FFCP PHASE1:Mm9::chrX:139953119..139953142,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=18481 | |EntrezGene=18481 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=3743 | |||
|TSSclassifier=NA | |||
|UniProt=Q61036,A3KGC0 | |UniProt=Q61036,A3KGC0 | ||
|association_with_transcript=0bp_to_ENSMUST00000033640,ENSMUST00000070348,NM_001195048,uc009umg.2_5end | |association_with_transcript=0bp_to_ENSMUST00000033640,ENSMUST00000070348,NM_001195048,uc009umg.2_5end | ||
|cluster_id=chrX:139953119..139953142,+ | |||
|description=CAGE_peak_4_at_Pak3_5end | |description=CAGE_peak_4_at_Pak3_5end | ||
|id=chrX:139953119..139953142,+ | |id=chrX:139953119..139953142,+ | ||
|ontology_enrichment_celltype=CL:0000393!7.41e-13!39;CL:0000211!7.41e-13!39;CL:0000117!2.56e-12!23;CL:0000337!2.56e-12!23;CL:0000540!1.30e-11!33;CL:0000047!1.30e-11!33;CL:0000031!1.30e-11!33;CL:0000404!1.30e-11!33;CL:0000055!1.23e-09!50;CL:0000221!3.32e-09!44;CL:0000133!3.32e-09!44;CL:0002319!6.51e-09!43 | |ontology_enrichment_celltype=CL:0000393!7.41e-13!39;CL:0000211!7.41e-13!39;CL:0000117!2.56e-12!23;CL:0000337!2.56e-12!23;CL:0000540!1.30e-11!33;CL:0000047!1.30e-11!33;CL:0000031!1.30e-11!33;CL:0000404!1.30e-11!33;CL:0000055!1.23e-09!50;CL:0000221!3.32e-09!44;CL:0000133!3.32e-09!44;CL:0002319!6.51e-09!43 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.68e-15,23;CL:0000337,2.68e-15,23;CL:0000393,4.13e-12,39;CL:0000211,4.13e-12,39;CL:0000540,5.15e-11,33;CL:0000047,5.15e-11,33;CL:0000031,5.15e-11,33;CL:0000404,5.15e-11,33;CL:0000221,3.40e-07,44;CL:0000133,3.40e-07,44;CL:0002319,7.12e-07,43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!3.36e-28!102;UBERON:0000924!3.36e-28!102;UBERON:0006601!3.36e-28!102;UBERON:0000033!5.18e-25!63;UBERON:0002346!1.89e-24!71;UBERON:0003075!1.89e-24!71;UBERON:0007284!1.89e-24!71;UBERON:0000073!1.19e-23!75;UBERON:0001016!1.19e-23!75;UBERON:0001017!1.52e-23!73;UBERON:0005743!1.52e-23!73;UBERON:0003056!1.38e-22!49;UBERON:0001049!1.41e-21!52;UBERON:0005068!1.41e-21!52;UBERON:0006241!1.41e-21!52;UBERON:0007135!1.41e-21!52;UBERON:0000955!6.10e-21!50;UBERON:0006238!6.10e-21!50;UBERON:0002616!3.52e-20!49;UBERON:0002020!8.76e-19!34;UBERON:0003080!1.19e-18!40;UBERON:0002780!5.52e-18!39;UBERON:0001890!5.52e-18!39;UBERON:0006240!5.52e-18!39;UBERON:0002791!2.91e-16!29;UBERON:0003528!2.91e-16!29;UBERON:0001893!2.91e-16!29;UBERON:0007811!6.72e-12!86;UBERON:0000956!7.96e-12!21;UBERON:0001869!7.96e-12!21;UBERON:0000203!7.96e-12!21;UBERON:0000153!1.09e-10!94;UBERON:0002619!5.19e-10!17;UBERON:0002021!6.74e-08!10;UBERON:0000411!6.74e-08!10;UBERON:0001950!6.74e-08!10 | |ontology_enrichment_uberon=UBERON:0004121!3.36e-28!102;UBERON:0000924!3.36e-28!102;UBERON:0006601!3.36e-28!102;UBERON:0000033!5.18e-25!63;UBERON:0002346!1.89e-24!71;UBERON:0003075!1.89e-24!71;UBERON:0007284!1.89e-24!71;UBERON:0000073!1.19e-23!75;UBERON:0001016!1.19e-23!75;UBERON:0001017!1.52e-23!73;UBERON:0005743!1.52e-23!73;UBERON:0003056!1.38e-22!49;UBERON:0001049!1.41e-21!52;UBERON:0005068!1.41e-21!52;UBERON:0006241!1.41e-21!52;UBERON:0007135!1.41e-21!52;UBERON:0000955!6.10e-21!50;UBERON:0006238!6.10e-21!50;UBERON:0002616!3.52e-20!49;UBERON:0002020!8.76e-19!34;UBERON:0003080!1.19e-18!40;UBERON:0002780!5.52e-18!39;UBERON:0001890!5.52e-18!39;UBERON:0006240!5.52e-18!39;UBERON:0002791!2.91e-16!29;UBERON:0003528!2.91e-16!29;UBERON:0001893!2.91e-16!29;UBERON:0007811!6.72e-12!86;UBERON:0000956!7.96e-12!21;UBERON:0001869!7.96e-12!21;UBERON:0000203!7.96e-12!21;UBERON:0000153!1.09e-10!94;UBERON:0002619!5.19e-10!17;UBERON:0002021!6.74e-08!10;UBERON:0000411!6.74e-08!10;UBERON:0001950!6.74e-08!10 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0010371,7.71e-29,73;UBERON:0004121,3.35e-27,95;UBERON:0000924,3.35e-27,95;UBERON:0006601,3.35e-27,95;UBERON:0002346,1.45e-26,64;UBERON:0003075,1.45e-26,64;UBERON:0007284,1.45e-26,64;UBERON:0003056,1.21e-25,49;UBERON:0000073,1.81e-24,54;UBERON:0002020,4.07e-23,34;UBERON:0001049,6.92e-23,52;UBERON:0005068,6.92e-23,52;UBERON:0006241,6.92e-23,52;UBERON:0007135,6.92e-23,52;UBERON:0001017,5.02e-22,73;UBERON:0001016,7.40e-21,75;UBERON:0003080,1.16e-20,40;UBERON:0003528,6.80e-20,29;UBERON:0002791,6.80e-20,29;UBERON:0001893,6.80e-20,29;UBERON:0000955,7.16e-20,47;UBERON:0006238,7.16e-20,47;UBERON:0002780,7.75e-20,39;UBERON:0001890,7.75e-20,39;UBERON:0006240,7.75e-20,39;UBERON:0002616,5.63e-19,46;UBERON:0010314,1.24e-16,92;UBERON:0000956,3.10e-14,21;UBERON:0001869,3.10e-14,21;UBERON:0000203,3.10e-14,21;UBERON:0002619,6.44e-12,17;UBERON:0002021,1.17e-09,10;UBERON:0000411,1.17e-09,10;UBERON:0001950,1.17e-09,10;UBERON:0002420,7.59e-07,8;UBERON:0007245,7.59e-07,8;UBERON:0010009,7.59e-07,8;UBERON:0010011,7.59e-07,8;UBERON:0000454,7.59e-07,8 | |||
|phase1_expression=2.40223270657191,0.348975407639361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53077922271926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.40638862914521,2.83855407414641,2.9367480345869,0,0.436050312760893,0.219686182734472,1.1665793944457,0.419959264876088,0,0,0,0,1.02903774414379,1.14613375975503,0.515672092277442,4.45096213891115,4.7609188134483,3.1691570175309,0,0,0,0,0,0.299600110518405,0,5.49554945234932,2.56511282830212,2.10324961351382,1.99955689082663,2.65042249141936,6.73699395682247,3.83381884072945,3.67687514644008,6.60695285996332,4.72443150915195,5.52983519722476,4.48413378282659,3.7509933876988,8.85552729946492,2.23346399201105,5.6276261003168,5.34793867218835,6.18720029494702,9.5389026135399,5.21918448310842,0.908714319998209,0.831287161174641,1.73918693221007,0,0,0,0,0,0,1.53387290320252,0.779358013808606,0.70667914902068,2.25349471642689,0,0,0,0.865964164044856,0.506719730950197,0,0.5709193985953,0,1.63286352971307,0.346970653532272,0.608930956624282,0.461230994512117,0.150722640552623,1.05829836422134,0.251333182659351,0,0.578397427679647,0,1.13236794963186,0.220841518460394,0,0,0.878342391034642,0.41889341362691,0,0,0,0,7.04016005202667,10.0650132620098,6.78533501409468,9.21268897019065,7.41574826257959,6.44142938134636,8.76102820565891,0.611036183101898,0,0.505445516867349,1.05220927943237,1.56144531555244,2.06911893990126,2.88099407688559,3.16480117455002,6.73561341598146,8.96796041993949,7.21503279109912,4.9153640440413,0.646703978798527,0.378212160335639,0.527853372491847,0.219195732427575,0.278047249225598,0,0.205782136407943,0.199034266818493,0,0,0,0,0,0,0,0,0.154267112887378,0,0,0.467061369468678,0.16455984991348,0,0.0810688095458557,0,0,0.134206418760372,6.9395683026162,9.2614151141356,0,0,0,0,0.515469845288373,0.80673409849337,0.22237804384487,0,0,0.329397909448022,0.251335208800269,0.198956472041151,0,0,0,0.199141273254367,0,0.114248512609729,0,0,0.193952487167626,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162135226775035,0,0,0,0,0,0,0.482443521363367,0,0.568474235311454,0,0.509235257325564,0,0.335012514883631,0,0.975668239288994,0,0.44292937929755,0.159454768657487,0.163863314715738,0.172684981865896,0.433947175744535,0,0,0.491764273019036,0,8.50918126935297,6.56385444916338,3.11476396215683,0.252470927204373,0.315508219416257,0.780877488593277,1.07711698866399,0.716906393857656,1.11399337041197,0.566153061577665,0.809621403349789,0.292255857911312,1.58115111178609,9.96096080907602,2.6968616189571,0.35613120733451,0.488660878060728,2.47455184458803,0,0,0,0,0.590603785761546,0,0.775284879504663,0.363533729477506,0.356497378384721,0.316036757935816,0,0,3.06395645178409,1.98067203434441,0.388076051348264,1.92903331528433,1.24138163549592,0.891844088010353,0.822745103010605,1.522324745573,0,0,1.10264199027481,5.93590510589328,2.26050197374268,1.99032652262914,2.50681922406587,2.9545361954111,0,4.45020724825223,0,0,0,0.188368457004691,0.136694227721025,0,0,0,0,0,0.474503990371703,0.406638934253697,0,0.209088296014469,0.436725127492355,0,0.247960367176008,0.26175594198403,0,0,1.69107881605257,0.448549638131936,0.66183396182839,1.36115831840833,0.904118764344118,2.53434188236167,2.22978753426933,3.9061315453185,4.29923312145414,1.93267296660805,1.72818003754719,0.632022241256357,0.202725215290164,0.102710957164827,0,0,0,0,0,0.100966449948148,0,0,0.0974578807397524,0,0.116876902181569,1.58711268530648,0,0,0,0.386379188064381,0.750729901804728,1.09890974560359,1.50057865355346,1.50471631210609,12.4245405375755,8.28585425712918,8.59343270159095,9.10821866421544,4.7955776383945,9.06472676867641,8.77529250301348,5.40385443869065,11.7817026335893,5.69536342927002,2.07574695168353,3.99024873401031,3.41467211508268,2.67417388775123,3.14419743941973,1.83843508450014,2.22246727801615,1.85431551515005,3.85103051510178,2.52697211763797,2.28131369901216,2.26351609663291,2.34103768674706,1.6646539625266,2.06767688240208,1.90517476513229,1.85414921511769,1.15745532278223,1.64834360321323,1.32479028120958,3.42869252385415,1.95223386775271,2.62279808942053,1.74415699958794,1.12931256498397,2.5384382367503,1.28049581010941,0.526139422875686,2.17286582153379,3.36685362994643,1.77952527186261,1.87158516513571,1.22769312950907,2.01417893541756,1.73615949883027,2.49810577937946,1.40358965067245,1.93383948643468,1.72159498861959,0.661774257358546,1.15933917810211 | |phase1_expression=2.40223270657191,0.348975407639361,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53077922271926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.40638862914521,2.83855407414641,2.9367480345869,0,0.436050312760893,0.219686182734472,1.1665793944457,0.419959264876088,0,0,0,0,1.02903774414379,1.14613375975503,0.515672092277442,4.45096213891115,4.7609188134483,3.1691570175309,0,0,0,0,0,0.299600110518405,0,5.49554945234932,2.56511282830212,2.10324961351382,1.99955689082663,2.65042249141936,6.73699395682247,3.83381884072945,3.67687514644008,6.60695285996332,4.72443150915195,5.52983519722476,4.48413378282659,3.7509933876988,8.85552729946492,2.23346399201105,5.6276261003168,5.34793867218835,6.18720029494702,9.5389026135399,5.21918448310842,0.908714319998209,0.831287161174641,1.73918693221007,0,0,0,0,0,0,1.53387290320252,0.779358013808606,0.70667914902068,2.25349471642689,0,0,0,0.865964164044856,0.506719730950197,0,0.5709193985953,0,1.63286352971307,0.346970653532272,0.608930956624282,0.461230994512117,0.150722640552623,1.05829836422134,0.251333182659351,0,0.578397427679647,0,1.13236794963186,0.220841518460394,0,0,0.878342391034642,0.41889341362691,0,0,0,0,7.04016005202667,10.0650132620098,6.78533501409468,9.21268897019065,7.41574826257959,6.44142938134636,8.76102820565891,0.611036183101898,0,0.505445516867349,1.05220927943237,1.56144531555244,2.06911893990126,2.88099407688559,3.16480117455002,6.73561341598146,8.96796041993949,7.21503279109912,4.9153640440413,0.646703978798527,0.378212160335639,0.527853372491847,0.219195732427575,0.278047249225598,0,0.205782136407943,0.199034266818493,0,0,0,0,0,0,0,0,0.154267112887378,0,0,0.467061369468678,0.16455984991348,0,0.0810688095458557,0,0,0.134206418760372,6.9395683026162,9.2614151141356,0,0,0,0,0.515469845288373,0.80673409849337,0.22237804384487,0,0,0.329397909448022,0.251335208800269,0.198956472041151,0,0,0,0.199141273254367,0,0.114248512609729,0,0,0.193952487167626,0,0,0,0,0,0,0,0,0,0,0,0,0,0.162135226775035,0,0,0,0,0,0,0.482443521363367,0,0.568474235311454,0,0.509235257325564,0,0.335012514883631,0,0.975668239288994,0,0.44292937929755,0.159454768657487,0.163863314715738,0.172684981865896,0.433947175744535,0,0,0.491764273019036,0,8.50918126935297,6.56385444916338,3.11476396215683,0.252470927204373,0.315508219416257,0.780877488593277,1.07711698866399,0.716906393857656,1.11399337041197,0.566153061577665,0.809621403349789,0.292255857911312,1.58115111178609,9.96096080907602,2.6968616189571,0.35613120733451,0.488660878060728,2.47455184458803,0,0,0,0,0.590603785761546,0,0.775284879504663,0.363533729477506,0.356497378384721,0.316036757935816,0,0,3.06395645178409,1.98067203434441,0.388076051348264,1.92903331528433,1.24138163549592,0.891844088010353,0.822745103010605,1.522324745573,0,0,1.10264199027481,5.93590510589328,2.26050197374268,1.99032652262914,2.50681922406587,2.9545361954111,0,4.45020724825223,0,0,0,0.188368457004691,0.136694227721025,0,0,0,0,0,0.474503990371703,0.406638934253697,0,0.209088296014469,0.436725127492355,0,0.247960367176008,0.26175594198403,0,0,1.69107881605257,0.448549638131936,0.66183396182839,1.36115831840833,0.904118764344118,2.53434188236167,2.22978753426933,3.9061315453185,4.29923312145414,1.93267296660805,1.72818003754719,0.632022241256357,0.202725215290164,0.102710957164827,0,0,0,0,0,0.100966449948148,0,0,0.0974578807397524,0,0.116876902181569,1.58711268530648,0,0,0,0.386379188064381,0.750729901804728,1.09890974560359,1.50057865355346,1.50471631210609,12.4245405375755,8.28585425712918,8.59343270159095,9.10821866421544,4.7955776383945,9.06472676867641,8.77529250301348,5.40385443869065,11.7817026335893,5.69536342927002,2.07574695168353,3.99024873401031,3.41467211508268,2.67417388775123,3.14419743941973,1.83843508450014,2.22246727801615,1.85431551515005,3.85103051510178,2.52697211763797,2.28131369901216,2.26351609663291,2.34103768674706,1.6646539625266,2.06767688240208,1.90517476513229,1.85414921511769,1.15745532278223,1.64834360321323,1.32479028120958,3.42869252385415,1.95223386775271,2.62279808942053,1.74415699958794,1.12931256498397,2.5384382367503,1.28049581010941,0.526139422875686,2.17286582153379,3.36685362994643,1.77952527186261,1.87158516513571,1.22769312950907,2.01417893541756,1.73615949883027,2.49810577937946,1.40358965067245,1.93383948643468,1.72159498861959,0.661774257358546,1.15933917810211 | ||
|short_description=p4@Pak3 | |short_description=p4@Pak3 | ||
}} | }} |
Latest revision as of 16:03, 1 October 2015
Short description: | p4@Pak3 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Pak3_5end |
Coexpression cluster: | MCL_coexpression_mm9:3743 |
Association with transcript: | 0bp_to_ENSMUST00000033640, ENSMUST00000070348, NM_001195048, uc009umg.2_5end |
EntrezGene: | Pak3 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.68e-15 | 23 |
neuroblast (sensu Vertebrata) | 2.68e-15 | 23 |
electrically responsive cell | 4.13e-12 | 39 |
electrically active cell | 4.13e-12 | 39 |
neuron | 5.15e-11 | 33 |
neuronal stem cell | 5.15e-11 | 33 |
neuroblast | 5.15e-11 | 33 |
electrically signaling cell | 5.15e-11 | 33 |
ectodermal cell | 3.40e-07 | 44 |
neurectodermal cell | 3.40e-07 | 44 |
neural cell | 7.12e-07 | 43 |