FFCP PHASE1:Hg19::chr14:55493873..55493887,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr14:55493873..55493887,+
|short_description=p2@SOCS4
|description=CAGE_peak_2_at_SOCS4_5end
|association_with_transcript=29bp_to_NM_080867,NM_199421,uc001xbo....") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=122809 | |EntrezGene=122809 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=19392 | |HGNC=19392 | ||
|TSSclassifier=strong | |||
|UniProt=Q5H9R6,Q8WXH5 | |UniProt=Q5H9R6,Q8WXH5 | ||
|association_with_transcript=29bp_to_NM_080867,NM_199421,uc001xbo.2,uc001xbp.2_5end | |||
|cluster_id=chr14:55493873..55493887,+ | |||
|description=CAGE_peak_2_at_SOCS4_5end | |||
|id=chr14:55493873..55493887,+ | |||
|ontology_enrichment_celltype=CL:0000542!1.53e-15!53;CL:0000051!1.53e-15!53;CL:0000838!4.25e-15!52;CL:0000945!1.19e-08!24;CL:0000826!1.19e-08!24;CL:0000791!1.02e-07!18;CL:0000789!1.02e-07!18;CL:0002420!1.02e-07!18;CL:0002419!1.02e-07!18;CL:0000790!1.02e-07!18;CL:0000236!1.20e-07!14;CL:0000084!4.33e-07!25;CL:0000827!4.33e-07!25 | |||
|ontology_enrichment_celltype_v019=CL:0000542;1.84e-11;53!CL:0000945;6.04e-11;24!CL:0000236;1.78e-10;13!CL:0000791;1.32e-08;18!CL:0000789;1.32e-08;18!CL:0002419;1.32e-08;18!CL:0000084;1.39e-07;25!CL:0000625;3.74e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,3.06e-20,53;CL:0000051,3.06e-20,53;CL:0000838,2.27e-19,52;CL:0000236,2.22e-12,14;CL:0000945,2.39e-11,24;CL:0000826,2.39e-11,24;CL:0000791,1.22e-09,18;CL:0000789,1.22e-09,18;CL:0002420,1.22e-09,18;CL:0002419,1.22e-09,18;CL:0000790,1.22e-09,18;CL:0000084,2.10e-08,25;CL:0000827,2.10e-08,25;CL:0000625,5.84e-08,11 | |||
|ontology_enrichment_development_v019=CL:0000051;1.84e-11;53!CL:0000790;1.32e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.22e-11!94;UBERON:0001016!1.22e-11!94;UBERON:0001017!2.19e-10!82;UBERON:0002020!3.85e-10!34;UBERON:0003528!3.85e-10!34;UBERON:0005743!4.68e-10!86;UBERON:0001893!4.82e-10!34;UBERON:0002791!6.98e-10!33;UBERON:0002780!7.38e-10!41;UBERON:0001890!7.38e-10!41;UBERON:0006240!7.38e-10!41;UBERON:0007023!1.33e-09!115;UBERON:0001869!1.40e-09!32;UBERON:0003080!3.51e-09!42;UBERON:0001049!3.55e-09!57;UBERON:0005068!3.55e-09!57;UBERON:0006241!3.55e-09!57;UBERON:0007135!3.55e-09!57;UBERON:0001950!1.44e-08!20;UBERON:0000956!4.08e-08!25;UBERON:0000203!4.08e-08!25;UBERON:0002619!5.15e-08!22;UBERON:0002616!7.85e-08!59;UBERON:0000955!9.38e-08!69;UBERON:0006238!9.38e-08!69;UBERON:0002346!5.34e-07!90 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;7.94e-11;22!UBERON:0001950;1.29e-10;20!UBERON:0000956;4.24e-09;25!UBERON:0000203;4.24e-09;25!UBERON:0002791;3.83e-08;32!UBERON:0001893;5.89e-08;34!UBERON:0001869;1.16e-07;32!UBERON:0003528;1.96e-07;34!UBERON:0002020;1.96e-07;34!UBERON:0002780;2.24e-07;41!UBERON:0001890;2.24e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002619,1.53e-10,22;UBERON:0001950,1.99e-10,20;UBERON:0001016,2.29e-10,89;UBERON:0002780,5.06e-09,41;UBERON:0001890,5.06e-09,41;UBERON:0003080,5.06e-09,41;UBERON:0006240,5.06e-09,41;UBERON:0000956,7.40e-09,25;UBERON:0000203,7.40e-09,25;UBERON:0003528,1.24e-08,34;UBERON:0002020,1.24e-08,34;UBERON:0001893,2.21e-08,34;UBERON:0002791,3.44e-08,32;UBERON:0001869,3.44e-08,32;UBERON:0001017,3.64e-08,81;UBERON:0001049,1.72e-07,56;UBERON:0005068,1.72e-07,56;UBERON:0006241,1.72e-07,56;UBERON:0007135,1.72e-07,56;UBERON:0000073,1.98e-07,53;UBERON:0002616,1.98e-07,53 | |||
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| ||
|short_description=p2@SOCS4 | |||
}} | }} |
Latest revision as of 15:19, 24 September 2015
Short description: | p2@SOCS4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SOCS4_5end |
Coexpression cluster: | NA |
Association with transcript: | 29bp_to_NM_080867, NM_199421, uc001xbo.2, uc001xbp.2_5end |
EntrezGene: | SOCS4 |
HGNC: | 19392 |
UniProt: | Q5H9R6Q8WXH5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 3.06e-20 | 53 |
common lymphoid progenitor | 3.06e-20 | 53 |
lymphoid lineage restricted progenitor cell | 2.27e-19 | 52 |
B cell | 2.22e-12 | 14 |
lymphocyte of B lineage | 2.39e-11 | 24 |
pro-B cell | 2.39e-11 | 24 |
mature alpha-beta T cell | 1.22e-09 | 18 |
alpha-beta T cell | 1.22e-09 | 18 |
immature T cell | 1.22e-09 | 18 |
mature T cell | 1.22e-09 | 18 |
immature alpha-beta T cell | 1.22e-09 | 18 |
T cell | 2.10e-08 | 25 |
pro-T cell | 2.10e-08 | 25 |
CD8-positive, alpha-beta T cell | 5.84e-08 | 11 |
Ontology term | p-value | n |
---|---|---|
regional part of cerebral cortex | 1.53e-10 | 22 |
neocortex | 1.99e-10 | 20 |
nervous system | 2.29e-10 | 89 |
regional part of forebrain | 5.06e-09 | 41 |
forebrain | 5.06e-09 | 41 |
anterior neural tube | 5.06e-09 | 41 |
future forebrain | 5.06e-09 | 41 |
cerebral cortex | 7.40e-09 | 25 |
pallium | 7.40e-09 | 25 |
brain grey matter | 1.24e-08 | 34 |
gray matter | 1.24e-08 | 34 |
telencephalon | 2.21e-08 | 34 |
regional part of telencephalon | 3.44e-08 | 32 |
cerebral hemisphere | 3.44e-08 | 32 |
central nervous system | 3.64e-08 | 81 |
neural tube | 1.72e-07 | 56 |
neural rod | 1.72e-07 | 56 |
future spinal cord | 1.72e-07 | 56 |
neural keel | 1.72e-07 | 56 |
regional part of nervous system | 1.98e-07 | 53 |
regional part of brain | 1.98e-07 | 53 |