FFCP PHASE1:Hg19::chrM:10741..10754,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=162bp_to_uc004cov.3_5end | |association_with_transcript=162bp_to_uc004cov.3_5end | ||
|cluster_id=chrM:10741..10754,+ | |||
|coexpression_cluster_id=C180 | |||
|description=CAGE_peak_4_at_uc004cov.3_5end | |description=CAGE_peak_4_at_uc004cov.3_5end | ||
|id=chrM:10741..10754,+ | |id=chrM:10741..10754,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;2.28e-08;82 | |||
|ontology_enrichment_disease=DOID:14566!2.32e-21!239;DOID:162!2.45e-21!235;DOID:0050687!4.72e-12!143;DOID:0050686!1.56e-08!137;DOID:305!3.70e-08!106 | |ontology_enrichment_disease=DOID:14566!2.32e-21!239;DOID:162!2.45e-21!235;DOID:0050687!4.72e-12!143;DOID:0050686!1.56e-08!137;DOID:305!3.70e-08!106 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:14566,2.32e-21,239;DOID:162,2.45e-21,235;DOID:0050687,4.72e-12,143;DOID:0050686,1.56e-08,137;DOID:305,3.70e-08,106 | |||
|ontology_enrichment_uberon=UBERON:0001049!1.78e-19!57;UBERON:0005068!1.78e-19!57;UBERON:0006241!1.78e-19!57;UBERON:0007135!1.78e-19!57;UBERON:0007023!5.09e-19!115;UBERON:0001017!1.72e-17!82;UBERON:0003080!4.79e-17!42;UBERON:0002780!5.43e-17!41;UBERON:0001890!5.43e-17!41;UBERON:0006240!5.43e-17!41;UBERON:0000073!1.25e-16!94;UBERON:0001016!1.25e-16!94;UBERON:0005743!3.80e-16!86;UBERON:0000955!1.61e-15!69;UBERON:0006238!1.61e-15!69;UBERON:0002020!6.53e-15!34;UBERON:0003528!6.53e-15!34;UBERON:0002616!1.92e-14!59;UBERON:0002791!9.27e-14!33;UBERON:0001893!1.61e-13!34;UBERON:0001869!6.83e-13!32;UBERON:0002346!8.97e-13!90;UBERON:0003075!5.48e-12!86;UBERON:0007284!5.48e-12!86;UBERON:0002619!2.07e-11!22;UBERON:0001950!3.54e-10!20;UBERON:0000956!3.58e-10!25;UBERON:0000203!3.58e-10!25;UBERON:0003056!2.48e-09!61;UBERON:0000924!4.24e-09!173;UBERON:0006601!4.24e-09!173;UBERON:0004121!1.80e-08!169;UBERON:0000033!4.99e-07!123;UBERON:0000153!5.70e-07!129;UBERON:0007811!5.70e-07!129 | |ontology_enrichment_uberon=UBERON:0001049!1.78e-19!57;UBERON:0005068!1.78e-19!57;UBERON:0006241!1.78e-19!57;UBERON:0007135!1.78e-19!57;UBERON:0007023!5.09e-19!115;UBERON:0001017!1.72e-17!82;UBERON:0003080!4.79e-17!42;UBERON:0002780!5.43e-17!41;UBERON:0001890!5.43e-17!41;UBERON:0006240!5.43e-17!41;UBERON:0000073!1.25e-16!94;UBERON:0001016!1.25e-16!94;UBERON:0005743!3.80e-16!86;UBERON:0000955!1.61e-15!69;UBERON:0006238!1.61e-15!69;UBERON:0002020!6.53e-15!34;UBERON:0003528!6.53e-15!34;UBERON:0002616!1.92e-14!59;UBERON:0002791!9.27e-14!33;UBERON:0001893!1.61e-13!34;UBERON:0001869!6.83e-13!32;UBERON:0002346!8.97e-13!90;UBERON:0003075!5.48e-12!86;UBERON:0007284!5.48e-12!86;UBERON:0002619!2.07e-11!22;UBERON:0001950!3.54e-10!20;UBERON:0000956!3.58e-10!25;UBERON:0000203!3.58e-10!25;UBERON:0003056!2.48e-09!61;UBERON:0000924!4.24e-09!173;UBERON:0006601!4.24e-09!173;UBERON:0004121!1.80e-08!169;UBERON:0000033!4.99e-07!123;UBERON:0000153!5.70e-07!129;UBERON:0007811!5.70e-07!129 | ||
|ontology_enrichment_uberon_v019=UBERON:0003528;1.24e-12;34!UBERON:0002020;1.24e-12;34!UBERON:0002780;1.46e-12;41!UBERON:0001890;1.46e-12;41!UBERON:0002791;2.06e-12;32!UBERON:0001869;9.11e-12;32!UBERON:0001893;2.09e-11;34!UBERON:0002619;2.12e-11;22!UBERON:0000073;1.27e-10;53!UBERON:0002616;1.27e-10;53!UBERON:0001950;3.61e-10;20!UBERON:0000956;3.80e-10;25!UBERON:0000203;3.80e-10;25!UBERON:0000955;6.21e-08;68!UBERON:0001016;1.49e-07;83!UBERON:0001017;1.95e-07;75 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,2.15e-19,56;UBERON:0005068,2.15e-19,56;UBERON:0006241,2.15e-19,56;UBERON:0007135,2.15e-19,56;UBERON:0007023,1.68e-18,114;UBERON:0000073,7.76e-18,53;UBERON:0002616,7.76e-18,53;UBERON:0001016,8.98e-18,89;UBERON:0001017,2.29e-17,81;UBERON:0002780,5.43e-17,41;UBERON:0001890,5.43e-17,41;UBERON:0003080,5.43e-17,41;UBERON:0006240,5.43e-17,41;UBERON:0000955,2.12e-15,68;UBERON:0006238,2.12e-15,68;UBERON:0003528,6.52e-15,34;UBERON:0002020,6.52e-15,34;UBERON:0002791,1.11e-13,32;UBERON:0002346,1.45e-13,86;UBERON:0001893,1.61e-13,34;UBERON:0001869,6.83e-13,32;UBERON:0003075,9.12e-13,82;UBERON:0007284,9.12e-13,82;UBERON:0002619,2.07e-11,22;UBERON:0011216,5.65e-11,223;UBERON:0001950,3.54e-10,20;UBERON:0000956,3.58e-10,25;UBERON:0000203,3.58e-10,25;UBERON:0010371,8.28e-10,104;UBERON:0003056,1.25e-09,61;UBERON:0004121,4.75e-09,171;UBERON:0000924,4.75e-09,171;UBERON:0006601,4.75e-09,171 | |||
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| ||
|short_description=p4@uc004cov.3 | |short_description=p4@uc004cov.3 | ||
}} | }} |
Latest revision as of 03:52, 1 August 2015
Short description: | p4@uc004cov.3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_uc004cov.3_5end |
Coexpression cluster: | C180_skeletal_heart_Hepatocyte_acute_occipital_hippocampus_middle |
Association with transcript: | 162bp_to_uc004cov.3_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural tube | 2.15e-19 | 56 |
neural rod | 2.15e-19 | 56 |
future spinal cord | 2.15e-19 | 56 |
neural keel | 2.15e-19 | 56 |
adult organism | 1.68e-18 | 114 |
regional part of nervous system | 7.76e-18 | 53 |
regional part of brain | 7.76e-18 | 53 |
nervous system | 8.98e-18 | 89 |
central nervous system | 2.29e-17 | 81 |
regional part of forebrain | 5.43e-17 | 41 |
forebrain | 5.43e-17 | 41 |
anterior neural tube | 5.43e-17 | 41 |
future forebrain | 5.43e-17 | 41 |
brain | 2.12e-15 | 68 |
future brain | 2.12e-15 | 68 |
brain grey matter | 6.52e-15 | 34 |
gray matter | 6.52e-15 | 34 |
regional part of telencephalon | 1.11e-13 | 32 |
neurectoderm | 1.45e-13 | 86 |
telencephalon | 1.61e-13 | 34 |
cerebral hemisphere | 6.83e-13 | 32 |
neural plate | 9.12e-13 | 82 |
presumptive neural plate | 9.12e-13 | 82 |
regional part of cerebral cortex | 2.07e-11 | 22 |
organ system subdivision | 5.65e-11 | 223 |
neocortex | 3.54e-10 | 20 |
cerebral cortex | 3.58e-10 | 25 |
pallium | 3.58e-10 | 25 |
ecto-epithelium | 8.28e-10 | 104 |
pre-chordal neural plate | 1.25e-09 | 61 |
ectoderm-derived structure | 4.75e-09 | 171 |
ectoderm | 4.75e-09 | 171 |
presumptive ectoderm | 4.75e-09 | 171 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 2.32e-21 | 239 |
cancer | 2.45e-21 | 235 |
cell type cancer | 4.72e-12 | 143 |
organ system cancer | 1.56e-08 | 137 |
carcinoma | 3.70e-08 | 106 |