FFCP PHASE1:Hg19::chr6:166401442..166401508,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=90632 | |EntrezGene=90632 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC=21160 | |HGNC=21160 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=18bp_to_ENST00000455853,NR_026860,NR_026861,uc003quq.3,uc003qur.2,uc011egl.1_5end | |association_with_transcript=18bp_to_ENST00000455853,NR_026860,NR_026861,uc003quq.3,uc003qur.2,uc011egl.1_5end | ||
|cluster_id=chr6:166401442..166401508,- | |||
|description=CAGE_peak_2_at_LINC00473_5end | |description=CAGE_peak_2_at_LINC00473_5end | ||
|id=chr6:166401442..166401508,- | |id=chr6:166401442..166401508,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000148;1.80e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000148,1.81e-07,10;CL:0000541,1.81e-07,10 | |||
|ontology_enrichment_development_v019=UBERON:0008947;3.55e-08;29 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!7.48e-24!115;UBERON:0000477!7.77e-15!286;UBERON:0005743!1.28e-14!86;UBERON:0002616!5.03e-14!59;UBERON:0001017!5.59e-14!82;UBERON:0000955!6.77e-14!69;UBERON:0006238!6.77e-14!69;UBERON:0000481!7.55e-14!347;UBERON:0000073!7.27e-13!94;UBERON:0001016!7.27e-13!94;UBERON:0003075!8.60e-13!86;UBERON:0007284!8.60e-13!86;UBERON:0001049!1.05e-12!57;UBERON:0005068!1.05e-12!57;UBERON:0006241!1.05e-12!57;UBERON:0007135!1.05e-12!57;UBERON:0002346!1.37e-12!90;UBERON:0000153!1.42e-10!129;UBERON:0007811!1.42e-10!129;UBERON:0000033!2.41e-10!123;UBERON:0003080!3.01e-09!42;UBERON:0000924!3.08e-09!173;UBERON:0006601!3.08e-09!173;UBERON:0004121!3.20e-09!169;UBERON:0001737!3.75e-09!9;UBERON:0002780!5.88e-09!41;UBERON:0001890!5.88e-09!41;UBERON:0006240!5.88e-09!41;UBERON:0000062!6.62e-09!511;UBERON:0003056!4.11e-08!61;UBERON:0000025!5.43e-08!194;UBERON:0000119!2.16e-07!312;UBERON:0000475!3.07e-07!365;UBERON:0000483!3.40e-07!309;UBERON:0000468!6.11e-07!659;UBERON:0004111!8.99e-07!241 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;1.82e-13;9!UBERON:0001557;1.82e-13;9!UBERON:0001950;1.46e-08;20!UBERON:0002619;1.66e-07;22!UBERON:0000200;4.71e-07;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.14e-15,114;UBERON:0001737,1.83e-13,9;UBERON:0011216,2.73e-11,223;UBERON:0001017,8.26e-11,81;UBERON:0000955,2.20e-10,68;UBERON:0006238,2.20e-10,68;UBERON:0001016,3.85e-10,89;UBERON:0000073,8.90e-10,53;UBERON:0002616,8.90e-10,53;UBERON:0001049,1.24e-09,56;UBERON:0005068,1.24e-09,56;UBERON:0006241,1.24e-09,56;UBERON:0007135,1.24e-09,56;UBERON:0002780,5.87e-09,41;UBERON:0001890,5.87e-09,41;UBERON:0003080,5.87e-09,41;UBERON:0006240,5.87e-09,41;UBERON:0001950,1.39e-08,20;UBERON:0010314,1.57e-08,132;UBERON:0003075,4.18e-08,82;UBERON:0007284,4.18e-08,82;UBERON:0001869,1.30e-07,32;UBERON:0002619,1.58e-07,22;UBERON:0002346,2.42e-07,86;UBERON:0000200,6.18e-07,6;UBERON:0001893,6.40e-07,34;UBERON:0003056,6.81e-07,61;UBERON:0003528,7.65e-07,34;UBERON:0002020,7.65e-07,34;UBERON:0001048,7.73e-07,160 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,6.18831764800233,3.64537113300707,0.672325146451775,0,1.46062018077475,0.487932798790507,0.369363174230364,0,0.313454721478088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0.361439152384566,0.50133791063589,3.47631645505977,0,0.973269740605272,0.283604451492204,0,0.351339142772504,2.48860243445654,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573673241497627,0,0.560677600142307,0,0,0.622422070799533,0,2.12500474047496,4.69208025699287,3.45705554687999,0.937285727335186,0,0,0.149448680551801,0,0,0,0.816616685019573,0.368502951935304,1.65321249881225,5.94001428641027,3.95627086845691,0,0,0,0,0.277064115484183,0.877955241761676,0,6.00952235626387,0.113432183160021,1.07633781413317,0.85422955527427,0.211931901159562,0.300091096084402,0.206105058476878,0,0,0.168776332241266,0.0974370051611986,0,0.276149695926898,0.323292113637624,0,0,1.01736355386293,0,0,0,0,0,0.116193942869518,0.10366105501537,0,0,0,0,2.76269842704961,0,0,27.3288708092039,22.5903484704656,20.485937540096,26.5808474285069,25.7097744029039,25.8624974831095,19.0112144505832,19.2297035822839,22.3153351028906,0,0,0,0,0,0,0,0,0,0.514703430895577,0.109750285408626,0,0,0,0.325808305310325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15295962733569,0,65.0853416494733,56.1522985570668,50.4035023003202,17.1072446022705,60.7710481876642,60.3689546266274,58.308592256638,0.897048674762886,0,0.36669142910475,0.258543431515556,0,0,0,0,0,1.41849132023278,0,17.0143812453196,11.9376753186117,0,0,13.8602860009593,1.58390374586686,0,0,0.599837947092342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0,0,1.27587750330633,0,0,0,2.20844685094452,1.00034104211935,1.35632511849868,0,0.356857977594324,0,0,0,0,0,0,0.368738337083406,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321707842287215,0,0,0,0.0821271560138091,2.07701771673448,0.348631135379878,0,0,0,0.114814448164607,0,0,0,0,0.784349769176855,0,0,0,0,0,0,0,0,0.509752546090077,0,0,0,0,0.256450125116389,0,0.976135183992909,0.103041011647722,0,0.082509499920588,0,0,0,0.48335359146061,0.154048617114644,0,0.137836572484531,0.107420244868274,0,0,0,0,0,0,0,0,1.5740617341532,4.8792608911242,0.308033580176089,0,4.34966496037536,1.66791797193528,0,2.232950216158,0.949138274156178,0.571890581771475,0,0,3.18203247925937,2.35484592059769,0.179872457583315,1.64722217841633,0.471249609382746,0,1.58510321173008,0.421258456238981,0,0.487426979262569,0,0.682499557039929,5.09059555033366,0,13.7841335886531,0,1.31535265576129,0,0.655894752046633,0.202910376962704,0,0.281695602532241,0.143411352204052,0,0,0.709522128141196,0.211107635297664,0,3.03578539012572,5.24902080367474,0,0,0,0.282431402330337,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17206543417515,0,0.66866030566487,0,0,0,0,2.98244294329889,0.844016498463076,0.445234820091624,0,0,0.597743964753209,0,0,1.84083628503879,0,0,0,37.4154255072023,0,1.57829449019094,0,0,3.87733098438087,0.649376687132959,1.99613798001194,0,0.349839999984783,0.724999575434793,0,0,57.6785943513765,0,0,0.347249989866585,0,1.5677537021303,0,3.64911557773041,18.915047613027,5.92340572315726,95.6479709696734,0,0.846452843541768,2.05095700524602,0,0,7.27937391877454,0.638002319463839,0.0915975934018623,1.06606955203727,0,0,0,0,0,0,0,0,0,0,0,0,1.99052386215701,1.59223616106011,0,7.70954934569617,4.57186574102061,3.34150238417457,0.67401132980677,0.802577647298789,0.468528891450678,0,0,0,3.55125962564451,0,0,2.0851571277401,0,0,0,0,0.313932918407225,0,0,0.277349346026277,0,0,0,8.73633341210151,0.51595809741485,42.7662984297756,64.3916883529295,40.4008048701789,0.775912131907355,0,1.58186518546373,0.137041924646751,0,4.24182332904387,11.3419801986186,0,11.7399147106644,0,0,0,0,12.532767424969,0.745515213392595,41.2464560579392,0,0,0,0.577901179803038,0,1.64286454670392,0,0,10.2526068168933,2.51354161145029,0.229160424011684,7.17873024576814,0.399358000997982,0.858452096273142,1.56220020209311,3.15762320687613,4.32359860250884,0,0,0,0,0,0,0,0.272406812223151,0,0,0,0,0,4.4347176360358,0,1.81253126788156,3.19972987623488,0,114.206035155022,0,1.42939065274673,1.98627591109629,0,0,0,0,0,0,1.19271615249795,0,0.146552233678082,0,0.129282956361551,2.24795422962573,43.4560568226197,0,0,0.628817220398664,0.414239055347196,0,0,0,0,0,0,0.306345576763462,0,0,3.54427271986794,2.44052529803926,2.6290095448365,0.573409195690071,2.77322628842131,0.931446044120752,0,0.499921631848426,8.79564881741557,47.3872453684646,0,0,0,0.74627401443437,0.934853239388898,0.554805861502613,2.84104507912634,0,0,0.915360273587694,0.151230923763239,3.26418121223839,1.62640664988597,2.70804504178294,1.34940933649081,3.88157392190648,2.07353103920428,0,0,0.601030435988874,0,0.813741466409323,4.9099137984691,4.51124339578452,0,0,0,0,0.336749488765919,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| ||
|short_description=p2@LINC00473 | |short_description=p2@LINC00473 | ||
}} | }} |
Latest revision as of 19:54, 16 September 2015
Short description: | p2@LINC00473 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LINC00473_5end |
Coexpression cluster: | NA |
Association with transcript: | 18bp_to_ENST00000455853, NR_026860, NR_026861, uc003quq.3, uc003qur.2, uc011egl.1_5end |
EntrezGene: | LINC00473 |
HGNC: | 21160 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
melanocyte | 1.81e-07 | 10 |
melanoblast | 1.81e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.14e-15 | 114 |
larynx | 1.83e-13 | 9 |
organ system subdivision | 2.73e-11 | 223 |
central nervous system | 8.26e-11 | 81 |
brain | 2.20e-10 | 68 |
future brain | 2.20e-10 | 68 |
nervous system | 3.85e-10 | 89 |
regional part of nervous system | 8.90e-10 | 53 |
regional part of brain | 8.90e-10 | 53 |
neural tube | 1.24e-09 | 56 |
neural rod | 1.24e-09 | 56 |
future spinal cord | 1.24e-09 | 56 |
neural keel | 1.24e-09 | 56 |
regional part of forebrain | 5.87e-09 | 41 |
forebrain | 5.87e-09 | 41 |
anterior neural tube | 5.87e-09 | 41 |
future forebrain | 5.87e-09 | 41 |
neocortex | 1.39e-08 | 20 |
structure with developmental contribution from neural crest | 1.57e-08 | 132 |
neural plate | 4.18e-08 | 82 |
presumptive neural plate | 4.18e-08 | 82 |
cerebral hemisphere | 1.30e-07 | 32 |
regional part of cerebral cortex | 1.58e-07 | 22 |
neurectoderm | 2.42e-07 | 86 |
gyrus | 6.18e-07 | 6 |
telencephalon | 6.40e-07 | 34 |
pre-chordal neural plate | 6.81e-07 | 61 |
brain grey matter | 7.65e-07 | 34 |
gray matter | 7.65e-07 | 34 |
primordium | 7.73e-07 | 160 |