FFCP PHASE1:Hg19::chr1:3371133..3371159,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=27237 | |EntrezGene=27237 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=15515 | |HGNC=15515 | ||
|TSSclassifier=strong | |||
|UniProt=B3KTS4,Q5VV41 | |UniProt=B3KTS4,Q5VV41 | ||
|association_with_transcript=0bp_to_NM_014448,uc001akg.3_5end | |association_with_transcript=0bp_to_NM_014448,uc001akg.3_5end | ||
|cluster_id=chr1:3371133..3371159,+ | |||
|description=CAGE_peak_3_at_ARHGEF16_5end | |description=CAGE_peak_3_at_ARHGEF16_5end | ||
|id=chr1:3371133..3371159,+ | |id=chr1:3371133..3371159,+ | ||
|ontology_enrichment_celltype=CL:0000066!6.63e-33!254;CL:0000223!2.31e-17!59;CL:0002076!4.11e-16!43;CL:0002368!1.47e-09!13;CL:0002251!2.13e-07!21;CL:0002202!8.34e-07!9;CL:0002632!8.34e-07!9;CL:0000082!9.84e-07!19 | |ontology_enrichment_celltype=CL:0000066!6.63e-33!254;CL:0000223!2.31e-17!59;CL:0002076!4.11e-16!43;CL:0002368!1.47e-09!13;CL:0002251!2.13e-07!21;CL:0002202!8.34e-07!9;CL:0002632!8.34e-07!9;CL:0000082!9.84e-07!19 | ||
|ontology_enrichment_celltype_v019=CL:0002368;2.01e-13;13!CL:0002076;1.50e-11;42!CL:0002202;7.17e-09;9!CL:0002632;7.17e-09;9!CL:1000507;3.09e-07;10!CL:1000494;3.09e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,9.01e-20,253;CL:0002076,2.15e-14,42;CL:0002368,1.49e-13,13;CL:0000223,3.65e-12,58;CL:0002202,7.12e-09,9;CL:0002632,7.12e-09,9;CL:1000507,4.86e-07,10;CL:1000494,4.86e-07,10 | |||
|ontology_enrichment_development_v019=UBERON:0006595;5.61e-08;86!CL:0000223;2.67e-07;58 | |||
|ontology_enrichment_disease=DOID:305!2.47e-32!106;DOID:0050687!6.09e-24!143;DOID:162!2.19e-09!235;DOID:14566!5.58e-09!239;DOID:1749!7.58e-09!14;DOID:299!2.47e-08!25 | |||
|ontology_enrichment_disease_v019=DOID:305;1.29e-07;106!DOID:1749;1.39e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,5.94e-21,106;DOID:0050687,1.04e-15,143;DOID:1749,1.23e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.90e-30!169;UBERON:0000925!2.90e-30!169;UBERON:0006595!2.90e-30!169;UBERON:0001007!1.77e-26!155;UBERON:0001555!1.77e-26!155;UBERON:0007026!1.77e-26!155;UBERON:0004921!1.83e-25!129;UBERON:0004185!1.83e-25!129;UBERON:0000077!1.13e-21!130;UBERON:0001004!5.43e-18!72;UBERON:0001041!6.85e-18!98;UBERON:0000065!1.31e-16!53;UBERON:0000466!2.43e-16!126;UBERON:0008947!1.85e-14!38;UBERON:0003258!1.85e-14!38;UBERON:0000464!2.29e-14!104;UBERON:0005177!2.30e-14!107;UBERON:0005911!5.90e-14!82;UBERON:0000072!9.19e-13!46;UBERON:0000062!1.71e-11!511;UBERON:0009569!7.48e-11!113;UBERON:0005153!1.59e-10!37;UBERON:0001008!2.66e-10!45;UBERON:0003104!4.20e-10!238;UBERON:0009142!4.20e-10!238;UBERON:0006554!8.86e-10!44;UBERON:0001048!9.80e-10!168;UBERON:0005178!2.05e-09!34;UBERON:0002224!2.05e-09!34;UBERON:0000064!5.46e-09!219;UBERON:0000481!5.97e-09!347;UBERON:0005181!6.35e-09!35;UBERON:0005157!8.78e-09!51;UBERON:0003064!2.86e-08!37;UBERON:0002048!4.09e-08!22;UBERON:0000117!4.09e-08!22;UBERON:0000171!4.09e-08!22;UBERON:0000170!4.09e-08!22;UBERON:0005597!4.09e-08!22;UBERON:0000118!4.09e-08!22;UBERON:0000063!5.92e-08!97;UBERON:0000058!8.54e-08!26;UBERON:0000922!2.95e-07!612;UBERON:0005172!3.71e-07!55;UBERON:0005173!3.71e-07!55;UBERON:0002530!4.18e-07!59;UBERON:0005409!7.36e-07!35;UBERON:0002553!7.39e-07!70;UBERON:0000161!7.91e-07!35;UBERON:0005156!8.59e-07!59;UBERON:0000990!8.59e-07!59;UBERON:0004807!9.49e-07!28;UBERON:0004802!9.84e-07!19;UBERON:0000115!9.84e-07!19 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;5.67e-10;33!UBERON:0000065;5.76e-10;44!UBERON:0005409;6.95e-10;22!UBERON:0000160;2.80e-09;17!UBERON:0005178;3.12e-08;34!UBERON:0002224;3.12e-08;34!UBERON:0000072;1.32e-07;37!UBERON:0000058;2.18e-07;10!UBERON:0005911;2.51e-07;36!UBERON:0004211;3.09e-07;10!UBERON:0009773;3.09e-07;10!UBERON:0001231;3.09e-07;10!UBERON:0004810;3.09e-07;10!UBERON:0005181;3.35e-07;35!UBERON:0002048;3.38e-07;22!UBERON:0004807;3.38e-07;22!UBERON:0000117;3.38e-07;22!UBERON:0000171;3.38e-07;22!UBERON:0000170;3.38e-07;22!UBERON:0006554;3.41e-07;30!UBERON:0001008;3.41e-07;30 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,2.77e-22,160;UBERON:0000925,2.77e-22,160;UBERON:0006595,2.77e-22,160;UBERON:0001007,4.48e-19,145;UBERON:0001555,4.48e-19,145;UBERON:0007026,4.48e-19,145;UBERON:0004921,1.04e-18,118;UBERON:0005177,3.57e-13,101;UBERON:0000065,6.75e-13,54;UBERON:0001004,3.76e-12,74;UBERON:0001041,2.33e-11,87;UBERON:0008947,1.32e-10,38;UBERON:0003258,1.32e-10,38;UBERON:0009569,4.22e-10,112;UBERON:0005911,5.32e-10,82;UBERON:0000160,9.41e-10,17;UBERON:0005178,7.65e-09,34;UBERON:0002224,7.65e-09,34;UBERON:0000072,9.64e-09,47;UBERON:0005409,1.06e-08,25;UBERON:0005181,1.79e-08,35;UBERON:0001008,2.89e-08,48;UBERON:0002113,1.24e-07,26;UBERON:0003918,1.24e-07,26;UBERON:0011143,1.24e-07,26;UBERON:0005095,1.24e-07,26;UBERON:0007687,1.24e-07,26;UBERON:0006554,1.31e-07,47;UBERON:0002048,3.65e-07,22;UBERON:0000117,3.65e-07,22;UBERON:0000171,3.65e-07,22;UBERON:0000170,3.65e-07,22;UBERON:0005597,3.65e-07,22;UBERON:0000118,3.65e-07,22;UBERON:0004810,4.86e-07,10;UBERON:0000489,5.65e-07,31;UBERON:0000915,7.16e-07,52;UBERON:0005153,7.74e-07,37 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,2.21160542851358,4.88460817580699,0.436882744260345,0.527533956456907,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.59710612239464,2.71085326900425,2.58827807116751,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.44076983047484,2.5500670180478,4.82019775619758,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.74437620857014,0,0,0,0,0,0,1.06748995729705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.966304265816484,1.36373060295417,1.72082757233402,0.609868530647977,0.265059536642971,0.580969714347592,0.207322110030741,0.504641701751257,0.36497735907583,0,0,0,0,0,1.65629520055781,1.01150814046861,0.723033089650446,1.65440959098591,0.653638332277218,0.71181185733329,1.07865046528132,0.588664395376038,1.53898862778556,0,0,0,0,0,0.982827216677626,0.590789906681404,0,1.47586126251736,0,0.878002283269004,0,2.01057944823262,0.740707561268237,0,0,0,0,0,0,0,0,0,2.57545848628462,0,0,0,0,0,0.283550194484773,0.179117045405697,1.16253575405585,0.766765358330422,0,0,0,0.144119953416961,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0.725156697549733,0.802025881213139,3.31491560169227,0,0,0,1.35359883872224,0.693138033939733,3.92174884588428,2.92278449306521,0.422206515571503,0,0,0,0,0.270946437543853,1.00337954770971,1.27438136522519,2.49322802678617,1.34324852833307,0,0,0,0,0.325378394664303,0.9273691048295,0,0.247528499761764,1.14853107599234,0.650060246036521,0,0,0,0,0,0,0,0,0,1.32227932288782,1.34533047155574,1.53135254993501,1.92199783625545,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.35667105148125,0,0,0,0,0,0.962221127255121,3.35151137767894,1.08890984861323,1.69458841398202,0.43050537267123,1.68471475667626,1.33029046061003,0.459446800413919,0,0,0,0,0,0,0,0,0.427296284509893,0,3.67560323971548,0,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0.307240764308458,0,0,0,0,0,0,0,0,1.8714054040822,0,0.121360521749513,0,0,3.58116727106535,2.37571744666111,1.53580351049616,0,0,0,0,0.63337622438398,0.398495976502139,1.93398740871803,2.26739473068848,0,0,0,1.25815691606258,1.61119057208048,0,0.0986434056369336,0,0,0,0.0927680981618513,0,1.04171104434093,5.24759999977174,0.724999575434793,1.82069517256799,1.77977555204936,4.72775363535873,1.03423011972439,0,0,0,0,0,0.110579259931225,0.295547618953547,0,1.0893846351899,0.697118721393016,0.769502585037971,0,3.68902247020896,0.897576444097721,6.51884231532048,2.87101043758728,2.1983422416447,3.73124343213044,0,0.156980256395025,0,0,0,0,0,0,0.210998064528027,0.816164040795739,1.97894300007517,0,5.97157158647103,4.24596309616028,4.27721101453538,0,0,0,0.067401132980677,0,0,0,2.15231080825299,0,3.55125962564451,2.41981432097328,0,0.063186579628488,0,0.207376382794494,0.664653872707185,0,0,0,0.853828638089378,0,0.520679215005393,1.56787835863004,2.17648016451006,1.22308667769421,0,1.16107597546902,1.16942907337897,1.06750094169172,2.71569246167574,0,1.35588444468319,0,0,0,2.54216797555244,0.320635281006135,3.20179492109029,0.599428828746391,3.02589876023623,0,0,0.720273989940749,0,3.06402245001834,0,0,0,0,0,0.273810757783986,0,0,0,0,0,0,0.798716001995964,0,0,0,0,6.98975697164723,0.393915911536118,0.412079291905832,0.26961417541674,0.196854963029498,0,0,0,0.803765742325096,0.550157746388935,0.415440338029185,0,0,0,1.67717343799633,1.26089131678717,1.78345599658994,0.105600336519406,0.179287339332845,0.959575986597226,0,0,0,0,0,0,0,0,0,0,1.17241786942466,2.65013777824443,0.129282956361551,0,0,2.11444506695002,1.06787412567695,0.314408610199332,1.24271716604159,0,0,0,1.27668251554036,0.544017803369474,0,0,0.327872630709804,2.82697373250422,0,0.122026264901963,0.1251909307065,0,0,0.0620964029413835,0,0.999843263696853,0,0,0,0.468334905806882,0.724605143054126,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.643324774124777,0,0,0.231522474323834,0,0,0,0.438568099157414,0,0,0.168942440653073,0.512483037175893,0.345430341731199,0,0,0,0,0,0,0,1.90180911022764,0,0.106691729694141,0,0,0,4.05650572386389,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.27592034051333,0.471878893390961,0.917142992608395,1.38630799380406,0,0,0,0.0752103283492573,0,1.56302802246618,2.61906694481422,0,2.21784129325568,0.0675375846183947,0,0,0,0,0.548257766857182,0.992422356778588,0,1.27762427639595,0.535701835878287,0,0.606965604236632,2.04895972216168,1.77404740325278,0,0,0.271878931907327,0,0.827356886187777,2.11339663594931,0.549451649953598,0,1.96190514319652,0.913158720509496,0,1.43325506366115,0.214429632529969,0,0.23248285073625,0.173858272302579,0,0.207216164163037,0,0,0.430227358820278,0.11833200073056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| ||
|short_description=p3@ARHGEF16 | |short_description=p3@ARHGEF16 | ||
}} | }} |
Latest revision as of 17:00, 17 September 2015
Short description: | p3@ARHGEF16 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ARHGEF16_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_NM_014448, uc001akg.3_5end |
EntrezGene: | ARHGEF16 |
HGNC: | 15515 |
UniProt: | B3KTS4Q5VV41 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 9.01e-20 | 253 |
endo-epithelial cell | 2.15e-14 | 42 |
respiratory epithelial cell | 1.49e-13 | 13 |
endodermal cell | 3.65e-12 | 58 |
epithelial cell of tracheobronchial tree | 7.12e-09 | 9 |
epithelial cell of lower respiratory tract | 7.12e-09 | 9 |
kidney tubule cell | 4.86e-07 | 10 |
nephron tubule epithelial cell | 4.86e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 5.94e-21 | 106 |
cell type cancer | 1.04e-15 | 143 |
squamous cell carcinoma | 1.23e-07 | 14 |