FFCP PHASE1:Mm9::chr18:37966043..37966107,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=93703,93706,93707,93708,93711,93716,93717,93723,93724 | |EntrezGene=93703,93706,93707,93708,93711,93716,93717,93723,93724 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1231 | |||
|TSSclassifier=NA | |||
|UniProt=Q91XX1,Q4KMN6 | |UniProt=Q91XX1,Q4KMN6 | ||
|association_with_transcript=0bp_to_ENSMUST00000076807,NM_033581,uc008ere.1,uc012bcb.1_5end | |association_with_transcript=0bp_to_ENSMUST00000076807,NM_033581,uc008ere.1,uc012bcb.1_5end | ||
|cluster_id=chr18:37966043..37966107,+ | |||
|description=CAGE_peak_1_at_Pcdhga11_5end,CAGE_peak_1_at_Pcdhga12_5end,CAGE_peak_1_at_Pcdhga3_5end,CAGE_peak_1_at_Pcdhga8_5end,CAGE_peak_1_at_Pcdhga9_5end,CAGE_peak_1_at_Pcdhgb6_5end,CAGE_peak_1_at_Pcdhgc3_5end,CAGE_peak_1_at_Pcdhgc4_5end,CAGE_peak_1_at_Pcdhgc5_5end | |description=CAGE_peak_1_at_Pcdhga11_5end,CAGE_peak_1_at_Pcdhga12_5end,CAGE_peak_1_at_Pcdhga3_5end,CAGE_peak_1_at_Pcdhga8_5end,CAGE_peak_1_at_Pcdhga9_5end,CAGE_peak_1_at_Pcdhgb6_5end,CAGE_peak_1_at_Pcdhgc3_5end,CAGE_peak_1_at_Pcdhgc4_5end,CAGE_peak_1_at_Pcdhgc5_5end | ||
|id=chr18:37966043..37966107,+ | |id=chr18:37966043..37966107,+ | ||
|ontology_enrichment_celltype=CL:0000055!1.85e-20!50;CL:0002319!6.02e-17!43;CL:0000221!1.07e-16!44;CL:0000133!1.07e-16!44;CL:0000393!2.94e-14!39;CL:0000211!2.94e-14!39;CL:0000540!1.10e-10!33;CL:0000047!1.10e-10!33;CL:0000031!1.10e-10!33;CL:0000404!1.10e-10!33;CL:0002321!4.35e-10!70;CL:0000220!4.35e-10!70;CL:0000333!8.22e-08!10;CL:0000095!8.22e-08!10;CL:0000243!8.22e-08!10;CL:0000123!8.22e-08!10;CL:0000125!8.22e-08!10;CL:0000030!8.22e-08!10;CL:0000339!8.22e-08!10 | |ontology_enrichment_celltype=CL:0000055!1.85e-20!50;CL:0002319!6.02e-17!43;CL:0000221!1.07e-16!44;CL:0000133!1.07e-16!44;CL:0000393!2.94e-14!39;CL:0000211!2.94e-14!39;CL:0000540!1.10e-10!33;CL:0000047!1.10e-10!33;CL:0000031!1.10e-10!33;CL:0000404!1.10e-10!33;CL:0002321!4.35e-10!70;CL:0000220!4.35e-10!70;CL:0000333!8.22e-08!10;CL:0000095!8.22e-08!10;CL:0000243!8.22e-08!10;CL:0000123!8.22e-08!10;CL:0000125!8.22e-08!10;CL:0000030!8.22e-08!10;CL:0000339!8.22e-08!10 | ||
|ontology_enrichment_celltype_v019_2=CL:0002319,5.93e-17,43;CL:0000221,1.05e-16,44;CL:0000133,1.05e-16,44;CL:0000393,2.90e-14,39;CL:0000211,2.90e-14,39;CL:0000540,1.09e-10,33;CL:0000047,1.09e-10,33;CL:0000031,1.09e-10,33;CL:0000404,1.09e-10,33;CL:0002321,4.56e-10,70;CL:0000333,8.17e-08,10;CL:0000095,8.17e-08,10;CL:0000243,8.17e-08,10;CL:0000123,8.17e-08,10;CL:0000125,8.17e-08,10;CL:0000030,8.17e-08,10;CL:0000339,8.17e-08,10 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!6.62e-21!75;UBERON:0001016!6.62e-21!75;UBERON:0001017!1.06e-19!73;UBERON:0005743!1.06e-19!73;UBERON:0004121!5.89e-17!102;UBERON:0000924!5.89e-17!102;UBERON:0006601!5.89e-17!102;UBERON:0000025!2.02e-11!114;UBERON:0002346!2.58e-11!71;UBERON:0003075!2.58e-11!71;UBERON:0007284!2.58e-11!71;UBERON:0001049!6.38e-11!52;UBERON:0005068!6.38e-11!52;UBERON:0006241!6.38e-11!52;UBERON:0007135!6.38e-11!52;UBERON:0004111!2.38e-10!122;UBERON:0000955!9.76e-10!50;UBERON:0006238!9.76e-10!50;UBERON:0002616!1.83e-09!49;UBERON:0000033!1.66e-08!63;UBERON:0003080!7.84e-08!40;UBERON:0002780!8.00e-08!39;UBERON:0001890!8.00e-08!39;UBERON:0006240!8.00e-08!39;UBERON:0000010!1.30e-07!11;UBERON:0002048!1.58e-07!14;UBERON:0000117!1.58e-07!14;UBERON:0000171!1.58e-07!14;UBERON:0000170!1.58e-07!14;UBERON:0005597!1.58e-07!14;UBERON:0000118!1.58e-07!14;UBERON:0000468!2.40e-07!333;UBERON:0002020!4.51e-07!34;UBERON:0003056!5.77e-07!49 | |ontology_enrichment_uberon=UBERON:0000073!6.62e-21!75;UBERON:0001016!6.62e-21!75;UBERON:0001017!1.06e-19!73;UBERON:0005743!1.06e-19!73;UBERON:0004121!5.89e-17!102;UBERON:0000924!5.89e-17!102;UBERON:0006601!5.89e-17!102;UBERON:0000025!2.02e-11!114;UBERON:0002346!2.58e-11!71;UBERON:0003075!2.58e-11!71;UBERON:0007284!2.58e-11!71;UBERON:0001049!6.38e-11!52;UBERON:0005068!6.38e-11!52;UBERON:0006241!6.38e-11!52;UBERON:0007135!6.38e-11!52;UBERON:0004111!2.38e-10!122;UBERON:0000955!9.76e-10!50;UBERON:0006238!9.76e-10!50;UBERON:0002616!1.83e-09!49;UBERON:0000033!1.66e-08!63;UBERON:0003080!7.84e-08!40;UBERON:0002780!8.00e-08!39;UBERON:0001890!8.00e-08!39;UBERON:0006240!8.00e-08!39;UBERON:0000010!1.30e-07!11;UBERON:0002048!1.58e-07!14;UBERON:0000117!1.58e-07!14;UBERON:0000171!1.58e-07!14;UBERON:0000170!1.58e-07!14;UBERON:0005597!1.58e-07!14;UBERON:0000118!1.58e-07!14;UBERON:0000468!2.40e-07!333;UBERON:0002020!4.51e-07!34;UBERON:0003056!5.77e-07!49 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,6.50e-21,75;UBERON:0001017,1.04e-19,73;UBERON:0004121,8.49e-17,95;UBERON:0000924,8.49e-17,95;UBERON:0006601,8.49e-17,95;UBERON:0010314,4.27e-13,92;UBERON:0000025,2.00e-11,114;UBERON:0002346,2.67e-11,64;UBERON:0003075,2.67e-11,64;UBERON:0007284,2.67e-11,64;UBERON:0000073,5.40e-11,54;UBERON:0001049,6.32e-11,52;UBERON:0005068,6.32e-11,52;UBERON:0006241,6.32e-11,52;UBERON:0007135,6.32e-11,52;UBERON:0004111,2.36e-10,122;UBERON:0010371,2.79e-10,73;UBERON:0000955,1.10e-09,47;UBERON:0006238,1.10e-09,47;UBERON:0002616,2.07e-09,46;UBERON:0003080,7.79e-08,40;UBERON:0002780,7.95e-08,39;UBERON:0001890,7.95e-08,39;UBERON:0006240,7.95e-08,39;UBERON:0000010,1.29e-07,11;UBERON:0002048,1.57e-07,14;UBERON:0000117,1.57e-07,14;UBERON:0000171,1.57e-07,14;UBERON:0000170,1.57e-07,14;UBERON:0005597,1.57e-07,14;UBERON:0000118,1.57e-07,14;UBERON:0002020,4.48e-07,34;UBERON:0003056,5.74e-07,49;UBERON:0005157,7.99e-07,20 | |||
|phase1_expression=60.3761153585073,1.39590163055744,0.909998478779072,0,0.500895729946347,5.70789524500425,5.60670337429262,1.03298658753261,2.81577444303333,3.04283884218592,0.68487187290202,0.319088635981346,0.342401459862411,0.437102012094987,0.999329285446988,0.404950534779652,0,0,0.274228867211478,0.42438965179803,28.6595887809105,0.992909512008853,0.522399578277871,2.3998863419011,2.75291137280604,0.57423196411502,1.7230479846363,1.72376986148711,2.66032787238923,2.01624103807945,3.76941868114018,0,0,0,3.17736781726402,1.82858109894342,1.42918549383658,0,0,0.523523743973798,0.588231488031014,0,0,237.189605065988,240.364703921469,145.18548095989,387.283715452279,226.964187792045,262.524988367694,209.206571403929,154.964968739276,218.503897834757,0.167782606057736,2.17608642603403,2.68875039313971,179.567086353091,160.745259805643,172.750150912943,56.2439761189682,70.8847912224524,51.9741750875067,230.075437274941,184.084022795006,38.6956878431002,38.565788140112,39.7868864369816,346.637327869794,473.356952156155,60.554733588151,80.733551122351,62.2561885600091,74.8405579137965,79.7335432835325,57.8156572294583,68.6253572490572,60.6684399162614,37.4393995397922,57.5869894764197,47.4644187761792,73.5925485534482,74.9283801103735,63.030517837368,50.5321228192499,36.5795696520592,53.6321849696604,67.1753174879962,55.6673271924492,62.630213797301,135.0955289064,173.210015764752,60.291813649949,37.858650587181,1.3599426674155,1.07940638327563,3.89865850468601,1.79210754838934,16.993774835942,156.284605804079,120.280920131128,125.435548951171,42.3938693527808,151.425243348895,155.431196221054,156.434674693733,16.0203370348298,13.6814327356553,17.6933555755174,12.2176751299394,9.32176381129818,61.6034877119023,47.8819501874535,43.8430288769483,35.284171080177,31.0488639538402,35.86455567639,69.8706247792996,12.6069433544531,100.785751773178,12.3845477272982,58.0742991311199,31.3594956213759,42.6690222758995,14.9113408974498,102.18049815703,113.101221679266,8.9409969323007,0.11981512450592,0,1.39777249780371,46.2853075760902,44.3775584734068,69.8638197747526,43.9775530086459,48.5859368927628,55.4794078974025,50.2947915510049,59.6778672162853,35.8292075357068,8.33985102831127,23.3590460033986,42.8096257347295,39.0833577536904,42.8547868936731,41.4438249048216,42.1826294738233,45.224143260552,47.6004760763422,37.7706921278963,66.6105098162483,73.3731591051139,78.6501525012851,65.5395239958449,65.6191508172411,58.506363975724,60.9115123767513,45.7778813682534,1.40442637462647,0.51469581422943,2.55747149456033,60.273599807831,50.1885768359546,51.1376254549282,60.1331628386434,51.3554644860724,51.6794828172717,40.460906386571,55.5325940897212,33.9787146288463,41.9627617279375,38.5793540585874,38.2644781056439,35.3803969569304,41.7145219052996,36.7725587403419,49.8387178096982,80.3685022682211,1.98251269790279,6.87571473325215,45.0038208629344,56.2012745902261,44.3304066948001,23.5969723809311,30.2434139629024,24.5391057685201,15.6594590309689,19.4344766574333,20.3581519128218,19.8956472041151,27.2949721966768,15.2799299471218,14.9135254413539,14.3381716743144,47.4169752382704,42.2719496655997,42.8289395557706,41.7485222082894,42.8634996640453,38.9955158590171,47.4906393803172,20.8130308651239,20.2528358915373,18.8797660800355,9.78293669387591,13.8481437744358,13.7591296579242,6.52100125916076,9.73728582664814,12.3000351473733,12.731292589071,14.3848068725405,14.4300351829781,11.8061407670875,18.6898668485561,26.4220072844637,17.4741096944154,14.1444171650383,10.4050499842709,8.20153986317724,76.1183143486411,64.9955542372763,85.8825425849476,81.9868764294159,84.7231796321493,96.1485917716022,101.168547376556,81.1755975088443,156.374062953341,155.025282754142,155.946763747022,98.4818521441585,104.301729047001,94.6004843123086,1.50791283939272,2.17562273527484,16.2282210096282,24.5583704211212,39.0137933670334,38.5626448888348,101.475731188162,38.6280518622691,118.00007406168,120.255133243365,161.998395095065,159.1532194364,177.124945895503,165.882847042256,174.068601720205,141.744091086986,162.858564513968,62.0150140694088,52.0920112714346,79.5953248392631,62.8743663104804,46.521574678255,7.96470830039777,29.6192376109077,26.9067965698628,16.0314317792513,32.1879063240042,28.2840336108413,26.6181141963268,25.0838273339479,25.3113138653152,21.1744627816997,11.5960469432499,15.470331487228,44.2571487479924,52.21771726908,67.9133089859461,58.2996735285931,72.3548153260476,84.7251883609835,67.6296474674717,74.2894475839622,26.0485595950719,17.7938939525609,6.61585194164886,34.6261131177108,46.178826035029,44.510938596979,39.2735011770319,27.7398120569154,20.9866202373493,45.6146242945854,3.58828849675491,56.1372280859965,30.3719024886327,9.04168593622517,4.51090951479383,4.34678529092393,0.509935289981566,1.6794174278839,1.10559979043539,9.54670618015114,49.8229189890288,45.5435606364141,36.5058051977688,37.2177166905754,30.3523963607187,31.4233927076632,39.7563122038866,26.699106082371,14.387262035389,16.1548221402601,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| ||
|short_description=p1@Pcdhga11,p1@Pcdhga12,p1@Pcdhga3,p1@Pcdhga8,p1@Pcdhga9,p1@Pcdhgb6,p1@Pcdhgc3,p1@Pcdhgc4,p1@Pcdhgc5 | |short_description=p1@Pcdhga11,p1@Pcdhga12,p1@Pcdhga3,p1@Pcdhga8,p1@Pcdhga9,p1@Pcdhgb6,p1@Pcdhgc3,p1@Pcdhgc4,p1@Pcdhgc5 | ||
}} | }} |
Latest revision as of 05:57, 27 September 2015
Short description: | p1@Pcdhga11, p1@Pcdhga12, p1@Pcdhga3, p1@Pcdhga8, p1@Pcdhga9, p1@Pcdhgb6, p1@Pcdhgc3, p1@Pcdhgc4, p1@Pcdhgc5 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Pcdhga11_5end, CAGE_peak_1_at_Pcdhga12_5end, CAGE_peak_1_at_Pcdhga3_5end, CAGE_peak_1_at_Pcdhga8_5end, CAGE_peak_1_at_Pcdhga9_5end, CAGE_peak_1_at_Pcdhgb6_5end, CAGE_peak_1_at_Pcdhgc3_5end, CAGE_peak_1_at_Pcdhgc4_5end, CAGE_peak_1_at_Pcdhgc5_5end |
Coexpression cluster: | MCL_coexpression_mm9:1231 |
Association with transcript: | 0bp_to_ENSMUST00000076807, NM_033581, uc008ere.1, uc012bcb.1_5end |
EntrezGene: | 93703,93706,93707,93708,93711,93716,93717,93723,93724 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 5.93e-17 | 43 |
ectodermal cell | 1.05e-16 | 44 |
neurectodermal cell | 1.05e-16 | 44 |
electrically responsive cell | 2.90e-14 | 39 |
electrically active cell | 2.90e-14 | 39 |
neuron | 1.09e-10 | 33 |
neuronal stem cell | 1.09e-10 | 33 |
neuroblast | 1.09e-10 | 33 |
electrically signaling cell | 1.09e-10 | 33 |
embryonic cell | 4.56e-10 | 70 |
migratory neural crest cell | 8.17e-08 | 10 |
neuron associated cell | 8.17e-08 | 10 |
glial cell (sensu Vertebrata) | 8.17e-08 | 10 |
neuron associated cell (sensu Vertebrata) | 8.17e-08 | 10 |
glial cell | 8.17e-08 | 10 |
glioblast | 8.17e-08 | 10 |
glioblast (sensu Vertebrata) | 8.17e-08 | 10 |
Ontology term | p-value | n |
---|---|---|
nervous system | 6.50e-21 | 75 |
central nervous system | 1.04e-19 | 73 |
ectoderm-derived structure | 8.49e-17 | 95 |
ectoderm | 8.49e-17 | 95 |
presumptive ectoderm | 8.49e-17 | 95 |
structure with developmental contribution from neural crest | 4.27e-13 | 92 |
tube | 2.00e-11 | 114 |
neurectoderm | 2.67e-11 | 64 |
neural plate | 2.67e-11 | 64 |
presumptive neural plate | 2.67e-11 | 64 |
regional part of nervous system | 5.40e-11 | 54 |
neural tube | 6.32e-11 | 52 |
neural rod | 6.32e-11 | 52 |
future spinal cord | 6.32e-11 | 52 |
neural keel | 6.32e-11 | 52 |
anatomical conduit | 2.36e-10 | 122 |
ecto-epithelium | 2.79e-10 | 73 |
brain | 1.10e-09 | 47 |
future brain | 1.10e-09 | 47 |
regional part of brain | 2.07e-09 | 46 |
anterior neural tube | 7.79e-08 | 40 |
regional part of forebrain | 7.95e-08 | 39 |
forebrain | 7.95e-08 | 39 |
future forebrain | 7.95e-08 | 39 |
peripheral nervous system | 1.29e-07 | 11 |
lung | 1.57e-07 | 14 |
respiratory tube | 1.57e-07 | 14 |
respiration organ | 1.57e-07 | 14 |
pair of lungs | 1.57e-07 | 14 |
lung primordium | 1.57e-07 | 14 |
lung bud | 1.57e-07 | 14 |
gray matter | 4.48e-07 | 34 |
pre-chordal neural plate | 5.74e-07 | 49 |
epithelial fold | 7.99e-07 | 20 |