FFCP PHASE1:Hg19::chr19:47113368..47113396,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:47113368..47113396,+ | |||
|coexpression_cluster_id=C1456 | |||
|description=CAGE_peak_at_chr19:47113368..47113396,+ | |description=CAGE_peak_at_chr19:47113368..47113396,+ | ||
|id=chr19:47113368..47113396,+ | |id=chr19:47113368..47113396,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!4.19e-18!57;UBERON:0005068!4.19e-18!57;UBERON:0006241!4.19e-18!57;UBERON:0007135!4.19e-18!57;UBERON:0001869!4.79e-16!32;UBERON:0002020!7.05e-16!34;UBERON:0003528!7.05e-16!34;UBERON:0001893!2.78e-15!34;UBERON:0002616!9.55e-15!59;UBERON:0002791!1.04e-14!33;UBERON:0003080!1.78e-14!42;UBERON:0001017!3.67e-14!82;UBERON:0002780!4.54e-14!41;UBERON:0001890!4.54e-14!41;UBERON:0006240!4.54e-14!41;UBERON:0005743!5.07e-14!86;UBERON:0002619!9.24e-14!22;UBERON:0000955!1.17e-12!69;UBERON:0006238!1.17e-12!69;UBERON:0000956!1.20e-12!25;UBERON:0000203!1.20e-12!25;UBERON:0001950!1.44e-12!20;UBERON:0007023!3.88e-11!115;UBERON:0003075!8.88e-11!86;UBERON:0007284!8.88e-11!86;UBERON:0000073!1.48e-10!94;UBERON:0001016!1.48e-10!94;UBERON:0002346!5.48e-10!90;UBERON:0003056!1.20e-09!61;UBERON:0000033!1.33e-07!123;UBERON:0000119!1.80e-07!312;UBERON:0000483!2.66e-07!309;UBERON:0000153!5.65e-07!129;UBERON:0007811!5.65e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;3.69e-18;32!UBERON:0002619;2.03e-17;22!UBERON:0002791;1.01e-16;32!UBERON:0003528;2.03e-16;34!UBERON:0002020;2.03e-16;34!UBERON:0001950;7.49e-16;20!UBERON:0001893;8.40e-16;34!UBERON:0000956;2.91e-15;25!UBERON:0000203;2.91e-15;25!UBERON:0002780;4.22e-12;41!UBERON:0001890;4.22e-12;41!UBERON:0000073;4.66e-10;53!UBERON:0002616;4.66e-10;53!UBERON:0000955;2.05e-07;68!UBERON:0001017;6.18e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,2.29e-20,56;UBERON:0005068,2.29e-20,56;UBERON:0006241,2.29e-20,56;UBERON:0007135,2.29e-20,56;UBERON:0001869,1.16e-19,32;UBERON:0000073,2.63e-19,53;UBERON:0002616,2.63e-19,53;UBERON:0003528,8.61e-19,34;UBERON:0002020,8.61e-19,34;UBERON:0002791,6.67e-18,32;UBERON:0001893,1.09e-17,34;UBERON:0002619,2.72e-17,22;UBERON:0002780,1.62e-16,41;UBERON:0001890,1.62e-16,41;UBERON:0003080,1.62e-16,41;UBERON:0006240,1.62e-16,41;UBERON:0001017,7.78e-16,81;UBERON:0001950,9.39e-16,20;UBERON:0000956,2.76e-15,25;UBERON:0000203,2.76e-15,25;UBERON:0000955,3.38e-14,68;UBERON:0006238,3.38e-14,68;UBERON:0003075,1.38e-13,82;UBERON:0007284,1.38e-13,82;UBERON:0002346,5.39e-13,86;UBERON:0001016,8.48e-13,89;UBERON:0003056,5.83e-11,61;UBERON:0007023,7.11e-11,114;UBERON:0010371,1.03e-10,104;UBERON:0010314,8.61e-10,132;UBERON:0000119,7.84e-08,309;UBERON:0000483,1.01e-07,306;UBERON:0004111,9.60e-07,240 | |||
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| ||
|short_description=p@chr19:47113368..47113396,+ | |short_description=p@chr19:47113368..47113396,+ | ||
}} | }} |
Latest revision as of 15:18, 27 July 2015
Short description: | p@chr19:47113368..47113396, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:47113368..47113396, + |
Coexpression cluster: | C1456_medial_amygdala_brain_hippocampus_occipital_putamen_parietal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural tube | 2.29e-20 | 56 |
neural rod | 2.29e-20 | 56 |
future spinal cord | 2.29e-20 | 56 |
neural keel | 2.29e-20 | 56 |
cerebral hemisphere | 1.16e-19 | 32 |
regional part of nervous system | 2.63e-19 | 53 |
regional part of brain | 2.63e-19 | 53 |
brain grey matter | 8.61e-19 | 34 |
gray matter | 8.61e-19 | 34 |
regional part of telencephalon | 6.67e-18 | 32 |
telencephalon | 1.09e-17 | 34 |
regional part of cerebral cortex | 2.72e-17 | 22 |
regional part of forebrain | 1.62e-16 | 41 |
forebrain | 1.62e-16 | 41 |
anterior neural tube | 1.62e-16 | 41 |
future forebrain | 1.62e-16 | 41 |
central nervous system | 7.78e-16 | 81 |
neocortex | 9.39e-16 | 20 |
cerebral cortex | 2.76e-15 | 25 |
pallium | 2.76e-15 | 25 |
brain | 3.38e-14 | 68 |
future brain | 3.38e-14 | 68 |
neural plate | 1.38e-13 | 82 |
presumptive neural plate | 1.38e-13 | 82 |
neurectoderm | 5.39e-13 | 86 |
nervous system | 8.48e-13 | 89 |
pre-chordal neural plate | 5.83e-11 | 61 |
adult organism | 7.11e-11 | 114 |
ecto-epithelium | 1.03e-10 | 104 |
structure with developmental contribution from neural crest | 8.61e-10 | 132 |
cell layer | 7.84e-08 | 309 |
epithelium | 1.01e-07 | 306 |
anatomical conduit | 9.60e-07 | 240 |