FFCP PHASE1:Hg19::chr1:76081864..76081888,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=204962 | |EntrezGene=204962 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=28524 | |HGNC=28524 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-170bp_to_uc010ora.1_5end | |association_with_transcript=-170bp_to_uc010ora.1_5end | ||
|cluster_id=chr1:76081864..76081888,- | |||
|description=CAGE_peak_3_at_SLC44A5_5end | |description=CAGE_peak_3_at_SLC44A5_5end | ||
|id=chr1:76081864..76081888,- | |id=chr1:76081864..76081888,- | ||
|ontology_enrichment_celltype=CL:1000413!1.09e-08!9;CL:0002544!1.74e-08!6;CL:0002139!1.97e-08!24;CL:0000047!9.79e-08!8;CL:0000071!1.68e-07!18;CL:0002546!1.68e-07!18;CL:0002319!5.23e-07!25 | |ontology_enrichment_celltype=CL:1000413!1.09e-08!9;CL:0002544!1.74e-08!6;CL:0002139!1.97e-08!24;CL:0000047!9.79e-08!8;CL:0000071!1.68e-07!18;CL:0002546!1.68e-07!18;CL:0002319!5.23e-07!25 | ||
|ontology_enrichment_celltype_v019=CL:0000540;3.46e-09;6!CL:0000404;3.46e-09;6!CL:0000167;4.30e-07;1!CL:0000164;4.30e-07;1!CL:0000502;4.30e-07;1!CL:0000172;4.30e-07;1!CL:0000173;4.30e-07;1!CL:0002319;4.48e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,1.01e-11,8;CL:0000540,3.51e-09,6;CL:0000031,3.51e-09,6;CL:0000404,3.51e-09,6;CL:0000167,3.95e-07,1;CL:0000164,3.95e-07,1;CL:0000502,3.95e-07,1;CL:0000172,3.95e-07,1;CL:0000173,3.95e-07,1;CL:0002351,3.95e-07,1;CL:0002319,4.41e-07,25 | |||
|ontology_enrichment_development_v019=CL:0000031;3.46e-09;6!CL:0002351;4.30e-07;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:171;3.88e-09;10!DOID:169;6.92e-09;6!DOID:4430;4.30e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:171,3.85e-09,10;DOID:169,6.56e-09,6;DOID:4430,3.95e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0000073!1.39e-37!94;UBERON:0001016!1.39e-37!94;UBERON:0005743!8.26e-37!86;UBERON:0001017!5.74e-35!82;UBERON:0001049!1.06e-26!57;UBERON:0005068!1.06e-26!57;UBERON:0006241!1.06e-26!57;UBERON:0007135!1.06e-26!57;UBERON:0000956!5.21e-26!25;UBERON:0000203!5.21e-26!25;UBERON:0003075!5.23e-26!86;UBERON:0007284!5.23e-26!86;UBERON:0001893!8.46e-26!34;UBERON:0002346!1.51e-25!90;UBERON:0000955!1.05e-24!69;UBERON:0006238!1.05e-24!69;UBERON:0002791!1.13e-24!33;UBERON:0001869!2.37e-24!32;UBERON:0002020!9.16e-24!34;UBERON:0003528!9.16e-24!34;UBERON:0001950!1.43e-23!20;UBERON:0002619!4.05e-23!22;UBERON:0002780!7.20e-23!41;UBERON:0001890!7.20e-23!41;UBERON:0006240!7.20e-23!41;UBERON:0003080!4.42e-22!42;UBERON:0003056!3.02e-21!61;UBERON:0002616!6.13e-21!59;UBERON:0000924!8.25e-18!173;UBERON:0006601!8.25e-18!173;UBERON:0004121!8.79e-18!169;UBERON:0000025!7.67e-16!194;UBERON:0000153!3.29e-14!129;UBERON:0007811!3.29e-14!129;UBERON:0000033!3.77e-14!123;UBERON:0007023!5.33e-12!115;UBERON:0004111!6.73e-12!241;UBERON:0000483!2.58e-10!309;UBERON:0000477!5.32e-10!286;UBERON:0000119!5.43e-10!312;UBERON:0003915!1.09e-08!9;UBERON:0004700!1.09e-08!9;UBERON:0001917!1.09e-08!9;UBERON:0000922!1.65e-08!612;UBERON:0000200!4.23e-08!6;UBERON:0001871!4.63e-08!7;UBERON:0002021!8.59e-08!5;UBERON:0001872!1.22e-07!5;UBERON:0001986!1.68e-07!18;UBERON:0004638!1.68e-07!18;UBERON:0004852!1.68e-07!18;UBERON:0000468!2.31e-07!659;UBERON:0002050!3.53e-07!605;UBERON:0005423!3.53e-07!605;UBERON:0000923!7.31e-07!604;UBERON:0005291!7.31e-07!604;UBERON:0006598!7.31e-07!604;UBERON:0002532!7.31e-07!604 | |||
|ontology_enrichment_uberon_v019=UBERON:0001950;1.25e-19;20!UBERON:0000956;2.92e-19;25!UBERON:0000203;2.92e-19;25!UBERON:0002619;8.60e-18;22!UBERON:0002021;1.70e-17;5!UBERON:0001869;1.11e-13;32!UBERON:0002791;1.25e-13;32!UBERON:0001893;8.24e-13;34!UBERON:0003528;5.15e-12;34!UBERON:0002020;5.15e-12;34!UBERON:0001872;1.40e-10;5!UBERON:0002780;3.39e-09;41!UBERON:0001890;3.39e-09;41!UBERON:0001017;6.94e-08;75!UBERON:0001016;5.24e-07;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,8.87e-22,89;UBERON:0001017,8.63e-20,81;UBERON:0001950,1.60e-19,20;UBERON:0000956,3.51e-19,25;UBERON:0000203,3.51e-19,25;UBERON:0002619,1.08e-17,22;UBERON:0002021,1.53e-17,5;UBERON:0002791,9.97e-15,32;UBERON:0001869,9.97e-15,32;UBERON:0003528,8.79e-14,34;UBERON:0002020,8.79e-14,34;UBERON:0001893,8.79e-14,34;UBERON:0004121,9.72e-12,171;UBERON:0000924,9.72e-12,171;UBERON:0006601,9.72e-12,171;UBERON:0002780,3.48e-11,41;UBERON:0001890,3.48e-11,41;UBERON:0003080,3.48e-11,41;UBERON:0006240,3.48e-11,41;UBERON:0000955,1.57e-10,68;UBERON:0006238,1.57e-10,68;UBERON:0001872,1.85e-10,5;UBERON:0011216,8.39e-10,223;UBERON:0001049,1.66e-09,56;UBERON:0005068,1.66e-09,56;UBERON:0006241,1.66e-09,56;UBERON:0007135,1.66e-09,56;UBERON:0003056,1.61e-08,61;UBERON:0000073,2.64e-08,53;UBERON:0002616,2.64e-08,53;UBERON:0002346,5.73e-08,86;UBERON:0003075,4.30e-07,82;UBERON:0007284,4.30e-07,82 | |||
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| ||
|short_description=p3@SLC44A5 | |short_description=p3@SLC44A5 | ||
}} | }} |
Latest revision as of 05:54, 19 September 2015
Short description: | p3@SLC44A5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SLC44A5_5end |
Coexpression cluster: | NA |
Association with transcript: | -170bp_to_uc010ora.1_5end |
EntrezGene: | SLC44A5 |
HGNC: | 28524 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 1.01e-11 | 8 |
neuron | 3.51e-09 | 6 |
neuroblast | 3.51e-09 | 6 |
electrically signaling cell | 3.51e-09 | 6 |
peptide hormone secreting cell | 3.95e-07 | 1 |
enteroendocrine cell | 3.95e-07 | 1 |
type D enteroendocrine cell | 3.95e-07 | 1 |
somatostatin secreting cell | 3.95e-07 | 1 |
pancreatic D cell | 3.95e-07 | 1 |
progenitor cell of endocrine pancreas | 3.95e-07 | 1 |
neural cell | 4.41e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
nervous system | 8.87e-22 | 89 |
central nervous system | 8.63e-20 | 81 |
neocortex | 1.60e-19 | 20 |
cerebral cortex | 3.51e-19 | 25 |
pallium | 3.51e-19 | 25 |
regional part of cerebral cortex | 1.08e-17 | 22 |
occipital lobe | 1.53e-17 | 5 |
regional part of telencephalon | 9.97e-15 | 32 |
cerebral hemisphere | 9.97e-15 | 32 |
brain grey matter | 8.79e-14 | 34 |
gray matter | 8.79e-14 | 34 |
telencephalon | 8.79e-14 | 34 |
ectoderm-derived structure | 9.72e-12 | 171 |
ectoderm | 9.72e-12 | 171 |
presumptive ectoderm | 9.72e-12 | 171 |
regional part of forebrain | 3.48e-11 | 41 |
forebrain | 3.48e-11 | 41 |
anterior neural tube | 3.48e-11 | 41 |
future forebrain | 3.48e-11 | 41 |
brain | 1.57e-10 | 68 |
future brain | 1.57e-10 | 68 |
parietal lobe | 1.85e-10 | 5 |
organ system subdivision | 8.39e-10 | 223 |
neural tube | 1.66e-09 | 56 |
neural rod | 1.66e-09 | 56 |
future spinal cord | 1.66e-09 | 56 |
neural keel | 1.66e-09 | 56 |
pre-chordal neural plate | 1.61e-08 | 61 |
regional part of nervous system | 2.64e-08 | 53 |
regional part of brain | 2.64e-08 | 53 |
neurectoderm | 5.73e-08 | 86 |
neural plate | 4.30e-07 | 82 |
presumptive neural plate | 4.30e-07 | 82 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 3.85e-09 | 10 |
neuroendocrine tumor | 6.56e-09 | 6 |
somatostatinoma | 3.95e-07 | 1 |