FFCP PHASE1:Mm9::chr4:125939626..125939646,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=27096 | |EntrezGene=27096 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=52 | |||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENSMUST00000126786_5end | |association_with_transcript=0bp_to_ENSMUST00000126786_5end | ||
|cluster_id=chr4:125939626..125939646,+ | |||
|description=CAGE_peak_1_at_Trappc3_5end | |description=CAGE_peak_1_at_Trappc3_5end | ||
|id=chr4:125939626..125939646,+ | |id=chr4:125939626..125939646,+ | ||
|ontology_enrichment_celltype=CL:0002321!2.63e-19!70;CL:0000220!2.63e-19!70;CL:0000055!4.64e-17!50;CL:0000221!1.47e-16!44;CL:0000133!1.47e-16!44;CL:0002319!3.36e-16!43;CL:0002371!2.42e-15!118;CL:0000548!1.37e-14!115;CL:0000004!1.37e-14!115;CL:0000255!1.37e-14!115;CL:0000144!3.34e-14!121;CL:0000012!3.34e-14!121;CL:0000117!4.85e-12!23;CL:0000337!4.85e-12!23;CL:0000393!9.11e-11!39;CL:0000211!9.11e-11!39;CL:0000540!2.70e-10!33;CL:0000047!2.70e-10!33;CL:0000031!2.70e-10!33;CL:0000404!2.70e-10!33;CL:0000333!1.99e-07!10;CL:0000095!1.99e-07!10;CL:0000243!1.99e-07!10;CL:0000123!1.99e-07!10;CL:0000125!1.99e-07!10;CL:0000030!1.99e-07!10;CL:0000339!1.99e-07!10 | |ontology_enrichment_celltype=CL:0002321!2.63e-19!70;CL:0000220!2.63e-19!70;CL:0000055!4.64e-17!50;CL:0000221!1.47e-16!44;CL:0000133!1.47e-16!44;CL:0002319!3.36e-16!43;CL:0002371!2.42e-15!118;CL:0000548!1.37e-14!115;CL:0000004!1.37e-14!115;CL:0000255!1.37e-14!115;CL:0000144!3.34e-14!121;CL:0000012!3.34e-14!121;CL:0000117!4.85e-12!23;CL:0000337!4.85e-12!23;CL:0000393!9.11e-11!39;CL:0000211!9.11e-11!39;CL:0000540!2.70e-10!33;CL:0000047!2.70e-10!33;CL:0000031!2.70e-10!33;CL:0000404!2.70e-10!33;CL:0000333!1.99e-07!10;CL:0000095!1.99e-07!10;CL:0000243!1.99e-07!10;CL:0000123!1.99e-07!10;CL:0000125!1.99e-07!10;CL:0000030!1.99e-07!10;CL:0000339!1.99e-07!10 | ||
|ontology_enrichment_celltype_v019_2=CL:0002321,2.63e-19,70;CL:0000221,1.47e-16,44;CL:0000133,1.47e-16,44;CL:0002319,3.36e-16,43;CL:0000117,4.85e-12,23;CL:0000337,4.85e-12,23;CL:0000393,9.11e-11,39;CL:0000211,9.11e-11,39;CL:0000540,2.70e-10,33;CL:0000047,2.70e-10,33;CL:0000031,2.70e-10,33;CL:0000404,2.70e-10,33;CL:0000333,1.99e-07,10;CL:0000095,1.99e-07,10;CL:0000243,1.99e-07,10;CL:0000123,1.99e-07,10;CL:0000125,1.99e-07,10;CL:0000030,1.99e-07,10;CL:0000339,1.99e-07,10 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!7.56e-23!75;UBERON:0001016!7.56e-23!75;UBERON:0001017!8.70e-22!73;UBERON:0005743!8.70e-22!73;UBERON:0001049!9.61e-18!52;UBERON:0005068!9.61e-18!52;UBERON:0006241!9.61e-18!52;UBERON:0007135!9.61e-18!52;UBERON:0004121!1.19e-16!102;UBERON:0000924!1.19e-16!102;UBERON:0006601!1.19e-16!102;UBERON:0002616!1.39e-15!49;UBERON:0000955!3.40e-15!50;UBERON:0006238!3.40e-15!50;UBERON:0002020!7.98e-14!34;UBERON:0002346!1.18e-13!71;UBERON:0003075!1.18e-13!71;UBERON:0007284!1.18e-13!71;UBERON:0000033!2.32e-12!63;UBERON:0003080!4.81e-12!40;UBERON:0002780!6.09e-12!39;UBERON:0001890!6.09e-12!39;UBERON:0006240!6.09e-12!39;UBERON:0002791!3.91e-11!29;UBERON:0003528!3.91e-11!29;UBERON:0001893!3.91e-11!29;UBERON:0003056!1.26e-09!49;UBERON:0000956!1.31e-07!21;UBERON:0001869!1.31e-07!21;UBERON:0000203!1.31e-07!21;UBERON:0003076!9.77e-07!12;UBERON:0003057!9.77e-07!12 | |ontology_enrichment_uberon=UBERON:0000073!7.56e-23!75;UBERON:0001016!7.56e-23!75;UBERON:0001017!8.70e-22!73;UBERON:0005743!8.70e-22!73;UBERON:0001049!9.61e-18!52;UBERON:0005068!9.61e-18!52;UBERON:0006241!9.61e-18!52;UBERON:0007135!9.61e-18!52;UBERON:0004121!1.19e-16!102;UBERON:0000924!1.19e-16!102;UBERON:0006601!1.19e-16!102;UBERON:0002616!1.39e-15!49;UBERON:0000955!3.40e-15!50;UBERON:0006238!3.40e-15!50;UBERON:0002020!7.98e-14!34;UBERON:0002346!1.18e-13!71;UBERON:0003075!1.18e-13!71;UBERON:0007284!1.18e-13!71;UBERON:0000033!2.32e-12!63;UBERON:0003080!4.81e-12!40;UBERON:0002780!6.09e-12!39;UBERON:0001890!6.09e-12!39;UBERON:0006240!6.09e-12!39;UBERON:0002791!3.91e-11!29;UBERON:0003528!3.91e-11!29;UBERON:0001893!3.91e-11!29;UBERON:0003056!1.26e-09!49;UBERON:0000956!1.31e-07!21;UBERON:0001869!1.31e-07!21;UBERON:0000203!1.31e-07!21;UBERON:0003076!9.77e-07!12;UBERON:0003057!9.77e-07!12 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,7.56e-23,75;UBERON:0001017,8.70e-22,73;UBERON:0000073,2.19e-18,54;UBERON:0001049,9.61e-18,52;UBERON:0005068,9.61e-18,52;UBERON:0006241,9.61e-18,52;UBERON:0007135,9.61e-18,52;UBERON:0004121,4.82e-17,95;UBERON:0000924,4.82e-17,95;UBERON:0006601,4.82e-17,95;UBERON:0002616,1.06e-14,46;UBERON:0002346,2.48e-14,64;UBERON:0003075,2.48e-14,64;UBERON:0007284,2.48e-14,64;UBERON:0000955,2.59e-14,47;UBERON:0006238,2.59e-14,47;UBERON:0002020,7.98e-14,34;UBERON:0010371,2.89e-12,73;UBERON:0003080,4.81e-12,40;UBERON:0002780,6.09e-12,39;UBERON:0001890,6.09e-12,39;UBERON:0006240,6.09e-12,39;UBERON:0003528,3.91e-11,29;UBERON:0002791,3.91e-11,29;UBERON:0001893,3.91e-11,29;UBERON:0003056,1.26e-09,49;UBERON:0010314,3.10e-09,92;UBERON:0000956,1.31e-07,21;UBERON:0001869,1.31e-07,21;UBERON:0000203,1.31e-07,21;UBERON:0003076,9.77e-07,12;UBERON:0003057,9.77e-07,12 | |||
|phase1_expression=46.2830168132855,58.976843891052,55.0549079661339,42.647453794263,33.0591181764589,29.5467518564926,42.2838879477901,23.1130748960421,9.714421828465,14.5120006319636,20.7173741552861,17.9487357739507,24.3105036502312,22.6418842265203,23.9839028507277,18.0202987976945,24.4846657344851,29.8111746263535,26.4630856859076,32.2536135366503,21.2608225377674,28.2979210922523,45.4487633101748,45.4378480733275,42.2113077163593,56.274732483272,48.6761055659754,48.0500848889533,37.624637052362,34.5281277771105,52.9935920466178,12.7006134691926,14.7615549020297,0,22.8192779603507,29.0910629377362,21.8461211200735,41.8531630736908,35.9414258480948,31.9349483824017,23.5292595212406,28.6879103682547,31.558172947025,26.4383317748712,30.7172101595129,28.816840089384,100.928483420897,67.369773321558,85.0185527182406,84.5770060973133,53.3348266392631,79.0639104007344,31.3753473327967,23.211588544363,22.1821907434026,43.734104126111,40.1146815914259,43.3164557513052,55.4347102755298,53.4280889064753,71.6229485961982,60.3143267083055,71.1435836888911,80.0910748380445,66.2540462919873,94.4938552878313,61.418022656273,86.8333370026713,43.2385683326352,47.3870843544234,43.9579169224388,61.129310662414,70.0153274816615,46.0565405048227,48.6894992772641,51.4762520501612,36.3382407297983,39.8384494825786,43.1634358450044,56.7111037239834,61.0222582828072,51.0495103145625,60.0243447852969,50.6486349028512,38.657956687533,48.3190880176815,50.5419466836815,47.159059793801,46.1172517399091,47.912369107702,44.9289957487601,44.7420416030321,23.1190253460635,31.3027851149934,42.8852435515462,28.2256938871321,19.9431076587088,35.7903677413921,47.540838842325,44.5207863883029,42.8163996121109,50.047326191584,142.690934235722,127.9920065676,37.8859321769625,39.2707791486403,28.3093689208279,26.8332117339791,15.2773351351831,30.8759649254836,23.9409750937267,27.0974275697806,34.1310935938967,32.2546450782612,26.3398703983979,30.4113151017815,49.4389935468748,22.991297750266,17.6922110389975,19.2502551437417,14.7963817368464,24.2437626567611,26.0948465705371,38.3542844085127,42.9365748967583,27.3339049073193,20.967646788536,35.9941638596045,21.8560790565671,32.3547781114417,38.4300506367646,43.2250971268254,29.3763101124947,44.2387741181472,40.7264567336738,44.4541060805656,21.9973025916683,23.7617313865278,37.4029682481839,31.3558365270846,25.2433659347645,31.2666862029523,26.1090088217756,25.7705238499073,23.2684827097541,29.85049682637,27.9231139187992,26.1290404446406,30.3950870035308,28.3659120251729,27.9762287420679,35.071317188412,22.2437799380478,22.984642990463,27.5748062786644,30.4522428232295,28.7907406798426,31.65379257511,27.8480229407681,20.2983257084792,21.5763975182609,24.308378297237,23.9112182941062,23.8084720414359,22.9857998202194,25.5787339225449,18.7791380979733,23.0027724463324,26.3295759861569,26.2667942526552,26.1041566737655,26.6083977114105,26.3460138349261,27.9149351021573,31.1229123874908,43.7344602611959,31.7202031664446,24.3294521330461,22.82184280727,23.9203772016252,22.1652033474001,25.6138076271645,27.5748774367639,32.7188076913602,30.8443890003933,45.127513594379,40.7163038256437,43.1735544329297,44.4518118631594,23.3693046250098,30.6916030822066,28.2780608021201,30.5365320534461,24.449181698482,15.7790829942313,30.7513505046424,25.7956807932942,28.4751428754693,30.732957042389,30.9981310757165,35.4817124921507,42.2018300612558,35.5743152504579,14.6823693030163,18.2799865455279,15.5154857545549,15.8230894683032,16.6412240229168,18.3330613282622,21.0018180339092,16.6999283578286,19.7684217495419,23.0029130443767,21.9563159124417,20.594486425561,26.0156244285525,21.3482922091076,33.7710464954357,26.2349530036579,29.5606602361956,23.9558515369778,25.292017780503,26.5199980566007,27.8060387353414,29.5174114698657,29.2700471786698,27.4285150744772,28.1260155853944,28.8613131270052,30.3147132224115,29.8745018627999,30.6656004192805,57.3006878969235,36.9855864996723,23.6046851049137,28.4214848693874,43.8303110666672,43.7199590988918,26.8853310417748,17.6729649043061,24.9251493338843,31.2350995437311,28.2204651029967,28.1983181584011,26.7358408898873,28.5907296096721,36.4329631507405,30.3946092227764,29.2512955680427,26.66966926301,23.9878744001974,31.5176118491042,28.1794439681687,21.9410263553472,15.9294166007955,22.5785991624133,23.8835610002153,23.0098197302196,24.2147552162234,27.6691633149535,29.4608254211772,25.0838273339479,19.6073558111597,25.2829406348653,16.8669773719998,11.3449097573006,29.6182457005796,27.1892251987278,31.5635188429921,33.0079033948652,31.3892213546824,32.2847559859748,35.0489413882518,36.5357938937519,25.3445444708807,35.1641237633942,33.9613733004641,28.3604355059346,23.4123418709063,22.3157822234177,23.9938411446304,24.2928531622691,31.188449519394,38.0121869121545,15.036637510211,22.289781740028,18.5194527369712,14.3160027323565,12.4391747226133,16.7008066440762,24.9868292090967,24.0716497996692,22.8029956777299,22.9120948323627,22.7761915378417,19.3153493770506,26.24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| ||
|short_description=p1@Trappc3 | |short_description=p1@Trappc3 | ||
}} | }} |
Latest revision as of 08:23, 26 September 2015
Short description: | p1@Trappc3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Trappc3_5end |
Coexpression cluster: | MCL_coexpression_mm9:52 |
Association with transcript: | 0bp_to_ENSMUST00000126786_5end |
EntrezGene: | Trappc3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic cell | 2.63e-19 | 70 |
ectodermal cell | 1.47e-16 | 44 |
neurectodermal cell | 1.47e-16 | 44 |
neural cell | 3.36e-16 | 43 |
CNS neuron (sensu Vertebrata) | 4.85e-12 | 23 |
neuroblast (sensu Vertebrata) | 4.85e-12 | 23 |
electrically responsive cell | 9.11e-11 | 39 |
electrically active cell | 9.11e-11 | 39 |
neuron | 2.70e-10 | 33 |
neuronal stem cell | 2.70e-10 | 33 |
neuroblast | 2.70e-10 | 33 |
electrically signaling cell | 2.70e-10 | 33 |
migratory neural crest cell | 1.99e-07 | 10 |
neuron associated cell | 1.99e-07 | 10 |
glial cell (sensu Vertebrata) | 1.99e-07 | 10 |
neuron associated cell (sensu Vertebrata) | 1.99e-07 | 10 |
glial cell | 1.99e-07 | 10 |
glioblast | 1.99e-07 | 10 |
glioblast (sensu Vertebrata) | 1.99e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
nervous system | 7.56e-23 | 75 |
central nervous system | 8.70e-22 | 73 |
regional part of nervous system | 2.19e-18 | 54 |
neural tube | 9.61e-18 | 52 |
neural rod | 9.61e-18 | 52 |
future spinal cord | 9.61e-18 | 52 |
neural keel | 9.61e-18 | 52 |
ectoderm-derived structure | 4.82e-17 | 95 |
ectoderm | 4.82e-17 | 95 |
presumptive ectoderm | 4.82e-17 | 95 |
regional part of brain | 1.06e-14 | 46 |
neurectoderm | 2.48e-14 | 64 |
neural plate | 2.48e-14 | 64 |
presumptive neural plate | 2.48e-14 | 64 |
brain | 2.59e-14 | 47 |
future brain | 2.59e-14 | 47 |
gray matter | 7.98e-14 | 34 |
ecto-epithelium | 2.89e-12 | 73 |
anterior neural tube | 4.81e-12 | 40 |
regional part of forebrain | 6.09e-12 | 39 |
forebrain | 6.09e-12 | 39 |
future forebrain | 6.09e-12 | 39 |
brain grey matter | 3.91e-11 | 29 |
regional part of telencephalon | 3.91e-11 | 29 |
telencephalon | 3.91e-11 | 29 |
pre-chordal neural plate | 1.26e-09 | 49 |
structure with developmental contribution from neural crest | 3.10e-09 | 92 |
cerebral cortex | 1.31e-07 | 21 |
cerebral hemisphere | 1.31e-07 | 21 |
pallium | 1.31e-07 | 21 |
posterior neural tube | 9.77e-07 | 12 |
chordal neural plate | 9.77e-07 | 12 |