FFCP PHASE1:Hg19::chr17:8079648..8079737,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=84314 | |EntrezGene=84314 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28128 | |HGNC=28128 | ||
|TSSclassifier=strong | |||
|UniProt=Q6UX40,B2RDT5,B3KNL7 | |UniProt=Q6UX40,B2RDT5,B3KNL7 | ||
|association_with_transcript=0bp_to_ENST00000316425,ENST00000417073,ENST00000437139,ENST00000449985,ENST00000526920,ENST00000529756,ENST00000532998,ENST00000533070,NM_032354,NM_183065,uc002gkg.3,uc002gkh.3,uc002gki.3,uc002gkj.3,uc002gkk.2_5end | |association_with_transcript=0bp_to_ENST00000316425,ENST00000417073,ENST00000437139,ENST00000449985,ENST00000526920,ENST00000529756,ENST00000532998,ENST00000533070,NM_032354,NM_183065,uc002gkg.3,uc002gkh.3,uc002gki.3,uc002gkj.3,uc002gkk.2_5end | ||
|cluster_id=chr17:8079648..8079737,- | |||
|description=CAGE_peak_1_at_TMEM107_5end | |description=CAGE_peak_1_at_TMEM107_5end | ||
|id=chr17:8079648..8079737,- | |id=chr17:8079648..8079737,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!2.13e-16!57;UBERON:0005068!2.13e-16!57;UBERON:0006241!2.13e-16!57;UBERON:0007135!2.13e-16!57;UBERON:0003056!2.04e-15!61;UBERON:0003080!2.07e-15!42;UBERON:0000955!2.87e-15!69;UBERON:0006238!2.87e-15!69;UBERON:0002780!3.62e-15!41;UBERON:0001890!3.62e-15!41;UBERON:0006240!3.62e-15!41;UBERON:0003075!5.60e-15!86;UBERON:0007284!5.60e-15!86;UBERON:0002346!1.82e-14!90;UBERON:0001017!2.71e-14!82;UBERON:0001869!4.01e-14!32;UBERON:0000064!4.94e-14!219;UBERON:0005743!6.11e-14!86;UBERON:0002616!1.50e-13!59;UBERON:0001893!2.52e-13!34;UBERON:0002020!5.36e-13!34;UBERON:0003528!5.36e-13!34;UBERON:0002791!5.73e-13!33;UBERON:0000956!5.48e-12!25;UBERON:0000203!5.48e-12!25;UBERON:0000073!2.01e-11!94;UBERON:0001016!2.01e-11!94;UBERON:0001950!4.09e-11!20;UBERON:0002619!6.76e-11!22;UBERON:0000153!1.75e-09!129;UBERON:0007811!1.75e-09!129;UBERON:0000033!3.15e-09!123;UBERON:0000025!1.83e-08!194;UBERON:0000119!4.97e-08!312;UBERON:0000483!1.08e-07!309;UBERON:0004121!5.45e-07!169;UBERON:0000477!6.66e-07!286;UBERON:0000924!6.71e-07!173;UBERON:0006601!6.71e-07!173 | |ontology_enrichment_uberon=UBERON:0001049!2.13e-16!57;UBERON:0005068!2.13e-16!57;UBERON:0006241!2.13e-16!57;UBERON:0007135!2.13e-16!57;UBERON:0003056!2.04e-15!61;UBERON:0003080!2.07e-15!42;UBERON:0000955!2.87e-15!69;UBERON:0006238!2.87e-15!69;UBERON:0002780!3.62e-15!41;UBERON:0001890!3.62e-15!41;UBERON:0006240!3.62e-15!41;UBERON:0003075!5.60e-15!86;UBERON:0007284!5.60e-15!86;UBERON:0002346!1.82e-14!90;UBERON:0001017!2.71e-14!82;UBERON:0001869!4.01e-14!32;UBERON:0000064!4.94e-14!219;UBERON:0005743!6.11e-14!86;UBERON:0002616!1.50e-13!59;UBERON:0001893!2.52e-13!34;UBERON:0002020!5.36e-13!34;UBERON:0003528!5.36e-13!34;UBERON:0002791!5.73e-13!33;UBERON:0000956!5.48e-12!25;UBERON:0000203!5.48e-12!25;UBERON:0000073!2.01e-11!94;UBERON:0001016!2.01e-11!94;UBERON:0001950!4.09e-11!20;UBERON:0002619!6.76e-11!22;UBERON:0000153!1.75e-09!129;UBERON:0007811!1.75e-09!129;UBERON:0000033!3.15e-09!123;UBERON:0000025!1.83e-08!194;UBERON:0000119!4.97e-08!312;UBERON:0000483!1.08e-07!309;UBERON:0004121!5.45e-07!169;UBERON:0000477!6.66e-07!286;UBERON:0000924!6.71e-07!173;UBERON:0006601!6.71e-07!173 | ||
|ontology_enrichment_uberon_v019=UBERON:0001869;3.36e-13;32!UBERON:0002791;2.54e-12;32!UBERON:0001893;4.11e-12;34!UBERON:0000956;5.30e-12;25!UBERON:0000203;5.30e-12;25!UBERON:0003528;5.91e-12;34!UBERON:0002020;5.91e-12;34!UBERON:0001950;3.99e-11;20!UBERON:0002780;5.65e-11;41!UBERON:0001890;5.65e-11;41!UBERON:0002619;7.31e-11;22!UBERON:0000073;3.29e-09;53!UBERON:0002616;3.29e-09;53!UBERON:0000955;5.49e-08;68 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,3.84e-16,56;UBERON:0005068,3.84e-16,56;UBERON:0006241,3.84e-16,56;UBERON:0007135,3.84e-16,56;UBERON:0000073,9.03e-16,53;UBERON:0002616,9.03e-16,53;UBERON:0002780,3.62e-15,41;UBERON:0001890,3.62e-15,41;UBERON:0003080,3.62e-15,41;UBERON:0006240,3.62e-15,41;UBERON:0000955,5.16e-15,68;UBERON:0006238,5.16e-15,68;UBERON:0003056,1.07e-14,61;UBERON:0003075,1.15e-14,82;UBERON:0007284,1.15e-14,82;UBERON:0002346,3.87e-14,86;UBERON:0001869,4.01e-14,32;UBERON:0001017,4.81e-14,81;UBERON:0001893,2.52e-13,34;UBERON:0002791,4.62e-13,32;UBERON:0003528,5.36e-13,34;UBERON:0002020,5.36e-13,34;UBERON:0000956,5.48e-12,25;UBERON:0000203,5.48e-12,25;UBERON:0001016,2.03e-11,89;UBERON:0001950,4.09e-11,20;UBERON:0002619,6.76e-11,22;UBERON:0010371,9.56e-11,104;UBERON:0010314,2.41e-10,132;UBERON:0000025,1.44e-08,192;UBERON:0000119,9.26e-08,309;UBERON:0000483,1.98e-07,306;UBERON:0004121,8.13e-07,171;UBERON:0000924,8.13e-07,171;UBERON:0006601,8.13e-07,171 | |||
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| ||
|short_description=p1@TMEM107 | |short_description=p1@TMEM107 | ||
}} | }} |
Latest revision as of 14:07, 18 September 2015
Short description: | p1@TMEM107 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TMEM107_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000316425, ENST00000417073, ENST00000437139, ENST00000449985, ENST00000526920, ENST00000529756, ENST00000532998, ENST00000533070, NM_032354, NM_183065, uc002gkg.3, uc002gkh.3, uc002gki.3, uc002gkj.3, uc002gkk.2_5end |
EntrezGene: | TMEM107 |
HGNC: | 28128 |
UniProt: | Q6UX40B2RDT5B3KNL7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural tube | 3.84e-16 | 56 |
neural rod | 3.84e-16 | 56 |
future spinal cord | 3.84e-16 | 56 |
neural keel | 3.84e-16 | 56 |
regional part of nervous system | 9.03e-16 | 53 |
regional part of brain | 9.03e-16 | 53 |
regional part of forebrain | 3.62e-15 | 41 |
forebrain | 3.62e-15 | 41 |
anterior neural tube | 3.62e-15 | 41 |
future forebrain | 3.62e-15 | 41 |
brain | 5.16e-15 | 68 |
future brain | 5.16e-15 | 68 |
pre-chordal neural plate | 1.07e-14 | 61 |
neural plate | 1.15e-14 | 82 |
presumptive neural plate | 1.15e-14 | 82 |
neurectoderm | 3.87e-14 | 86 |
cerebral hemisphere | 4.01e-14 | 32 |
central nervous system | 4.81e-14 | 81 |
telencephalon | 2.52e-13 | 34 |
regional part of telencephalon | 4.62e-13 | 32 |
brain grey matter | 5.36e-13 | 34 |
gray matter | 5.36e-13 | 34 |
cerebral cortex | 5.48e-12 | 25 |
pallium | 5.48e-12 | 25 |
nervous system | 2.03e-11 | 89 |
neocortex | 4.09e-11 | 20 |
regional part of cerebral cortex | 6.76e-11 | 22 |
ecto-epithelium | 9.56e-11 | 104 |
structure with developmental contribution from neural crest | 2.41e-10 | 132 |
tube | 1.44e-08 | 192 |
cell layer | 9.26e-08 | 309 |
epithelium | 1.98e-07 | 306 |
ectoderm-derived structure | 8.13e-07 | 171 |
ectoderm | 8.13e-07 | 171 |
presumptive ectoderm | 8.13e-07 | 171 |