FFCP PHASE1:Hg19::chr5:54274696..54274727,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr5:54274696..54274727,- | |||
|coexpression_cluster_id=C1278 | |||
|description=CAGE_peak_at_chr5:54274696..54274727,- | |description=CAGE_peak_at_chr5:54274696..54274727,- | ||
|id=chr5:54274696..54274727,- | |id=chr5:54274696..54274727,- | ||
|ontology_enrichment_celltype=CL:0002139!5.08e-25!24;CL:0000222!3.21e-24!119;CL:0000115!2.61e-23!35;CL:0002078!1.96e-19!44;CL:0005020!3.36e-16!6;CL:0002138!3.36e-16!6;CL:0005022!3.36e-16!6;CL:0000359!5.89e-16!32;CL:0000213!1.83e-15!57;CL:0000215!1.83e-15!57;CL:1000413!5.23e-14!9;CL:0000071!5.54e-13!18;CL:0002546!5.54e-13!18;CL:0000192!3.13e-11!42;CL:0000514!3.13e-11!42;CL:0000220!4.91e-11!246;CL:0002321!7.40e-11!248;CL:0000680!9.75e-11!57;CL:0000056!9.75e-11!57;CL:0000355!9.75e-11!57;CL:0002595!9.15e-10!5;CL:0002539!1.81e-09!10;CL:0000187!4.93e-09!54;CL:0000393!7.93e-09!60;CL:0000211!7.93e-09!60;CL:0000183!6.07e-08!59;CL:0002544!2.21e-07!6;CL:0000666!4.01e-07!4;CL:0002188!4.01e-07!4 | |ontology_enrichment_celltype=CL:0002139!5.08e-25!24;CL:0000222!3.21e-24!119;CL:0000115!2.61e-23!35;CL:0002078!1.96e-19!44;CL:0005020!3.36e-16!6;CL:0002138!3.36e-16!6;CL:0005022!3.36e-16!6;CL:0000359!5.89e-16!32;CL:0000213!1.83e-15!57;CL:0000215!1.83e-15!57;CL:1000413!5.23e-14!9;CL:0000071!5.54e-13!18;CL:0002546!5.54e-13!18;CL:0000192!3.13e-11!42;CL:0000514!3.13e-11!42;CL:0000220!4.91e-11!246;CL:0002321!7.40e-11!248;CL:0000680!9.75e-11!57;CL:0000056!9.75e-11!57;CL:0000355!9.75e-11!57;CL:0002595!9.15e-10!5;CL:0002539!1.81e-09!10;CL:0000187!4.93e-09!54;CL:0000393!7.93e-09!60;CL:0000211!7.93e-09!60;CL:0000183!6.07e-08!59;CL:0002544!2.21e-07!6;CL:0000666!4.01e-07!4;CL:0002188!4.01e-07!4 | ||
|ontology_enrichment_celltype_v019=CL:0002595;2.02e-18;5!CL:0002188;1.85e-17;5!CL:0002573;5.03e-14;2!CL:1000746;1.21e-12;7!CL:1000612;1.21e-12;7!CL:0000359;1.36e-09;32!CL:0000115;1.48e-08;36!CL:0002681;1.36e-07;12!CL:0002584;1.36e-07;12!CL:0000192;3.50e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0002595,2.08e-18,5;CL:0002188,2.08e-17,5;CL:0002573,5.37e-14,2;CL:1000746,1.31e-12,7;CL:1000612,1.31e-12,7;CL:0000222,3.50e-11,121;CL:0000359,2.33e-10,32;CL:0000115,4.48e-09,36;CL:0000192,1.36e-07,43;CL:0000514,1.36e-07,43;CL:0002681,1.43e-07,12;CL:0002584,1.43e-07,12;CL:0000213,2.75e-07,58;CL:0000215,2.75e-07,58;CL:0002078,3.61e-07,45 | |||
|ontology_enrichment_development_v019=CL:0000514;3.50e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3347;4.35e-11;1!DOID:0060085;9.96e-11;1!DOID:3165;9.96e-11;1!DOID:0060121;9.96e-11;1!DOID:2438;9.96e-11;1!DOID:4418;9.96e-11;1!DOID:0060072;2.48e-10;4!DOID:201;2.73e-07;6!DOID:0060100;2.73e-07;6 | |||
|ontology_enrichment_disease_v019_2=DOID:3347,3.76e-11,1;DOID:0060085,6.14e-11,1;DOID:3165,6.14e-11,1;DOID:0060121,6.14e-11,1;DOID:2438,6.14e-11,1;DOID:4418,6.14e-11,1;DOID:0060072,1.86e-10,4;DOID:201,2.23e-07,6;DOID:0060100,2.23e-07,6 | |||
|ontology_enrichment_uberon=UBERON:0000055!6.18e-32!69;UBERON:0001637!1.59e-28!42;UBERON:0003509!1.59e-28!42;UBERON:0004572!1.59e-28!42;UBERON:0004573!3.52e-28!33;UBERON:0004571!3.52e-28!33;UBERON:0002049!1.00e-26!79;UBERON:0007798!1.00e-26!79;UBERON:0001981!1.03e-23!60;UBERON:0007500!1.03e-23!60;UBERON:0004537!1.03e-23!60;UBERON:0006965!1.03e-23!60;UBERON:0004535!3.56e-19!110;UBERON:0001009!2.03e-18!113;UBERON:0004872!1.55e-17!84;UBERON:0003914!7.41e-16!118;UBERON:0003915!5.23e-14!9;UBERON:0004700!5.23e-14!9;UBERON:0001917!5.23e-14!9;UBERON:0000947!2.73e-13!21;UBERON:0010191!2.73e-13!21;UBERON:0001986!5.54e-13!18;UBERON:0004638!5.54e-13!18;UBERON:0004852!5.54e-13!18;UBERON:0006914!1.43e-12!25;UBERON:0000487!2.38e-12!22;UBERON:0001473!6.00e-12!8;UBERON:0004536!6.00e-12!8;UBERON:0006558!6.00e-12!8;UBERON:0000490!3.66e-11!138;UBERON:0003834!9.15e-10!5;UBERON:0001533!9.15e-10!5;UBERON:0001134!9.72e-10!61;UBERON:0002036!9.72e-10!61;UBERON:0003082!9.72e-10!61;UBERON:0004237!1.81e-09!10;UBERON:0004695!1.81e-09!10;UBERON:0002111!1.81e-09!10;UBERON:0004178!1.81e-09!10;UBERON:0002465!2.14e-09!10;UBERON:0004111!2.46e-09!241;UBERON:0002385!2.74e-09!63;UBERON:0001015!2.74e-09!63;UBERON:0000383!2.74e-09!63;UBERON:0004290!6.13e-09!70;UBERON:0000477!1.44e-08!286;UBERON:0000025!2.25e-08!194;UBERON:0000486!7.38e-08!82;UBERON:0000914!1.01e-07!83;UBERON:0002329!1.01e-07!83;UBERON:0003077!1.01e-07!83;UBERON:0003059!1.01e-07!83;UBERON:0007282!1.01e-07!83;UBERON:0009618!1.01e-07!83;UBERON:0007285!1.01e-07!83 | |||
|ontology_enrichment_uberon_v019=UBERON:0003834;2.02e-18;5!UBERON:0001533;2.02e-18;5!UBERON:0003513;2.52e-13;7!UBERON:0000074;1.21e-12;7!UBERON:0001229;1.21e-12;7!UBERON:0004573;1.86e-12;33!UBERON:0004571;1.86e-12;33!UBERON:0001637;2.45e-12;42!UBERON:0003509;2.45e-12;42!UBERON:0004572;2.45e-12;42!UBERON:0003914;6.17e-08;74!UBERON:0001225;1.36e-07;12!UBERON:0008987;1.36e-07;12!UBERON:0000055;4.98e-07;65 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003834,2.08e-18,5;UBERON:0001533,2.08e-18,5;UBERON:0001637,1.18e-13,42;UBERON:0003509,1.18e-13,42;UBERON:0004572,1.18e-13,42;UBERON:0004573,1.56e-13,33;UBERON:0004571,1.56e-13,33;UBERON:0003513,2.57e-13,7;UBERON:0010532,1.31e-12,7;UBERON:0000074,1.31e-12,7;UBERON:0001229,1.31e-12,7;UBERON:0001230,1.31e-12,7;UBERON:0003220,1.31e-12,7;UBERON:0005749,1.31e-12,7;UBERON:0004199,1.31e-12,7;UBERON:0004209,1.31e-12,7;UBERON:0004198,1.31e-12,7;UBERON:0005103,4.20e-11,8;UBERON:0000083,4.20e-11,8;UBERON:0009201,4.20e-11,8;UBERON:0006553,4.20e-11,8;UBERON:0003074,4.20e-11,8;UBERON:0003060,4.20e-11,8;UBERON:0000055,3.49e-10,68;UBERON:0000080,6.27e-10,9;UBERON:0002120,6.27e-10,9;UBERON:0004875,6.27e-10,9;UBERON:0005721,6.27e-10,9;UBERON:0005754,6.27e-10,9;UBERON:0007297,6.27e-10,9;UBERON:0007500,1.95e-09,59;UBERON:0001981,1.95e-09,59;UBERON:0004537,1.95e-09,59;UBERON:0006965,1.95e-09,59;UBERON:0002049,1.02e-08,78;UBERON:0007798,1.02e-08,78;UBERON:0007503,1.27e-08,78;UBERON:0004876,3.23e-08,11;UBERON:0003914,3.74e-08,117;UBERON:0001225,1.43e-07,12;UBERON:0008987,1.43e-07,12;UBERON:0003887,1.43e-07,12 | |||
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| ||
|short_description=p@chr5:54274696..54274727,- | |short_description=p@chr5:54274696..54274727,- | ||
}} | }} |
Latest revision as of 15:15, 30 July 2015
Short description: | p@chr5:54274696..54274727, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr5:54274696..54274727, - |
Coexpression cluster: | C1278_Smooth_Endothelial_osteosarcoma_schwannoma_large_Renal_Lymphatic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the subclavian artery | 2.08e-18 | 5 |
glomerular endothelial cell | 2.08e-17 | 5 |
Schwann cell | 5.37e-14 | 2 |
glomerular cell | 1.31e-12 | 7 |
kidney corpuscule cell | 1.31e-12 | 7 |
mesodermal cell | 3.50e-11 | 121 |
vascular associated smooth muscle cell | 2.33e-10 | 32 |
endothelial cell | 4.48e-09 | 36 |
smooth muscle cell | 1.36e-07 | 43 |
smooth muscle myoblast | 1.36e-07 | 43 |
kidney cortical cell | 1.43e-07 | 12 |
renal cortical epithelial cell | 1.43e-07 | 12 |
lining cell | 2.75e-07 | 58 |
barrier cell | 2.75e-07 | 58 |
meso-epithelial cell | 3.61e-07 | 45 |
Ontology term | p-value | n |
---|---|---|
osteosarcoma | 3.76e-11 | 1 |
organ system benign neoplasm | 6.14e-11 | 1 |
skin benign neoplasm | 6.14e-11 | 1 |
integumentary system benign neoplasm | 6.14e-11 | 1 |
dermis tumor | 6.14e-11 | 1 |
cutaneous fibrous histiocytoma | 6.14e-11 | 1 |
benign neoplasm | 1.86e-10 | 4 |
connective tissue cancer | 2.23e-07 | 6 |
musculoskeletal system cancer | 2.23e-07 | 6 |