FFCP PHASE1:Hg19::chr2:187454515..187454520,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3685 | |EntrezGene=3685 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6150 | |HGNC=6150 | ||
|TSSclassifier=strong | |||
|UniProt=B4DYQ7,B7ZLX0,P06756 | |UniProt=B4DYQ7,B7ZLX0,P06756 | ||
|association_with_transcript=-269bp_to_ENST00000544640,NM_001145000,NM_002210,uc002upq.2,uc010frs.2_5end | |association_with_transcript=-269bp_to_ENST00000544640,NM_001145000,NM_002210,uc002upq.2,uc010frs.2_5end | ||
|cluster_id=chr2:187454515..187454520,+ | |||
|description=CAGE_peak_6_at_ITGAV_5end | |description=CAGE_peak_6_at_ITGAV_5end | ||
|id=chr2:187454515..187454520,+ | |id=chr2:187454515..187454520,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006215;6.31e-08;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.97e-20!115;UBERON:0001017!1.18e-16!82;UBERON:0005743!1.68e-15!86;UBERON:0000073!1.02e-14!94;UBERON:0001016!1.02e-14!94;UBERON:0001049!7.45e-14!57;UBERON:0005068!7.45e-14!57;UBERON:0006241!7.45e-14!57;UBERON:0007135!7.45e-14!57;UBERON:0000955!2.55e-13!69;UBERON:0006238!2.55e-13!69;UBERON:0000475!4.30e-13!365;UBERON:0002346!4.69e-13!90;UBERON:0000924!6.80e-13!173;UBERON:0006601!6.80e-13!173;UBERON:0003075!2.96e-12!86;UBERON:0007284!2.96e-12!86;UBERON:0004121!3.76e-12!169;UBERON:0002616!4.66e-12!59;UBERON:0000468!8.65e-12!659;UBERON:0003080!2.24e-10!42;UBERON:0000062!4.21e-10!511;UBERON:0002780!4.72e-10!41;UBERON:0001890!4.72e-10!41;UBERON:0006240!4.72e-10!41;UBERON:0000922!8.52e-10!612;UBERON:0000467!1.34e-09!625;UBERON:0000480!2.05e-09!626;UBERON:0002050!2.67e-09!605;UBERON:0005423!2.67e-09!605;UBERON:0000923!3.53e-09!604;UBERON:0005291!3.53e-09!604;UBERON:0006598!3.53e-09!604;UBERON:0002532!3.53e-09!604;UBERON:0000033!4.22e-09!123;UBERON:0000481!5.89e-09!347;UBERON:0000153!6.42e-09!129;UBERON:0007811!6.42e-09!129;UBERON:0003056!7.58e-08!61;UBERON:0002020!1.26e-07!34;UBERON:0003528!1.26e-07!34;UBERON:0000483!2.39e-07!309;UBERON:0000477!2.52e-07!286;UBERON:0000025!3.74e-07!194;UBERON:0002791!4.83e-07!33;UBERON:0001893!5.35e-07!34;UBERON:0000119!5.92e-07!312 | |ontology_enrichment_uberon=UBERON:0007023!1.97e-20!115;UBERON:0001017!1.18e-16!82;UBERON:0005743!1.68e-15!86;UBERON:0000073!1.02e-14!94;UBERON:0001016!1.02e-14!94;UBERON:0001049!7.45e-14!57;UBERON:0005068!7.45e-14!57;UBERON:0006241!7.45e-14!57;UBERON:0007135!7.45e-14!57;UBERON:0000955!2.55e-13!69;UBERON:0006238!2.55e-13!69;UBERON:0000475!4.30e-13!365;UBERON:0002346!4.69e-13!90;UBERON:0000924!6.80e-13!173;UBERON:0006601!6.80e-13!173;UBERON:0003075!2.96e-12!86;UBERON:0007284!2.96e-12!86;UBERON:0004121!3.76e-12!169;UBERON:0002616!4.66e-12!59;UBERON:0000468!8.65e-12!659;UBERON:0003080!2.24e-10!42;UBERON:0000062!4.21e-10!511;UBERON:0002780!4.72e-10!41;UBERON:0001890!4.72e-10!41;UBERON:0006240!4.72e-10!41;UBERON:0000922!8.52e-10!612;UBERON:0000467!1.34e-09!625;UBERON:0000480!2.05e-09!626;UBERON:0002050!2.67e-09!605;UBERON:0005423!2.67e-09!605;UBERON:0000923!3.53e-09!604;UBERON:0005291!3.53e-09!604;UBERON:0006598!3.53e-09!604;UBERON:0002532!3.53e-09!604;UBERON:0000033!4.22e-09!123;UBERON:0000481!5.89e-09!347;UBERON:0000153!6.42e-09!129;UBERON:0007811!6.42e-09!129;UBERON:0003056!7.58e-08!61;UBERON:0002020!1.26e-07!34;UBERON:0003528!1.26e-07!34;UBERON:0000483!2.39e-07!309;UBERON:0000477!2.52e-07!286;UBERON:0000025!3.74e-07!194;UBERON:0002791!4.83e-07!33;UBERON:0001893!5.35e-07!34;UBERON:0000119!5.92e-07!312 | ||
|ontology_enrichment_uberon_v019=UBERON:0003296;5.66e-09;4!UBERON:0010133;5.66e-09;4!UBERON:0004732;1.55e-07;13!UBERON:0001894;2.15e-07;7 | |||
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|short_description=p6@ITGAV | |short_description=p6@ITGAV | ||
}} | }} |
Latest revision as of 23:30, 18 September 2015
Short description: | p6@ITGAV |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_ITGAV_5end |
Coexpression cluster: | NA |
Association with transcript: | -269bp_to_ENST00000544640, NM_001145000, NM_002210, uc002upq.2, uc010frs.2_5end |
EntrezGene: | ITGAV |
HGNC: | 6150 |
UniProt: | B4DYQ7B7ZLX0P06756 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 3.43e-19 | 114 |
neurectoderm | 2.95e-14 | 86 |
neural plate | 3.62e-14 | 82 |
presumptive neural plate | 3.62e-14 | 82 |
structure with developmental contribution from neural crest | 6.95e-13 | 132 |
neural tube | 7.84e-12 | 56 |
neural rod | 7.84e-12 | 56 |
future spinal cord | 7.84e-12 | 56 |
neural keel | 7.84e-12 | 56 |
ecto-epithelium | 2.11e-10 | 104 |
regional part of nervous system | 3.35e-10 | 53 |
regional part of brain | 3.35e-10 | 53 |
central nervous system | 9.14e-10 | 81 |
brain | 1.68e-09 | 68 |
future brain | 1.68e-09 | 68 |
ectoderm-derived structure | 2.63e-09 | 171 |
ectoderm | 2.63e-09 | 171 |
presumptive ectoderm | 2.63e-09 | 171 |
gland of diencephalon | 4.27e-09 | 4 |
neuroendocrine gland | 4.27e-09 | 4 |
nervous system | 4.31e-09 | 89 |
posterior neural tube | 4.85e-08 | 15 |
chordal neural plate | 4.85e-08 | 15 |
pre-chordal neural plate | 6.56e-08 | 61 |
diencephalon | 1.14e-07 | 7 |
future diencephalon | 1.14e-07 | 7 |
segmental subdivision of nervous system | 1.78e-07 | 13 |