971
720.287
730.015
740.463
750.364
760.734
770.0283
780.533
790.71
80.766
800.802
810.578
820.767
830.884
840.152
850.0472
860.943
870.655
880.566
890.577
90.677
900.448
910.715
920.906
930.825
940.894
950.144
960.727
970.143
980.95
990.98



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs12504


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000723 (somatic stem cell)
0000048 (multi fate stem cell)
0000548 (animal cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000219 (motile cell)
0000134 (mesenchymal cell)
0000349 (extraembryonic cell)
0000255 (eukaryotic cell)
0000034 (stem cell)
0002541 (chorionic membrane mesenchymal stem cell)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002384 (connective tissue)
0000479 (tissue)
0000064 (organ part)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0004923 (organ component layer)
0005631 (extraembryonic membrane)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0000476 (acellular anatomical structure)
0000478 (extraembryonic structure)
0000158 (membranous layer)
0003124 (chorion)
0000920 (egg chorion)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000038 (human chorionic membrane stem cell sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)

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