FFCP PHASE1:Hg19::chr3:188671633..188671637,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:188671633..188671637,+ | |||
|coexpression_cluster_id=C0 | |||
|description=CAGE_peak_at_chr3:188671633..188671637,+ | |description=CAGE_peak_at_chr3:188671633..188671637,+ | ||
|id=chr3:188671633..188671637,+ | |id=chr3:188671633..188671637,+ | ||
|ontology_enrichment_celltype=CL:0002057!2.44e-58!42;CL:0000860!1.01e-53!45;CL:0002194!1.33e-52!63;CL:0000576!1.33e-52!63;CL:0000040!1.33e-52!63;CL:0000559!1.33e-52!63;CL:0002009!1.27e-50!65;CL:0000839!3.67e-46!70;CL:0000557!2.41e-45!71;CL:0000766!1.40e-41!76;CL:0002087!2.62e-26!119;CL:0000763!5.56e-26!112;CL:0000049!5.56e-26!112;CL:0002031!2.43e-23!124;CL:0000738!1.66e-20!140;CL:0000988!8.85e-16!182;CL:0002032!1.26e-15!165;CL:0000837!1.26e-15!165;CL:0000037!1.83e-15!172;CL:0000566!1.83e-15!172;CL:0000048!7.55e-07!430;CL:0000134!8.03e-07!358 | |ontology_enrichment_celltype=CL:0002057!2.44e-58!42;CL:0000860!1.01e-53!45;CL:0002194!1.33e-52!63;CL:0000576!1.33e-52!63;CL:0000040!1.33e-52!63;CL:0000559!1.33e-52!63;CL:0002009!1.27e-50!65;CL:0000839!3.67e-46!70;CL:0000557!2.41e-45!71;CL:0000766!1.40e-41!76;CL:0002087!2.62e-26!119;CL:0000763!5.56e-26!112;CL:0000049!5.56e-26!112;CL:0002031!2.43e-23!124;CL:0000738!1.66e-20!140;CL:0000988!8.85e-16!182;CL:0002032!1.26e-15!165;CL:0000837!1.26e-15!165;CL:0000037!1.83e-15!172;CL:0000566!1.83e-15!172;CL:0000048!7.55e-07!430;CL:0000134!8.03e-07!358 | ||
|ontology_enrichment_celltype_v019=CL:0000860;9.58e-70;33!CL:0002057;9.58e-70;33!CL:0000473;3.12e-56;39!CL:0000234;3.12e-56;39!CL:0000576;2.57e-32;48!CL:0000766;2.50e-23;69!CL:0000763;1.53e-12;100!CL:0002087;1.32e-11;104!CL:0000511;3.96e-10;1!CL:0002625;3.96e-10;1!CL:0000216;3.96e-10;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.06e-67,42;CL:0002057,3.06e-67,42;CL:0000473,2.88e-65,48;CL:0000234,2.88e-65,48;CL:0002194,1.13e-51,59;CL:0000576,1.13e-51,59;CL:0000040,1.13e-51,59;CL:0000559,1.13e-51,59;CL:0002009,6.40e-50,61;CL:0000839,5.45e-46,66;CL:0000557,2.84e-45,67;CL:0000766,5.53e-42,72;CL:0000763,2.57e-30,108;CL:0000049,2.57e-30,108;CL:0002087,2.26e-25,115;CL:0002031,3.33e-24,120;CL:0000738,4.90e-21,136;CL:0002032,1.99e-19,161;CL:0000837,1.99e-19,161;CL:0000037,1.69e-18,168;CL:0000988,2.08e-17,177;CL:0000511,3.29e-10,1;CL:0002625,3.29e-10,1;CL:0000216,3.29e-10,1;CL:0000134,3.89e-07,354;CL:0002320,6.20e-07,361 | |||
|ontology_enrichment_development_v019=CL:0002057;3.29e-44;42!UBERON:0005425;1.13e-10;1!CL:0000049;3.61e-08;108 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!6.63e-39!80;UBERON:0001474!2.33e-35!86;UBERON:0002390!4.57e-33!102;UBERON:0003061!4.57e-33!102;UBERON:0002193!1.20e-30!112;UBERON:0004765!5.86e-30!101;UBERON:0001434!5.86e-30!101;UBERON:0002405!2.05e-26!115;UBERON:0002204!2.76e-19!167;UBERON:0003081!4.65e-13!216 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;1.13e-10;1!UBERON:0001785;1.13e-10;1!UBERON:0002464;1.13e-10;1!UBERON:0004904;1.13e-10;1!UBERON:0001021;1.13e-10;1!UBERON:0001136;3.96e-10;1!UBERON:0001343;3.96e-10;1!UBERON:0004910;3.96e-10;1!UBERON:0004813;3.96e-10;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.17e-39,76;UBERON:0001474,1.37e-36,82;UBERON:0004765,3.98e-33,90;UBERON:0002405,5.59e-32,93;UBERON:0002390,3.21e-30,98;UBERON:0003061,3.21e-30,98;UBERON:0001434,1.45e-29,100;UBERON:0002193,3.47e-27,108;UBERON:0002204,1.31e-16,167;UBERON:0003081,8.40e-15,203;UBERON:0000941,1.08e-10,1;UBERON:0001785,1.08e-10,1;UBERON:0002464,1.08e-10,1;UBERON:0004904,1.08e-10,1;UBERON:0001021,1.08e-10,1;UBERON:0003902,1.08e-10,1;UBERON:0005425,1.08e-10,1;UBERON:0001136,3.29e-10,1;UBERON:0001343,3.29e-10,1;UBERON:0004910,3.29e-10,1;UBERON:0005154,3.29e-10,1;UBERON:0005295,3.29e-10,1;UBERON:0004813,3.29e-10,1;UBERON:0005297,3.29e-10,1;UBERON:0005294,3.29e-10,1;UBERON:0010141,3.29e-10,1;UBERON:0005891,3.29e-10,1;UBERON:0000926,1.99e-08,315;UBERON:0004120,1.99e-08,315;UBERON:0006603,1.99e-08,315 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0774672005803016,0,0,0.553995408531877,1.20326668482085,0.217010870715852,0.223915474239924,0,0,0.145398238779565,0.377875943688809,0.242584061187816,0.464858073811369,0.822335776043652,2.16794459626573,0.863077176966451,3.07392847834921,2.60130452877444,8.27389633767885,10.973239620925,4.06279459783025,0.941211697713023,0.818718450173537,0.449446968890169,15.3041946185451,7.06043859567406,11.5080682643827,0,0.797854630486527,0,2.03146467040009,1.13477044938228,2.4912889959823,3.76872997885115,5.21482918420201,2.17188844705117,0.605399502633369,2.57794345191295,2.53169909952708,0,0,0.209658645508376,0,0,0.16072558669708,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0.144846518960824,0,0,0,0,0,0,0,0,0,0,0.26591592103773,0,0,0,0,0,0,0,0,0,0,0.516833518338658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.984868024349589,0.234004265139238,0.743155811443641,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285955987316295,0,0,0,0,0,0,0,0,1.2162378064119,0.502257091432126,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773288812777695,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0.426910231213777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182091168006717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6068392984416,0,0,0,0,0,0,0,0.0890320356467374,0,0,0.127612712494584,0,0,0,0,0.616067160352178,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0,0.274537029736055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281695602532241,0,0,0,0,0.211107635297664,0,0,0,0.0962221127255121,0,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4098700508785,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296521128680622,0.247127877893006,0,0.067401132980677,0,0,0,0,0.242780379534093,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0.138674673013139,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0.195551382734803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.717873024576814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327872630709804,0,0,0,0,0,0,0,0.138348634936231,0,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0,0,0,0,0,0.449803112163605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0.260994291965212,0,0,0,0,0,0,0,0,0.168942440653073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247871528518004,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,5.71077681036618,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 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|phase1_expression=0,0.214100523890983,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0774672005803016,0,0,0.553995408531877,1.20326668482085,0.217010870715852,0.223915474239924,0,0,0.145398238779565,0.377875943688809,0.242584061187816,0.464858073811369,0.822335776043652,2.16794459626573,0.863077176966451,3.07392847834921,2.60130452877444,8.27389633767885,10.973239620925,4.06279459783025,0.941211697713023,0.818718450173537,0.449446968890169,15.3041946185451,7.06043859567406,11.5080682643827,0,0.797854630486527,0,2.03146467040009,1.13477044938228,2.4912889959823,3.76872997885115,5.21482918420201,2.17188844705117,0.605399502633369,2.57794345191295,2.53169909952708,0,0,0.209658645508376,0,0,0.16072558669708,0,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.14828656316206,0,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,0,0.144846518960824,0,0,0,0,0,0,0,0,0,0,0.26591592103773,0,0,0,0,0,0,0,0,0,0,0.516833518338658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.984868024349589,0.234004265139238,0.743155811443641,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.285955987316295,0,0,0,0,0,0,0,0,1.2162378064119,0.502257091432126,0,0,0,0,0,0,0,0,0,0,0,0,0,0.773288812777695,0,0.637938751653163,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0868836144680828,0,0,0,0,0.426910231213777,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182091168006717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.6068392984416,0,0,0,0,0,0,0,0.0890320356467374,0,0,0.127612712494584,0,0,0,0,0.616067160352178,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0,0.274537029736055,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.281695602532241,0,0,0,0,0.211107635297664,0,0,0,0.0962221127255121,0,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.4098700508785,0,0.146508179271894,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102268682502155,0,0,0,0,0,0,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139423744278603,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296521128680622,0.247127877893006,0,0.067401132980677,0,0,0,0,0.242780379534093,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0.138674673013139,0,0,0,0.17472666824203,0,0,0,0,0,0,0,0,0,0,0.195551382734803,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.717873024576814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.327872630709804,0,0,0,0,0,0,0,0.138348634936231,0,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0,0,0,0,0,0.449803112163605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0.260994291965212,0,0,0,0,0,0,0,0,0.168942440653073,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247871528518004,0,0,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,5.71077681036618,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.102662806856247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr3:188671633..188671637,+ | |short_description=p@chr3:188671633..188671637,+ | ||
}} | }} |
Latest revision as of 19:21, 29 July 2015
Short description: | p@chr3:188671633..188671637, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:188671633..188671637, + |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 3.06e-67 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.06e-67 | 42 |
defensive cell | 2.88e-65 | 48 |
phagocyte | 2.88e-65 | 48 |
monopoietic cell | 1.13e-51 | 59 |
monocyte | 1.13e-51 | 59 |
monoblast | 1.13e-51 | 59 |
promonocyte | 1.13e-51 | 59 |
macrophage dendritic cell progenitor | 6.40e-50 | 61 |
myeloid lineage restricted progenitor cell | 5.45e-46 | 66 |
granulocyte monocyte progenitor cell | 2.84e-45 | 67 |
myeloid leukocyte | 5.53e-42 | 72 |
myeloid cell | 2.57e-30 | 108 |
common myeloid progenitor | 2.57e-30 | 108 |
nongranular leukocyte | 2.26e-25 | 115 |
hematopoietic lineage restricted progenitor cell | 3.33e-24 | 120 |
leukocyte | 4.90e-21 | 136 |
hematopoietic oligopotent progenitor cell | 1.99e-19 | 161 |
hematopoietic multipotent progenitor cell | 1.99e-19 | 161 |
hematopoietic stem cell | 1.69e-18 | 168 |
hematopoietic cell | 2.08e-17 | 177 |
androgen binding protein secreting cell | 3.29e-10 | 1 |
seminiferous tubule epithelial cell | 3.29e-10 | 1 |
Sertoli cell | 3.29e-10 | 1 |
mesenchymal cell | 3.89e-07 | 354 |
connective tissue cell | 6.20e-07 | 361 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.17e-39 | 76 |
bone element | 1.37e-36 | 82 |
skeletal element | 3.98e-33 | 90 |
immune system | 5.59e-32 | 93 |
hematopoietic system | 3.21e-30 | 98 |
blood island | 3.21e-30 | 98 |
skeletal system | 1.45e-29 | 100 |
hemolymphoid system | 3.47e-27 | 108 |
musculoskeletal system | 1.31e-16 | 167 |
lateral plate mesoderm | 8.40e-15 | 203 |
cranial nerve II | 1.08e-10 | 1 |
cranial nerve | 1.08e-10 | 1 |
nerve trunk | 1.08e-10 | 1 |
nerve connecting eye with brain | 1.08e-10 | 1 |
nerve | 1.08e-10 | 1 |
retinal neural layer | 1.08e-10 | 1 |
presumptive neural retina | 1.08e-10 | 1 |
mesothelium | 3.29e-10 | 1 |
seminiferous tubule of testis | 3.29e-10 | 1 |
epithelium of male gonad | 3.29e-10 | 1 |
epithelial cord | 3.29e-10 | 1 |
sex cord | 3.29e-10 | 1 |
seminiferous tubule epithelium | 3.29e-10 | 1 |
testis sex cord | 3.29e-10 | 1 |
genital ridge | 3.29e-10 | 1 |
primitive sex cord of indifferent gonad | 3.29e-10 | 1 |
coelomic epithelium | 3.29e-10 | 1 |
mesoderm | 1.99e-08 | 315 |
mesoderm-derived structure | 1.99e-08 | 315 |
presumptive mesoderm | 1.99e-08 | 315 |