FFCP PHASE1:Hg19::chr19:11201287..11201316,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3949 | |EntrezGene=3949 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6547 | |HGNC=6547 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=12bp_to_BX648281_5end | |association_with_transcript=12bp_to_BX648281_5end | ||
|cluster_id=chr19:11201287..11201316,+ | |||
|coexpression_cluster_id=C151 | |||
|description=CAGE_peak_9_at_LDLR_5end | |description=CAGE_peak_9_at_LDLR_5end | ||
|id=chr19:11201287..11201316,+ | |id=chr19:11201287..11201316,+ | ||
|ontology_enrichment_celltype=CL:0002057!9.43e-26!42;CL:0000860!1.04e-24!45;CL:0000738!1.74e-19!140;CL:0002031!2.58e-17!124;CL:0000766!3.65e-16!76;CL:0002087!4.83e-16!119;CL:0000557!2.63e-15!71;CL:0000037!3.35e-15!172;CL:0000566!3.35e-15!172;CL:0002032!1.57e-14!165;CL:0000837!1.57e-14!165;CL:0000988!5.80e-14!182;CL:0002009!1.27e-13!65;CL:0000839!7.93e-13!70;CL:0002194!1.29e-12!63;CL:0000576!1.29e-12!63;CL:0000040!1.29e-12!63;CL:0000559!1.29e-12!63;CL:0000763!1.53e-10!112;CL:0000049!1.53e-10!112;CL:0000084!1.89e-07!25;CL:0000827!1.89e-07!25;CL:0000791!1.90e-07!18;CL:0000789!1.90e-07!18;CL:0002420!1.90e-07!18;CL:0002419!1.90e-07!18;CL:0000790!1.90e-07!18 | |ontology_enrichment_celltype=CL:0002057!9.43e-26!42;CL:0000860!1.04e-24!45;CL:0000738!1.74e-19!140;CL:0002031!2.58e-17!124;CL:0000766!3.65e-16!76;CL:0002087!4.83e-16!119;CL:0000557!2.63e-15!71;CL:0000037!3.35e-15!172;CL:0000566!3.35e-15!172;CL:0002032!1.57e-14!165;CL:0000837!1.57e-14!165;CL:0000988!5.80e-14!182;CL:0002009!1.27e-13!65;CL:0000839!7.93e-13!70;CL:0002194!1.29e-12!63;CL:0000576!1.29e-12!63;CL:0000040!1.29e-12!63;CL:0000559!1.29e-12!63;CL:0000763!1.53e-10!112;CL:0000049!1.53e-10!112;CL:0000084!1.89e-07!25;CL:0000827!1.89e-07!25;CL:0000791!1.90e-07!18;CL:0000789!1.90e-07!18;CL:0002420!1.90e-07!18;CL:0002419!1.90e-07!18;CL:0000790!1.90e-07!18 | ||
|ontology_enrichment_celltype_v019=CL:0000860;3.04e-44;33!CL:0002057;3.04e-44;33!CL:0000473;3.63e-31;39!CL:0000234;3.63e-31;39!CL:0000576;1.31e-23;48!CL:0000766;7.44e-20;69!CL:0000624;2.69e-15;6!CL:0002087;1.50e-12;104!CL:0000791;4.40e-12;18!CL:0000789;4.40e-12;18!CL:0002419;4.40e-12;18!CL:0000763;1.02e-10;100!CL:0000094;1.20e-10;8!CL:0000084;1.01e-09;25!CL:0000738;1.19e-09;136!CL:0000898;2.67e-08;3!CL:0000623;3.13e-08;3!CL:0000767;5.23e-08;3!CL:0000081;1.59e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.21e-46,42;CL:0002057,3.21e-46,42;CL:0000766,1.46e-41,72;CL:0000738,5.33e-41,136;CL:0000473,2.68e-39,48;CL:0000234,2.68e-39,48;CL:0000557,2.85e-35,67;CL:0002031,7.03e-35,120;CL:0000037,3.46e-33,168;CL:0002032,2.37e-32,161;CL:0000837,2.37e-32,161;CL:0002087,1.13e-31,115;CL:0000839,1.33e-31,66;CL:0000988,9.79e-31,177;CL:0002009,1.43e-30,61;CL:0002194,1.24e-29,59;CL:0000576,1.24e-29,59;CL:0000040,1.24e-29,59;CL:0000559,1.24e-29,59;CL:0000763,3.92e-27,108;CL:0000049,3.92e-27,108;CL:0000624,2.25e-15,6;CL:0000791,3.60e-12,18;CL:0000789,3.60e-12,18;CL:0002420,3.60e-12,18;CL:0002419,3.60e-12,18;CL:0000790,3.60e-12,18;CL:0000134,3.62e-11,354;CL:0000094,1.08e-10,8;CL:0002320,1.16e-10,361;CL:0000084,1.00e-09,25;CL:0000827,1.00e-09,25;CL:0000219,6.65e-09,386;CL:0000898,1.80e-08,3;CL:0000623,3.27e-08,3;CL:0000825,3.27e-08,3;CL:0000767,4.82e-08,3;CL:0000081,1.47e-07,11;CL:0000034,4.91e-07,441;CL:0000723,5.86e-07,433;CL:0000048,8.47e-07,427 | |||
|ontology_enrichment_development_v019=CL:0002057;6.93e-34;42!CL:0000790;4.40e-12;18!CL:0000049;3.80e-08;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.03e-15!102;UBERON:0003061!3.03e-15!102;UBERON:0002193!4.15e-14!112;UBERON:0002371!1.42e-13!80;UBERON:0001474!1.19e-11!86;UBERON:0002405!1.05e-10!115;UBERON:0004765!3.08e-08!101;UBERON:0001434!3.08e-08!101 | |ontology_enrichment_uberon=UBERON:0002390!3.03e-15!102;UBERON:0003061!3.03e-15!102;UBERON:0002193!4.15e-14!112;UBERON:0002371!1.42e-13!80;UBERON:0001474!1.19e-11!86;UBERON:0002405!1.05e-10!115;UBERON:0004765!3.08e-08!101;UBERON:0001434!3.08e-08!101 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,6.18e-34,76;UBERON:0001474,1.05e-30,82;UBERON:0002390,6.60e-29,98;UBERON:0003061,6.60e-29,98;UBERON:0002405,1.01e-27,93;UBERON:0004765,4.57e-27,90;UBERON:0002193,3.24e-25,108;UBERON:0001434,2.42e-23,100;UBERON:0003081,1.31e-10,203;UBERON:0002204,4.16e-10,167;UBERON:0002384,5.59e-10,371 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0.261185628199839,0,0.697801167972428,0.218441372130172,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0.410623275218653,0.125542639594803,0.229240217243854,0.0821005894499457,0.157421562627358,3.93364276848904,3.0706351847777,1.54816123316076,0,0.6024118375565,0.369754010166788,0,0.142169232487422,1.76160263600908,0,2.4065333696417,3.68918480216948,0.223915474239924,0,0,2.03557534291391,1.88937971844405,3.15359279544161,2.32429036905685,0.411167888021826,3.71647645074124,2.3015391385772,1.7931249457037,4.49316236788312,9.3081333798887,4.51839278508678,8.12558919566051,2.07066573496865,0.272906150057846,2.47195832889593,7.65209730927256,4.49300637906531,8.95071976118658,1.31940520074686,0.797854630486527,6.39337125799041,6.09439401120026,1.70215567407342,5.60540024096017,3.01498398308092,1.5644487552606,4.77815458351257,3.02699751316684,1.84138817993782,6.64571013625857,0.845021145247767,1.06302149982522,0.838634582033504,0.336985893439485,0.150176892841506,0.803627933485401,0.855038231223746,0.99458338599545,0.182664153764634,0,0,0,0,0,0.574752439954483,0,0,0,0,0.382273228125229,1.32171328579026,0,0,2.16380747125216,6.28817220398664,6.16804496998528,1.00311897234407,1.95553359980154,0.946895611469467,3.89653456815823,2.45103005147382,4.41908861212256,3.98761010250518,1.62482318259009,2.81800903396485,4.68213651215562,0.822189523018381,1.38175008892924,0,2.22429844743091,2.40786745280742,2.09071047609954,0.679856056185397,6.51474839123266,7.21617635513523,4.80737414837055,0.637130828648193,0,0,1.35517607169996,0.127986611154418,0,0.710331756132051,1.64225599384209,0.80642697289893,6.41856469880418,3.91025890483557,0,0,0,0,0,0.144846518960824,0,0,0,0,0.43917392846563,0.0654895377488563,0,0.741568885568859,0,0,0.132957960518865,0,0,0,0.198762407366705,0.860234595106124,0,0,0,0.825354125820202,0,0.258416759169329,0,0.66944122552934,0,0,0,0,0,0.17859945656816,0.44905874525234,0.112611480483322,1.53316637465883,0.949265659568129,0.366403487860815,0,3.87780264148325,0,0,0,0.397227542439656,0.286836620748814,0,0,0,0.24666754841716,0,0,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0.277064115484183,0,0,0,0,0.179389635688862,0,0,0.300091096084402,0,0,0,0.168776332241266,0,0,0,0,0.355009592516614,0,0.169560592310488,0,0.272746120590835,0,0,0,0.116193942869518,0.10366105501537,0,0,0,0.643240938192885,0,0.464367928031979,0,0,0.168584690078102,0,0,0,0,0.134831308160164,0.196221465125346,0,0,0,0,0,0,0,0,0.882926198829301,0,0,0.219500570817251,1.1240175325762,0.100528972411631,0.0925884451585296,0,0,0,0.115930404975077,0,0,0.462985512576611,0,1.58040879591855,0.858486162094873,0,0,0,0,0.16798212819886,0,0.0895585227028483,0.290633938513962,0,0,0.176096868026452,1.65862492432618,1.15295962733569,2.65109110195398,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0.285955987316295,0,0,0,0,0,0,0,0.199945982364114,0,0,0,0,0,0,0.289562613335158,0,0,0.448340575974109,2.1673383622212,4.31255149719035,2.69520376187472,0,0,0,0.167516265334349,0.637938751653163,0,2.99161459204025,2.07207756718018,0.24538298343828,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0.391602314925481,0,0,1.2942852049117,0.74709290462411,0.303127571446259,0,0.604780586659361,0,0.153461973288062,0,0,0,0,0,0,0.177561725313127,0,0,0,0.120859449591622,0.200506470303285,0,0,0,0,0,0.0770153371044148,0,0,0,1.13733384070897,0.340187410553031,0,0,0,0,0,0,0.671624264166535,0,0,0,0,0,0.309123034943167,0,0,0,0,0,0.096670718292122,0,0,0,0,0,0,0,0.165284915360978,0,0.765676274967505,0.50578890427775,0,0.31481234683064,0,0.308033580176089,0.532306030317022,0,0,0,0,0,0.190630193923825,0,0,0.318203247925937,0,0.179872457583315,0,0.117812402345686,0.202182481573316,0,0,0,0,0,0.136499911407986,0,0,0,0,0,0,0,0,0.30982349809975,0,0.143411352204052,0,0.35667105148125,0,0,0,0,0,0.192444225451024,0.670302275535787,0,0.0941438007767792,0.43050537267123,1.68471475667626,0.443430153536676,0,0.507447609232169,0.764637207142375,1.13929437434833,0.238231775457789,0,0,0.540031437238115,0.79312517629427,0,0,0.490080431962063,0,0,0.0711418433484141,0,0,0.191505370132367,0.423347165447766,0,0,0,0,0,0,0.642352300414798,0,0.851692475380653,0.343505344755765,0,0,0,0,0,0,0,0,0,0.18714054040822,0.293016358543788,0,0.334330152832435,0.284136146806413,0,0,0.307160702099232,0,0.281338832821026,0,0.329607748453519,0,0.796991953004279,0.828851746593443,0,0,0.369254416383208,0,0.269605053441981,0,0,0,0,0,0,0.185536196323703,0,0,0.174919999992391,0.724999575434793,0.1137934482855,0.254253650292766,0.236387681767936,0.344743373241465,0,0,0,0.120596438625408,0,0,0,0,0,0.41827123283581,0,0.113942055847001,0,0,0,0.638002319463839,0,0.533034776018635,0,0,0,0,0,0.503464760927528,0,0.317873157960757,0.210998064528027,0.163232808159148,0,0,0,0.176915129006678,0,0.296521128680622,0,0,0,0.802577647298789,0,0,0,0.242780379534093,0,0,0,0.126373159256976,0.450970258243478,0.103688191397247,0,0,0.313932918407225,0,0.284609546029793,0,0,0.293977192243133,0.5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| ||
|short_description=p9@LDLR | |short_description=p9@LDLR | ||
}} | }} |
Latest revision as of 04:17, 25 September 2015
Short description: | p9@LDLR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_LDLR_5end |
Coexpression cluster: | C151_CD14_Natural_Basophils_CD8_Eosinophils_CD4_Mast |
Association with transcript: | 12bp_to_BX648281_5end |
EntrezGene: | LDLR |
HGNC: | 6547 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone marrow | 6.18e-34 | 76 |
bone element | 1.05e-30 | 82 |
hematopoietic system | 6.60e-29 | 98 |
blood island | 6.60e-29 | 98 |
immune system | 1.01e-27 | 93 |
skeletal element | 4.57e-27 | 90 |
hemolymphoid system | 3.24e-25 | 108 |
skeletal system | 2.42e-23 | 100 |
lateral plate mesoderm | 1.31e-10 | 203 |
musculoskeletal system | 4.16e-10 | 167 |
connective tissue | 5.59e-10 | 371 |