FFCP PHASE1:Hg19::chr8:114186065..114186067,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=114788 | |EntrezGene=114788 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19291 | |HGNC=19291 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-16bp_to_ENST00000519485_5end | |association_with_transcript=-16bp_to_ENST00000519485_5end | ||
|cluster_id=chr8:114186065..114186067,- | |||
|coexpression_cluster_id=C16 | |||
|description=CAGE_peak_9_at_CSMD3_5end | |description=CAGE_peak_9_at_CSMD3_5end | ||
|id=chr8:114186065..114186067,- | |id=chr8:114186065..114186067,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:3371!5.78e-07!1;DOID:4549!5.78e-07!1;DOID:5861!5.78e-07!1;DOID:6496!5.78e-07!1 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
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|short_description=p9@CSMD3 | |short_description=p9@CSMD3 | ||
}} | }} |
Latest revision as of 05:30, 25 September 2015
Short description: | p9@CSMD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_CSMD3_5end |
Coexpression cluster: | C16_medial_amygdala_occipital_parietal_olfactory_putamen_brain |
Association with transcript: | -16bp_to_ENST00000519485_5end |
EntrezGene: | CSMD3 |
HGNC: | 19291 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
middle temporal gyrus | 3.61e-34 | 2 |
dorsal plus ventral thalamus | 5.04e-34 | 2 |
thalamic complex | 5.04e-34 | 2 |
regional part of diencephalon | 8.69e-18 | 4 |
regional part of forebrain | 3.52e-15 | 41 |
forebrain | 3.52e-15 | 41 |
anterior neural tube | 3.52e-15 | 41 |
future forebrain | 3.52e-15 | 41 |
occipital lobe | 1.83e-14 | 5 |
neocortex | 1.09e-13 | 20 |
regional part of cerebral cortex | 1.33e-12 | 22 |
gyrus | 2.19e-12 | 6 |
regional part of nervous system | 4.68e-12 | 53 |
regional part of brain | 4.68e-12 | 53 |
neural tube | 1.77e-11 | 56 |
neural rod | 1.77e-11 | 56 |
future spinal cord | 1.77e-11 | 56 |
neural keel | 1.77e-11 | 56 |
cerebral cortex | 2.77e-11 | 25 |
pallium | 2.77e-11 | 25 |
temporal lobe | 8.16e-11 | 6 |
diencephalon | 8.99e-11 | 7 |
future diencephalon | 8.99e-11 | 7 |
pre-chordal neural plate | 1.22e-10 | 61 |
brain | 1.53e-09 | 68 |
future brain | 1.53e-09 | 68 |
regional part of telencephalon | 3.95e-09 | 32 |
cerebral hemisphere | 3.95e-09 | 32 |
brain grey matter | 1.14e-08 | 34 |
gray matter | 1.14e-08 | 34 |
telencephalon | 1.14e-08 | 34 |
central nervous system | 3.31e-08 | 81 |
neural plate | 3.31e-08 | 82 |
presumptive neural plate | 3.31e-08 | 82 |
neurectoderm | 7.10e-08 | 86 |
nervous system | 1.68e-07 | 89 |