FFCP PHASE1:Hg19::chr14:29254914..29254931,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=58bp_to_uc001wqg.1_5end | |association_with_transcript=58bp_to_uc001wqg.1_5end | ||
|cluster_id=chr14:29254914..29254931,- | |||
|description=CAGE_peak_1_at_uc001wqg.1_5end | |description=CAGE_peak_1_at_uc001wqg.1_5end | ||
|id=chr14:29254914..29254931,- | |id=chr14:29254914..29254931,- | ||
|ontology_enrichment_celltype=CL:0002319!3.79e-24!25;CL:0000243!5.03e-22!15;CL:0000125!5.03e-22!15;CL:0000030!5.03e-22!15;CL:0000339!5.03e-22!15;CL:0000095!2.11e-19!17;CL:0000123!2.11e-19!17;CL:0000133!2.35e-12!59;CL:0002605!6.89e-10!3;CL:0000221!1.49e-09!71;CL:0000333!2.30e-08!41;CL:0000128!5.72e-07!7;CL:0000126!5.72e-07!7;CL:0000127!5.72e-07!7;CL:0002453!5.72e-07!7 | |ontology_enrichment_celltype=CL:0002319!3.79e-24!25;CL:0000243!5.03e-22!15;CL:0000125!5.03e-22!15;CL:0000030!5.03e-22!15;CL:0000339!5.03e-22!15;CL:0000095!2.11e-19!17;CL:0000123!2.11e-19!17;CL:0000133!2.35e-12!59;CL:0002605!6.89e-10!3;CL:0000221!1.49e-09!71;CL:0000333!2.30e-08!41;CL:0000128!5.72e-07!7;CL:0000126!5.72e-07!7;CL:0000127!5.72e-07!7;CL:0002453!5.72e-07!7 | ||
|ontology_enrichment_celltype_v019=CL:0002605;1.15e-19;3!CL:0002319;1.21e-18;25!CL:0000243;1.21e-13;15!CL:0000125;1.21e-13;15!CL:0000095;3.06e-12;17!CL:0000128;5.59e-09;7!CL:0000126;5.59e-09;7!CL:0000127;5.59e-09;7!CL:0000047;2.40e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002605,1.39e-19,3;CL:0002319,1.48e-18,25;CL:0000243,1.35e-13,15;CL:0000125,1.35e-13,15;CL:0000030,1.35e-13,15;CL:0000339,1.35e-13,15;CL:0000095,3.39e-12,17;CL:0000123,3.39e-12,17;CL:0000128,6.06e-09,7;CL:0000126,6.06e-09,7;CL:0000127,6.06e-09,7;CL:0002453,6.06e-09,7;CL:0000133,4.54e-08,59;CL:0000047,5.18e-08,8 | |||
|ontology_enrichment_development_v019=CL:0000339;1.21e-13;15 | |||
|ontology_enrichment_disease=DOID:3093!9.45e-11!11 | |ontology_enrichment_disease=DOID:3093!9.45e-11!11 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!6.34e-59!82;UBERON:0005743!1.06e-55!86;UBERON:0000073!1.34e-54!94;UBERON:0001016!1.34e-54!94;UBERON:0002780!4.03e-54!41;UBERON:0001890!4.03e-54!41;UBERON:0006240!4.03e-54!41;UBERON:0001893!2.52e-53!34;UBERON:0001869!1.11e-52!32;UBERON:0003080!1.16e-52!42;UBERON:0000955!6.42e-52!69;UBERON:0006238!6.42e-52!69;UBERON:0002791!7.76e-51!33;UBERON:0002020!2.93e-45!34;UBERON:0003528!2.93e-45!34;UBERON:0000956!1.99e-44!25;UBERON:0000203!1.99e-44!25;UBERON:0003056!1.15e-41!61;UBERON:0001049!7.61e-37!57;UBERON:0005068!7.61e-37!57;UBERON:0006241!7.61e-37!57;UBERON:0007135!7.61e-37!57;UBERON:0002619!1.46e-36!22;UBERON:0000153!2.14e-36!129;UBERON:0007811!2.14e-36!129;UBERON:0001950!5.20e-36!20;UBERON:0002616!2.46e-35!59;UBERON:0000033!2.78e-33!123;UBERON:0003075!5.68e-31!86;UBERON:0007284!5.68e-31!86;UBERON:0004121!1.11e-29!169;UBERON:0002346!3.42e-29!90;UBERON:0000924!1.02e-28!173;UBERON:0006601!1.02e-28!173;UBERON:0007023!4.58e-18!115;UBERON:0000200!4.64e-17!6;UBERON:0001871!4.05e-12!7;UBERON:0002021!3.82e-10!5;UBERON:0001872!1.76e-09!5;UBERON:0002771!2.41e-09!3;UBERON:0000475!3.38e-09!365;UBERON:0000025!2.62e-08!194;UBERON:0002420!2.26e-07!9;UBERON:0007245!2.26e-07!9;UBERON:0010009!2.26e-07!9;UBERON:0010011!2.26e-07!9;UBERON:0000454!2.26e-07!9;UBERON:0001870!4.70e-07!2;UBERON:0000064!5.59e-07!219;UBERON:0000369!7.79e-07!4;UBERON:0002435!7.79e-07!4;UBERON:0000204!7.79e-07!4;UBERON:0010082!7.79e-07!4;UBERON:0000007!9.50e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0000956;2.11e-19;25!UBERON:0000203;2.11e-19;25!UBERON:0002791;6.62e-15;32!UBERON:0001869;8.25e-15;32!UBERON:0003528;6.00e-13;34!UBERON:0002020;6.00e-13;34!UBERON:0002021;2.38e-12;5!UBERON:0001893;1.00e-11;34!UBERON:0001950;3.36e-11;20!UBERON:0002619;3.00e-10;22!UBERON:0002780;3.15e-10;41!UBERON:0001890;3.15e-10;41!UBERON:0002702;1.55e-08;2!UBERON:0001016;5.24e-08;83!UBERON:0000955;7.66e-08;68!UBERON:0000073;2.04e-07;53!UBERON:0002616;2.04e-07;53!UBERON:0001017;5.34e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000956,2.25e-19,25;UBERON:0000203,2.25e-19,25;UBERON:0001017,4.61e-16,81;UBERON:0002791,3.19e-15,32;UBERON:0001869,3.19e-15,32;UBERON:0001016,2.15e-14,89;UBERON:0003528,2.43e-14,34;UBERON:0002020,2.43e-14,34;UBERON:0001893,2.43e-14,34;UBERON:0002021,2.67e-12,5;UBERON:0000955,2.72e-12,68;UBERON:0006238,2.72e-12,68;UBERON:0002780,6.55e-12,41;UBERON:0001890,6.55e-12,41;UBERON:0003080,6.55e-12,41;UBERON:0006240,6.55e-12,41;UBERON:0001950,3.36e-11,20;UBERON:0002619,3.00e-10,22;UBERON:0000073,3.35e-09,53;UBERON:0002616,3.35e-09,53;UBERON:0001049,1.06e-08,56;UBERON:0005068,1.06e-08,56;UBERON:0006241,1.06e-08,56;UBERON:0007135,1.06e-08,56;UBERON:0002702,1.50e-08,2;UBERON:0003056,5.66e-08,61;UBERON:0011216,9.68e-08,223;UBERON:0004121,4.31e-07,171;UBERON:0000924,4.31e-07,171;UBERON:0006601,4.31e-07,171 | |||
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| ||
|short_description=p1@uc001wqg.1 | |short_description=p1@uc001wqg.1 | ||
}} | }} |
Latest revision as of 20:04, 24 July 2015
Short description: | p1@uc001wqg.1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_uc001wqg.1_5end |
Coexpression cluster: | NA |
Association with transcript: | 58bp_to_uc001wqg.1_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
astrocyte of the cerebral cortex | 1.39e-19 | 3 |
neural cell | 1.48e-18 | 25 |
glial cell (sensu Vertebrata) | 1.35e-13 | 15 |
glial cell | 1.35e-13 | 15 |
glioblast | 1.35e-13 | 15 |
glioblast (sensu Vertebrata) | 1.35e-13 | 15 |
neuron associated cell | 3.39e-12 | 17 |
neuron associated cell (sensu Vertebrata) | 3.39e-12 | 17 |
oligodendrocyte | 6.06e-09 | 7 |
macroglial cell | 6.06e-09 | 7 |
astrocyte | 6.06e-09 | 7 |
oligodendrocyte precursor cell | 6.06e-09 | 7 |
neurectodermal cell | 4.54e-08 | 59 |
neuronal stem cell | 5.18e-08 | 8 |
Ontology term | p-value | n |
---|---|---|
cerebral cortex | 2.25e-19 | 25 |
pallium | 2.25e-19 | 25 |
central nervous system | 4.61e-16 | 81 |
regional part of telencephalon | 3.19e-15 | 32 |
cerebral hemisphere | 3.19e-15 | 32 |
nervous system | 2.15e-14 | 89 |
brain grey matter | 2.43e-14 | 34 |
gray matter | 2.43e-14 | 34 |
telencephalon | 2.43e-14 | 34 |
occipital lobe | 2.67e-12 | 5 |
brain | 2.72e-12 | 68 |
future brain | 2.72e-12 | 68 |
regional part of forebrain | 6.55e-12 | 41 |
forebrain | 6.55e-12 | 41 |
anterior neural tube | 6.55e-12 | 41 |
future forebrain | 6.55e-12 | 41 |
neocortex | 3.36e-11 | 20 |
regional part of cerebral cortex | 3.00e-10 | 22 |
regional part of nervous system | 3.35e-09 | 53 |
regional part of brain | 3.35e-09 | 53 |
neural tube | 1.06e-08 | 56 |
neural rod | 1.06e-08 | 56 |
future spinal cord | 1.06e-08 | 56 |
neural keel | 1.06e-08 | 56 |
middle frontal gyrus | 1.50e-08 | 2 |
pre-chordal neural plate | 5.66e-08 | 61 |
organ system subdivision | 9.68e-08 | 223 |
ectoderm-derived structure | 4.31e-07 | 171 |
ectoderm | 4.31e-07 | 171 |
presumptive ectoderm | 4.31e-07 | 171 |