FFCP PHASE1:Hg19::chr1:202162920..202162945,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=59352 | |EntrezGene=59352 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19719 | |HGNC=19719 | ||
|TSSclassifier=strong | |||
|UniProt=F5H084 | |UniProt=F5H084 | ||
|association_with_transcript=0bp_to_ENST00000420582_5end | |association_with_transcript=0bp_to_ENST00000420582_5end | ||
|cluster_id=chr1:202162920..202162945,+ | |||
|coexpression_cluster_id=C3921 | |||
|description=CAGE_peak_1_at_LGR6_5end | |description=CAGE_peak_1_at_LGR6_5end | ||
|id=chr1:202162920..202162945,+ | |id=chr1:202162920..202162945,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000623;2.67e-09;3!CL:0000039;2.62e-07;7!CL:0000586;2.62e-07;7 | |||
|ontology_enrichment_celltype_v019_2=CL:0000623,4.87e-09,3;CL:0000825,4.87e-09,3;CL:0000039,2.58e-07,7;CL:0000586,2.58e-07,7 | |||
|ontology_enrichment_development_v019=UBERON:0004872;1.65e-10;7!UBERON:0009117;1.97e-07;10!UBERON:0005564;1.97e-07;10!UBERON:0006965;3.12e-07;2 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.22e-49!115;UBERON:0001049!8.74e-23!57;UBERON:0005068!8.74e-23!57;UBERON:0006241!8.74e-23!57;UBERON:0007135!8.74e-23!57;UBERON:0003075!6.43e-19!86;UBERON:0007284!6.43e-19!86;UBERON:0002616!1.89e-17!59;UBERON:0002346!2.17e-17!90;UBERON:0001017!1.46e-15!82;UBERON:0005743!4.61e-15!86;UBERON:0000955!1.34e-14!69;UBERON:0006238!1.34e-14!69;UBERON:0003080!1.08e-12!42;UBERON:0003076!1.24e-12!15;UBERON:0003057!1.24e-12!15;UBERON:0000073!2.23e-12!94;UBERON:0001016!2.23e-12!94;UBERON:0002780!7.83e-12!41;UBERON:0001890!7.83e-12!41;UBERON:0006240!7.83e-12!41;UBERON:0004121!8.04e-11!169;UBERON:0004111!1.71e-10!241;UBERON:0000153!3.44e-10!129;UBERON:0007811!3.44e-10!129;UBERON:0000924!3.52e-10!173;UBERON:0006601!3.52e-10!173;UBERON:0004733!9.98e-10!12;UBERON:0002028!9.98e-10!12;UBERON:0007277!9.98e-10!12;UBERON:0000025!1.08e-09!194;UBERON:0000033!2.34e-09!123;UBERON:0003056!2.88e-09!61;UBERON:0000477!3.20e-09!286;UBERON:0004732!9.47e-09!13;UBERON:0000062!1.31e-08!511;UBERON:0002680!1.68e-08!9;UBERON:0001895!1.68e-08!9;UBERON:0010092!1.68e-08!9;UBERON:0002020!3.23e-08!34;UBERON:0003528!3.23e-08!34;UBERON:0001893!9.38e-08!34;UBERON:0002619!1.00e-07!22;UBERON:0001950!1.23e-07!20;UBERON:0001869!1.63e-07!32;UBERON:0002791!2.93e-07!33 | |||
|ontology_enrichment_uberon_v019=UBERON:0004733;8.02e-16;12!UBERON:0002028;8.02e-16;12!UBERON:0004732;1.73e-14;13!UBERON:0002298;9.29e-14;6!UBERON:0002680;3.70e-12;9!UBERON:0001895;3.70e-12;9!UBERON:0000988;1.03e-10;3!UBERON:0000007;7.73e-08;2!UBERON:0002148;1.03e-07;2!UBERON:0006331;1.03e-07;2!UBERON:0009662;1.03e-07;2!UBERON:0001829;1.40e-07;2!UBERON:0007023;1.51e-07;114!UBERON:0001894;1.65e-07;7!UBERON:0000073;1.97e-07;53!UBERON:0002616;1.97e-07;53!UBERON:0000341;5.17e-07;2!UBERON:0001897;5.17e-07;2!UBERON:0010225;5.17e-07;2!UBERON:0003135;6.37e-07;11!UBERON:0000922;8.20e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,7.42e-24,114;UBERON:0003076,5.66e-19,15;UBERON:0003057,5.66e-19,15;UBERON:0004733,9.00e-16,12;UBERON:0002028,9.00e-16,12;UBERON:0007277,9.00e-16,12;UBERON:0004732,1.92e-14,13;UBERON:0002298,8.64e-14,6;UBERON:0001049,5.73e-13,56;UBERON:0005068,5.73e-13,56;UBERON:0006241,5.73e-13,56;UBERON:0007135,5.73e-13,56;UBERON:0002680,4.40e-12,9;UBERON:0001895,4.40e-12,9;UBERON:0010092,4.40e-12,9;UBERON:0000073,8.86e-11,53;UBERON:0002616,8.86e-11,53;UBERON:0000988,1.04e-10,3;UBERON:0003075,1.02e-09,82;UBERON:0007284,1.02e-09,82;UBERON:0002346,4.73e-09,86;UBERON:0010371,1.29e-08,104;UBERON:0010314,7.05e-08,132;UBERON:0000007,7.62e-08,2;UBERON:0002148,9.87e-08,2;UBERON:0006331,9.87e-08,2;UBERON:0009662,9.87e-08,2;UBERON:0001894,1.41e-07,7;UBERON:0006222,1.41e-07,7;UBERON:0001829,1.45e-07,2;UBERON:0001017,1.47e-07,81;UBERON:0000955,1.83e-07,68;UBERON:0006238,1.83e-07,68;UBERON:0001897,3.94e-07,2;UBERON:0010225,3.94e-07,2;UBERON:0000341,5.03e-07,2;UBERON:0003135,6.26e-07,11;UBERON:0004111,9.29e-07,240 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0.245733936501509,0,0,0.263766978228454,0,0,0,0,0,0,0.123121058076788,1.02000345622126,0,0,0,0,0,0,0,0.393364276848904,2.68680578668049,2.32224184974114,0,0,0,0,0,0,0,0.401088894940283,0,0,0,0,0,0.377875943688809,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0,2.42159801053347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318565414324097,0,0,0,0.511946444617674,1.24930726552346,0.947109008176067,0,1.20964045934839,0.267440195783507,0.579297615531196,0,0,0,0,0,0,0,0,0.378139268656271,0.886917589850256,0.263504357079378,0.523916301990851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.81014194788176,0,0,0,0,0,0,0,0,0,0,0,0.264818361626438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18611685633159,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0.504641701751257,0,0,3.21620469096443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71072446022705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.56139988262505,1.07813787429759,1.02674429023799,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.647142602455851,0.533637789017222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0.229628896329213,0,0,0,0,0,0,0,0,0,0,0,0.270946437543853,0.501689773854853,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.842516912477962,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0.569647187174163,0.952927101831156,0.411362273086194,0,0,0.79312517629427,0,0,0,0,0.721346064882224,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,1.18785872333055,0.307160702099232,0,0.562677665642051,0,0,0.211125408127993,20.7217907781113,0.276283915531148,0,0,0,0,0.0898683511473268,0,0,0.493217028184668,0,0,0,0.185536196323703,0,0,0,2.89999830173917,0.1137934482855,0,0,0,0,0,0,0,1.52581736317083,0.663475559587348,7.38869047383869,0.219385397153973,0,0,1.15425387755696,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216388639742091,1.99052386215701,0.0884575645033392,1.22206028986725,0,0,0,0.67401132980677,0,0.937057782901357,0,0,0,0,0,0.30607276163049,0.189559738885464,0,0,0,0,0,0,0,0.970722711091971,0,0,0,3.31980669659857,0,0,0,0,2.42472541221049,0,2.03382666702479,0,0,0.189932387867636,0.391102765469606,0,26.2547183529404,0,0.432271251462318,0,0,0,0,0,0,0,0,0,0.600420288709789,2.19048606227189,0,0,0,1.11712960508902,10.9997003525608,0.717873024576814,0.199679000498991,0.429226048136571,0.669514372325618,1.5452198671947,0,0,0,0,0,0,0,0,0.408610218334727,0,0,0,0,0,0.303747783290123,0,0.472834243795189,0.472091293214983,0,0,0,1.42939065274673,0.662091970365432,0,0,0,0,0,0.082092520749339,0,0,0.146552233678082,0,4.52490347265427,5.81823447667836,0.342173675768659,2.11444506695002,0.961086713109252,2.67247318669432,1.24271716604159,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,4.32623300993724,3.72578417648301,0,0.37494122388632,0,0,0,0,0.434763085832475,0,0,0,0,0.251567901752575,0,0,0,0.15543720058278,0,0,0,0,0,0,0,0.150257608997218,0,0,0,0,0,0,0,0,0,1.26184898228651,0,0,0,0,0,0.244736704506468,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,2.48830904013189,0,0,0,0,0,0,0,0,0,0.70975570501128,0,0,0.918736432059601,0.192687675289379,0,1.75597244962866,1.64093091392604,0.504143392443436,0.829887029570615,0,0,0,0,0,0,0,0,5.17182177502314,1.0529445968896,0,0,0,0,0.443568258651136,0.270150338473579,0,0.206686796501184,0.253663240775627,1.09394961803644,4.93431990171464,0.496211178389294,0,0,0,0.336283722218824,6.06965604236632,7.51285231459282,0.0887023701626388,0,0.514464028312255,4.2820931775404,0.460409414939944,0,0,2.19780659981439,0,0,0,0.215927591218621,0,0.357382720883282,0,0,0,0,0,0.17071847709395,0,3.01159151174194,0,0,0.423387050190929,2.97838929107265,0,0,0,0,0.243835849964539,0,0,0,14.085618798715,0,0,0,0.11294608203896,0,0,0.0771741581079447,0,0,0.735444965261716,0,1.57046773691956,0.594092800654172,2.113278637917,0,1.31577485171795,2.57831551894309,0,0,0,0,0,3.21110498383179,0,0,0.271965960763659,0.872701380680755,0.5290268405154,0,0,0,0,0,0,2.2437542543236,2.6721740526556,3.40011128278926,2.25636785363138,0.227336094654718,0,1.65833887891756,3.30985586758065,1.27940389140589,3.33290204049236,0,0.248298857183432,0.112131862580613,0.190941474834495,0.808468755832877,1.30630048738177,1.36893320434112,0.336760265072938,0.502055437748735,5.65522606128223,0.407016343054873,0.106727345877715,0,1.97615444634491,0,0.611207220914332,0.813792356631477,0,1.40891655513718,0 | |phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0.245733936501509,0,0,0.263766978228454,0,0,0,0,0,0,0.123121058076788,1.02000345622126,0,0,0,0,0,0,0,0.393364276848904,2.68680578668049,2.32224184974114,0,0,0,0,0,0,0,0.401088894940283,0,0,0,0,0,0.377875943688809,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0,2.42159801053347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382273228125229,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318565414324097,0,0,0,0.511946444617674,1.24930726552346,0.947109008176067,0,1.20964045934839,0.267440195783507,0.579297615531196,0,0,0,0,0,0,0,0,0.378139268656271,0.886917589850256,0.263504357079378,0.523916301990851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.81014194788176,0,0,0,0,0,0,0,0,0,0,0,0.264818361626438,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18611685633159,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.10366105501537,0.504641701751257,0,0,3.21620469096443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.71072446022705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.56139988262505,1.07813787429759,1.02674429023799,0.254094624222463,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.413536052245775,0.647142602455851,0.533637789017222,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,0,0,0.229628896329213,0,0,0,0,0,0,0,0,0,0,0,0.270946437543853,0.501689773854853,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.842516912477962,0,0,0,0,0.141405431953713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0.569647187174163,0.952927101831156,0.411362273086194,0,0,0.79312517629427,0,0,0,0,0.721346064882224,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0,0,1.18785872333055,0.307160702099232,0,0.562677665642051,0,0,0.211125408127993,20.7217907781113,0.276283915531148,0,0,0,0,0.0898683511473268,0,0,0.493217028184668,0,0,0,0.185536196323703,0,0,0,2.89999830173917,0.1137934482855,0,0,0,0,0,0,0,1.52581736317083,0.663475559587348,7.38869047383869,0.219385397153973,0,0,1.15425387755696,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.216388639742091,1.99052386215701,0.0884575645033392,1.22206028986725,0,0,0,0.67401132980677,0,0.937057782901357,0,0,0,0,0,0.30607276163049,0.189559738885464,0,0,0,0,0,0,0,0.970722711091971,0,0,0,3.31980669659857,0,0,0,0,2.42472541221049,0,2.03382666702479,0,0,0.189932387867636,0.391102765469606,0,26.2547183529404,0,0.432271251462318,0,0,0,0,0,0,0,0,0,0.600420288709789,2.19048606227189,0,0,0,1.11712960508902,10.9997003525608,0.717873024576814,0.199679000498991,0.429226048136571,0.669514372325618,1.5452198671947,0,0,0,0,0,0,0,0,0.408610218334727,0,0,0,0,0,0.303747783290123,0,0.472834243795189,0.472091293214983,0,0,0,1.42939065274673,0.662091970365432,0,0,0,0,0,0.082092520749339,0,0,0.146552233678082,0,4.52490347265427,5.81823447667836,0.342173675768659,2.11444506695002,0.961086713109252,2.67247318669432,1.24271716604159,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,4.32623300993724,3.72578417648301,0,0.37494122388632,0,0,0,0,0.434763085832475,0,0,0,0,0.251567901752575,0,0,0,0.15543720058278,0,0,0,0,0,0,0,0.150257608997218,0,0,0,0,0,0,0,0,0,1.26184898228651,0,0,0,0,0,0.244736704506468,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0,0,0,0,0,0,2.48830904013189,0,0,0,0,0,0,0,0,0,0.70975570501128,0,0,0.918736432059601,0.192687675289379,0,1.75597244962866,1.64093091392604,0.504143392443436,0.829887029570615,0,0,0,0,0,0,0,0,5.17182177502314,1.0529445968896,0,0,0,0,0.443568258651136,0.270150338473579,0,0.206686796501184,0.253663240775627,1.09394961803644,4.93431990171464,0.496211178389294,0,0,0,0.336283722218824,6.06965604236632,7.51285231459282,0.0887023701626388,0,0.514464028312255,4.2820931775404,0.460409414939944,0,0,2.19780659981439,0,0,0,0.215927591218621,0,0.357382720883282,0,0,0,0,0,0.17071847709395,0,3.01159151174194,0,0,0.423387050190929,2.97838929107265,0,0,0,0,0.243835849964539,0,0,0,14.085618798715,0,0,0,0.11294608203896,0,0,0.0771741581079447,0,0,0.735444965261716,0,1.57046773691956,0.594092800654172,2.113278637917,0,1.31577485171795,2.57831551894309,0,0,0,0,0,3.21110498383179,0,0,0.271965960763659,0.872701380680755,0.5290268405154,0,0,0,0,0,0,2.2437542543236,2.6721740526556,3.40011128278926,2.25636785363138,0.227336094654718,0,1.65833887891756,3.30985586758065,1.27940389140589,3.33290204049236,0,0.248298857183432,0.112131862580613,0.190941474834495,0.808468755832877,1.30630048738177,1.36893320434112,0.336760265072938,0.502055437748735,5.65522606128223,0.407016343054873,0.106727345877715,0,1.97615444634491,0,0.611207220914332,0.813792356631477,0,1.40891655513718,0 | ||
|short_description=p1@LGR6 | |short_description=p1@LGR6 | ||
}} | }} |
Latest revision as of 20:13, 19 September 2015
Short description: | p1@LGR6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LGR6_5end |
Coexpression cluster: | C3921_aorta_gall_heart_skin_pituitary_lung_testicular |
Association with transcript: | 0bp_to_ENST00000420582_5end |
EntrezGene: | LGR6 |
HGNC: | 19719 |
UniProt: | F5H084 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
natural killer cell | 4.87e-09 | 3 |
pro-NK cell | 4.87e-09 | 3 |
germ line cell | 2.58e-07 | 7 |
germ cell | 2.58e-07 | 7 |