FFCP PHASE1:Hg19::chr1:156830650..156830666,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4914 | |EntrezGene=4914 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=8031 | |HGNC=8031 | ||
|TSSclassifier=strong | |||
|UniProt=P04629,A8K3Z4 | |UniProt=P04629,A8K3Z4 | ||
|association_with_transcript=-4bp_to_NM_001012331,NM_002529,uc001fqh.1,uc001fqi.1,uc009wsk.1_5end | |association_with_transcript=-4bp_to_NM_001012331,NM_002529,uc001fqh.1,uc001fqi.1,uc009wsk.1_5end | ||
|cluster_id=chr1:156830650..156830666,+ | |||
|description=CAGE_peak_1_at_NTRK1_5end | |description=CAGE_peak_1_at_NTRK1_5end | ||
|id=chr1:156830650..156830666,+ | |id=chr1:156830650..156830666,+ | ||
|ontology_enrichment_celltype=CL:0000080!2.01e-07!6;CL:0002274!3.21e-07!5;CL:0000457!3.21e-07!5;CL:0002191!3.21e-07!5;CL:0000097!3.21e-07!5;CL:0000831!3.21e-07!5;CL:0002028!3.21e-07!5 | |ontology_enrichment_celltype=CL:0000080!2.01e-07!6;CL:0002274!3.21e-07!5;CL:0000457!3.21e-07!5;CL:0002191!3.21e-07!5;CL:0000097!3.21e-07!5;CL:0000831!3.21e-07!5;CL:0002028!3.21e-07!5 | ||
|ontology_enrichment_celltype_v019=CL:0000097;1.07e-10;5!CL:0000333;1.79e-10;5!CL:0000764;1.64e-07;2!CL:0000558;1.64e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000097,1.05e-10,5;CL:0002028,1.05e-10,5;CL:0000763,4.39e-09,108;CL:0000049,4.39e-09,108;CL:0000764,1.46e-07,2;CL:0000765,1.46e-07,2;CL:0000050,1.46e-07,2;CL:0000038,1.46e-07,2;CL:0000558,1.46e-07,2;CL:0000547,1.46e-07,2;CL:0000549,1.46e-07,2;CL:0000550,1.46e-07,2;CL:0000552,1.46e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0010122;7.52e-07;2 | |||
|ontology_enrichment_disease=DOID:1240!4.13e-10!39;DOID:8692!4.93e-10!31;DOID:171!2.88e-09!10;DOID:1036!9.99e-09!8;DOID:2531!7.38e-07!51;DOID:0060083!7.38e-07!51 | |ontology_enrichment_disease=DOID:1240!4.13e-10!39;DOID:8692!4.93e-10!31;DOID:171!2.88e-09!10;DOID:1036!9.99e-09!8;DOID:2531!7.38e-07!51;DOID:0060083!7.38e-07!51 | ||
|ontology_enrichment_disease_v019=DOID:8692;2.16e-20;31!DOID:1036;2.89e-20;8!DOID:1240;7.55e-13;39!DOID:171;4.05e-11;10!DOID:169;9.91e-09;6!DOID:2531;1.20e-07;51!DOID:0060083;1.20e-07;51 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,8.88e-21,31;DOID:1036,2.99e-20,8;DOID:1240,1.01e-15,39;DOID:171,3.68e-11,10;DOID:2531,3.81e-11,51;DOID:0060083,3.81e-11,51;DOID:169,8.70e-09,6 | |||
|ontology_enrichment_uberon=UBERON:0007023!4.38e-08!115;UBERON:0000178!6.81e-08!15;UBERON:0000179!6.81e-08!15;UBERON:0000463!6.81e-08!15;UBERON:0000013!5.02e-07!5;UBERON:0002410!5.02e-07!5 | |ontology_enrichment_uberon=UBERON:0007023!4.38e-08!115;UBERON:0000178!6.81e-08!15;UBERON:0000179!6.81e-08!15;UBERON:0000463!6.81e-08!15;UBERON:0000013!5.02e-07!5;UBERON:0002410!5.02e-07!5 | ||
|ontology_enrichment_uberon_v019=UBERON:0002298;9.38e-13;6!UBERON:0000013;1.79e-10;5!UBERON:0002410;1.79e-10;5!UBERON:0001896;1.01e-09;3!UBERON:0005290;1.01e-09;3!UBERON:0001905;1.44e-07;2!UBERON:0002757;1.44e-07;2!UBERON:0010134;1.44e-07;2!UBERON:0005408;1.44e-07;2!UBERON:0001899;1.44e-07;2!UBERON:0001873;7.52e-07;2!UBERON:0000178;9.54e-07;15!UBERON:0000179;9.54e-07;15!UBERON:0000463;9.54e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002298,7.40e-13,6;UBERON:0000013,1.53e-10,5;UBERON:0002410,1.53e-10,5;UBERON:0001896,8.95e-10,3;UBERON:0005290,8.95e-10,3;UBERON:0010096,8.95e-10,3;UBERON:0001905,1.33e-07,2;UBERON:0002757,1.33e-07,2;UBERON:0010134,1.33e-07,2;UBERON:0005408,1.33e-07,2;UBERON:0001899,1.33e-07,2;UBERON:0001873,3.81e-07,2;UBERON:0010122,3.81e-07,2;UBERON:0000178,7.86e-07,15;UBERON:0000179,7.86e-07,15;UBERON:0000463,7.86e-07,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0,0,0,0,0,0.331397375727916,0,0,0,0,0,0,0.626909442956176,0,0,0,0,0,0,12.9810211360138,0.383829398097213,0.309632246632152,0,0,0,0,0,0,0,0.200544447470142,0,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0.188242339542605,0,0,0.306083892370903,0,0,0,0,0,0.580418477257168,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.96513985737078,0,0.526768169550154,0,0.393010762749165,0,0.167186495390678,0,0,0,0,0,0,0,0.128091319725675,0,1.15106533222573,2.48715016007264,1.15921234294021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0.267440195783507,0,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,0,0,0,0,0.26591592103773,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0,0.286836620748814,0,0,0,0,0,0,0,0.908144565869588,0.576175924479999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0.179389635688862,0,0.211931901159562,0.300091096084402,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0.232387885739037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,142.379675751928,55.5585618623456,1.4512968087854,1.44119953416961,0.88369703398466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257207374262142,0,0,0,0.542621605391443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224170287987055,0.394061520403854,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0,0,0,0.234282829985426,0.601892199455438,6.82222512167955,0,0,0,0,0.195801157462741,0,0.620304078368662,0.862856803274467,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,1.00337954770971,0,0,0,2.63111851975121,3.92153176537351,0,0,0,0.103041011647722,0.0915694648183434,0.165018999841176,0,0,0,0,0.154048617114644,0,0,0,0.145016693914229,0,1.60257664164127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.349934720244983,0,0,0,0,0,0,0,0,1.52234282769651,1.52927441428475,0,0.238231775457789,0.411362273086194,1.29694662238543,0,0,0,0,0,0.185803175125719,0,0.0711418433484141,0.159426272728822,1.59663497146253,0.766021480529467,1.48171507906718,0,0.561594356226918,0,0,0,3.04725200042886,0,0.201799707191048,0,0,0,0,0,0,92.7092559071157,0,15.956885030083,2.33150377598474,25.3776609158129,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0.276283915531148,0,0,0,0,0,0,0,0.295930216910801,0,0,0,0.0927680981618513,1.99613798001194,0,0,0,0,0,0,2.41320361269025,1.74962768029953,0.868124974666461,1.77148277162768,1.92954301800653,0,0,0,0.219385397153973,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,39.8729851243363,45.5420008406429,4.73750887296079,6.27400109816767,9.39800887064719,2.46679852541441,37.8269057973301,0,0,0,0,0,0,0,3.55825354416746,1.85345908419754,2.8193926366473,0.067401132980677,0.802577647298789,0.702793337176017,0,0,0,0,0,0,0.063186579628488,0.150323419414493,0.103688191397247,0,0.330991955875499,0,0,0,0,0,0.0979923974143777,0,0.17472666824203,0,0,0,0,0,0,0.677942222341597,0,0,0,0,0,0,0,0,0.114536596165916,1.02956998717179,0.432164393964449,0,0,0,0,0,0,0.600420288709789,0.136905378891993,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0,0,0.472834243795189,0.104909176269996,0,1.25501137532991,0,0,0,0,0,0,0,1.19730191562487,22.9038132890656,0,0,0,0,1.55139547633861,0,0,0,0.640724475406168,0.157204305099666,0.414239055347196,0,2.17372795087739,0,0,0,0,0,0,0,0,0,0,2.29363678276028,1.33114861844223,1.80079568530012,2.49027542885215,0,0,0,0.470531639396343,0,0,0,0.233713309847224,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.406870733204662,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192914038270915,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0.19998739585493,0.213383459388282,0,0,0,0,0,6.13892982257528,20.3788893539729,1.88719130227076,1.31051565830417,0.33946505990805,3.61377364172861,3.22232987073406,0.558644917973244,0,0.47317047000752,0.80057074828547,0,0,0.449604575675217,0,0,0,0,0,0,0,0,0.11796972334774,0,0,0,0.690359926060101,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,1.09394961803644,0,0,0.175871244359621,0,2.67850917939143,4.03540466662589,0,0.227662191351298,0,0,0,6.79697329768317,0,0,0,0.313972371402056,0.785577949580009,0,0.913158720509496,0,0,0.428859265059938,2.68623139945635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1598144313382,0,0,1.39265542612958,0,0,1.31928620094515,0.301925687133347,0.0771741581079447,0,0,0,0,0.392616934229891,0,0.4226557275834,0,0,0.257831551894309,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0.109265571963696,19.0047751517155,0,0,0.275684698604535,0.250707539292375,0.757786982182394,0.267964130156178,0,0.310298987585686,0,0,0,1.24149428591716,0,0,0.202117188958219,0,0,0.134704106029175,0.143444410785353,0.665320713092027,0,0,0,0,0,0.366724332548599,0,0,0.402547587182052,0 | |phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0,0,0,0,0,0.331397375727916,0,0,0,0,0,0,0.626909442956176,0,0,0,0,0,0,12.9810211360138,0.383829398097213,0.309632246632152,0,0,0,0,0,0,0,0.200544447470142,0,0.223915474239924,0,0,0,0,0,0,0,0,0,0,0,0.344745680736619,0,0,0.188242339542605,0,0,0.306083892370903,0,0,0,0,0,0.580418477257168,0,0,0,0,0,0.605399502633369,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.96513985737078,0,0.526768169550154,0,0.393010762749165,0,0.167186495390678,0,0,0,0,0,0,0,0.128091319725675,0,1.15106533222573,2.48715016007264,1.15921234294021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0.267440195783507,0,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,0,0,0,0,0.26591592103773,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.496971951695318,0,0,0.286836620748814,0,0,0,0,0,0,0,0.908144565869588,0.576175924479999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0.179389635688862,0,0.211931901159562,0.300091096084402,0,0,0,0.168776332241266,0,0,0,0,0,0,0,0.193260853163297,0,0,0,0,0.232387885739037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,142.379675751928,55.5585618623456,1.4512968087854,1.44119953416961,0.88369703398466,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257207374262142,0,0,0,0.542621605391443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.224170287987055,0.394061520403854,0,0.128343036279748,0,0,0,0,0,0,0,0,0,0.500170521059677,0,0,0,0,0.234282829985426,0.601892199455438,6.82222512167955,0,0,0,0,0.195801157462741,0,0.620304078368662,0.862856803274467,0.213455115606889,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,1.00337954770971,0,0,0,2.63111851975121,3.92153176537351,0,0,0,0.103041011647722,0.0915694648183434,0.165018999841176,0,0,0,0,0.154048617114644,0,0,0,0.145016693914229,0,1.60257664164127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.349934720244983,0,0,0,0,0,0,0,0,1.52234282769651,1.52927441428475,0,0.238231775457789,0.411362273086194,1.29694662238543,0,0,0,0,0,0.185803175125719,0,0.0711418433484141,0.159426272728822,1.59663497146253,0.766021480529467,1.48171507906718,0,0.561594356226918,0,0,0,3.04725200042886,0,0.201799707191048,0,0,0,0,0,0,92.7092559071157,0,15.956885030083,2.33150377598474,25.3776609158129,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0.276283915531148,0,0,0,0,0,0,0,0.295930216910801,0,0,0,0.0927680981618513,1.99613798001194,0,0,0,0,0,0,2.41320361269025,1.74962768029953,0.868124974666461,1.77148277162768,1.92954301800653,0,0,0,0.219385397153973,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,39.8729851243363,45.5420008406429,4.73750887296079,6.27400109816767,9.39800887064719,2.46679852541441,37.8269057973301,0,0,0,0,0,0,0,3.55825354416746,1.85345908419754,2.8193926366473,0.067401132980677,0.802577647298789,0.702793337176017,0,0,0,0,0,0,0.063186579628488,0.150323419414493,0.103688191397247,0,0.330991955875499,0,0,0,0,0,0.0979923974143777,0,0.17472666824203,0,0,0,0,0,0,0.677942222341597,0,0,0,0,0,0,0,0,0.114536596165916,1.02956998717179,0.432164393964449,0,0,0,0,0,0,0.600420288709789,0.136905378891993,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0.160753148465019,0,0,0,0,0,0,0.472834243795189,0.104909176269996,0,1.25501137532991,0,0,0,0,0,0,0,1.19730191562487,22.9038132890656,0,0,0,0,1.55139547633861,0,0,0,0.640724475406168,0.157204305099666,0.414239055347196,0,2.17372795087739,0,0,0,0,0,0,0,0,0,0,2.29363678276028,1.33114861844223,1.80079568530012,2.49027542885215,0,0,0,0.470531639396343,0,0,0,0.233713309847224,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.406870733204662,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192914038270915,0,0,0,0,0.138258436151731,0,0,0,0,0,0,0.19998739585493,0.213383459388282,0,0,0,0,0,6.13892982257528,20.3788893539729,1.88719130227076,1.31051565830417,0.33946505990805,3.61377364172861,3.22232987073406,0.558644917973244,0,0.47317047000752,0.80057074828547,0,0,0.449604575675217,0,0,0,0,0,0,0,0,0.11796972334774,0,0,0,0.690359926060101,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,1.09394961803644,0,0,0.175871244359621,0,2.67850917939143,4.03540466662589,0,0.227662191351298,0,0,0,6.79697329768317,0,0,0,0.313972371402056,0.785577949580009,0,0.913158720509496,0,0,0.428859265059938,2.68623139945635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.1598144313382,0,0,1.39265542612958,0,0,1.31928620094515,0.301925687133347,0.0771741581079447,0,0,0,0,0.392616934229891,0,0.4226557275834,0,0,0.257831551894309,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0.109265571963696,19.0047751517155,0,0,0.275684698604535,0.250707539292375,0.757786982182394,0.267964130156178,0,0.310298987585686,0,0,0,1.24149428591716,0,0,0.202117188958219,0,0,0.134704106029175,0.143444410785353,0.665320713092027,0,0,0,0,0,0.366724332548599,0,0,0.402547587182052,0 | ||
|short_description=p1@NTRK1 | |short_description=p1@NTRK1 | ||
}} | }} |
Latest revision as of 18:31, 17 September 2015
Short description: | p1@NTRK1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_NTRK1_5end |
Coexpression cluster: | NA |
Association with transcript: | -4bp_to_NM_001012331, NM_002529, uc001fqh.1, uc001fqi.1, uc009wsk.1_5end |
EntrezGene: | NTRK1 |
HGNC: | 8031 |
UniProt: | P04629A8K3Z4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mast cell | 1.05e-10 | 5 |
basophil mast progenitor cell | 1.05e-10 | 5 |
myeloid cell | 4.39e-09 | 108 |
common myeloid progenitor | 4.39e-09 | 108 |
erythroid lineage cell | 1.46e-07 | 2 |
erythroblast | 1.46e-07 | 2 |
megakaryocyte-erythroid progenitor cell | 1.46e-07 | 2 |
erythroid progenitor cell | 1.46e-07 | 2 |
reticulocyte | 1.46e-07 | 2 |
proerythroblast | 1.46e-07 | 2 |
basophilic erythroblast | 1.46e-07 | 2 |
polychromatophilic erythroblast | 1.46e-07 | 2 |
orthochromatic erythroblast | 1.46e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
brainstem | 7.40e-13 | 6 |
sympathetic nervous system | 1.53e-10 | 5 |
autonomic nervous system | 1.53e-10 | 5 |
medulla oblongata | 8.95e-10 | 3 |
myelencephalon | 8.95e-10 | 3 |
future myelencephalon | 8.95e-10 | 3 |
pineal body | 1.33e-07 | 2 |
regional part of epithalamus | 1.33e-07 | 2 |
secretory circumventricular organ | 1.33e-07 | 2 |
circumventricular organ | 1.33e-07 | 2 |
epithalamus | 1.33e-07 | 2 |
caudate nucleus | 3.81e-07 | 2 |
future caudate nucleus | 3.81e-07 | 2 |
blood | 7.86e-07 | 15 |
haemolymphatic fluid | 7.86e-07 | 15 |
organism substance | 7.86e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 8.88e-21 | 31 |
chronic leukemia | 2.99e-20 | 8 |
leukemia | 1.01e-15 | 39 |
neuroectodermal tumor | 3.68e-11 | 10 |
hematologic cancer | 3.81e-11 | 51 |
immune system cancer | 3.81e-11 | 51 |
neuroendocrine tumor | 8.70e-09 | 6 |