FFCP PHASE1:Hg19::chr17:26699073..26699105,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:26699073..26699105,+
|short_description=p4@SARM1
|description=CAGE_peak_4_at_SARM1_5end
|association_with_transcript=19bp_to_ENST00000003834_5end
|Entrez...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=23098 | |EntrezGene=23098 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17074 | |HGNC=17074 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=19bp_to_ENST00000003834_5end | |||
|cluster_id=chr17:26699073..26699105,+ | |||
|description=CAGE_peak_4_at_SARM1_5end | |||
|id=chr17:26699073..26699105,+ | |||
|ontology_enrichment_celltype=CL:0000791!2.07e-07!18;CL:0000789!2.07e-07!18;CL:0002420!2.07e-07!18;CL:0002419!2.07e-07!18;CL:0000790!2.07e-07!18;CL:0000542!2.41e-07!53;CL:0000051!2.41e-07!53;CL:0000838!4.38e-07!52 | |||
|ontology_enrichment_celltype_v019=CL:0000791;4.62e-08;18!CL:0000789;4.62e-08;18!CL:0002419;4.62e-08;18!CL:0000084;7.90e-07;25 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,4.76e-08,53;CL:0000051,4.76e-08,53;CL:0000791,8.42e-08,18;CL:0000789,8.42e-08,18;CL:0002420,8.42e-08,18;CL:0002419,8.42e-08,18;CL:0000790,8.42e-08,18;CL:0000838,9.26e-08,52 | |||
|ontology_enrichment_development_v019=CL:0000790;4.62e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!8.80e-20!94;UBERON:0001016!8.80e-20!94;UBERON:0001017!3.70e-19!82;UBERON:0005743!4.78e-19!86;UBERON:0001049!1.48e-18!57;UBERON:0005068!1.48e-18!57;UBERON:0006241!1.48e-18!57;UBERON:0007135!1.48e-18!57;UBERON:0000955!5.46e-18!69;UBERON:0006238!5.46e-18!69;UBERON:0007023!2.95e-17!115;UBERON:0002346!1.91e-16!90;UBERON:0002616!3.90e-16!59;UBERON:0002780!5.67e-16!41;UBERON:0001890!5.67e-16!41;UBERON:0006240!5.67e-16!41;UBERON:0003075!1.14e-15!86;UBERON:0007284!1.14e-15!86;UBERON:0003080!1.65e-15!42;UBERON:0001893!5.46e-13!34;UBERON:0002791!1.77e-12!33;UBERON:0002020!2.57e-12!34;UBERON:0003528!2.57e-12!34;UBERON:0001869!3.17e-12!32;UBERON:0003056!5.43e-12!61;UBERON:0000924!1.18e-10!173;UBERON:0006601!1.18e-10!173;UBERON:0004121!5.22e-10!169;UBERON:0000956!3.06e-09!25;UBERON:0000203!3.06e-09!25;UBERON:0000153!6.22e-09!129;UBERON:0007811!6.22e-09!129;UBERON:0002619!7.09e-09!22;UBERON:0001950!9.12e-09!20;UBERON:0000033!9.15e-09!123 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;9.19e-13;41!UBERON:0001890;9.19e-13;41!UBERON:0001893;2.26e-11;34!UBERON:0001869;2.54e-11;32!UBERON:0000073;3.25e-11;53!UBERON:0002616;3.25e-11;53!UBERON:0002791;4.69e-11;32!UBERON:0003528;2.18e-10;34!UBERON:0002020;2.18e-10;34!UBERON:0000955;1.39e-09;68!UBERON:0000956;7.81e-09;25!UBERON:0000203;7.81e-09;25!UBERON:0001950;1.16e-08;20!UBERON:0002619;1.88e-08;22!UBERON:0001017;3.20e-08;75!UBERON:0001016;1.39e-07;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,7.15e-20,56;UBERON:0005068,7.15e-20,56;UBERON:0006241,7.15e-20,56;UBERON:0007135,7.15e-20,56;UBERON:0001016,1.75e-19,89;UBERON:0000073,3.51e-19,53;UBERON:0002616,3.51e-19,53;UBERON:0001017,3.72e-19,81;UBERON:0000955,2.28e-18,68;UBERON:0006238,2.28e-18,68;UBERON:0002346,2.20e-17,86;UBERON:0003075,1.22e-16,82;UBERON:0007284,1.22e-16,82;UBERON:0002780,3.09e-16,41;UBERON:0001890,3.09e-16,41;UBERON:0003080,3.09e-16,41;UBERON:0006240,3.09e-16,41;UBERON:0007023,2.14e-15,114;UBERON:0001893,5.88e-13,34;UBERON:0010371,1.76e-12,104;UBERON:0003056,2.70e-12,61;UBERON:0003528,3.02e-12,34;UBERON:0002020,3.02e-12,34;UBERON:0001869,4.08e-12,32;UBERON:0002791,8.01e-12,32;UBERON:0004121,6.46e-10,171;UBERON:0000924,6.46e-10,171;UBERON:0006601,6.46e-10,171;UBERON:0000956,7.30e-09,25;UBERON:0000203,7.30e-09,25;UBERON:0001950,1.20e-08,20;UBERON:0002619,2.05e-08,22;UBERON:0010314,7.10e-08,132 | |||
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| ||
|short_description=p4@SARM1 | |||
}} | }} |
Latest revision as of 05:46, 19 September 2015
Short description: | p4@SARM1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SARM1_5end |
Coexpression cluster: | NA |
Association with transcript: | 19bp_to_ENST00000003834_5end |
EntrezGene: | SARM1 |
HGNC: | 17074 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 4.76e-08 | 53 |
common lymphoid progenitor | 4.76e-08 | 53 |
mature alpha-beta T cell | 8.42e-08 | 18 |
alpha-beta T cell | 8.42e-08 | 18 |
immature T cell | 8.42e-08 | 18 |
mature T cell | 8.42e-08 | 18 |
immature alpha-beta T cell | 8.42e-08 | 18 |
lymphoid lineage restricted progenitor cell | 9.26e-08 | 52 |
Ontology term | p-value | n |
---|---|---|
neural tube | 7.15e-20 | 56 |
neural rod | 7.15e-20 | 56 |
future spinal cord | 7.15e-20 | 56 |
neural keel | 7.15e-20 | 56 |
nervous system | 1.75e-19 | 89 |
regional part of nervous system | 3.51e-19 | 53 |
regional part of brain | 3.51e-19 | 53 |
central nervous system | 3.72e-19 | 81 |
brain | 2.28e-18 | 68 |
future brain | 2.28e-18 | 68 |
neurectoderm | 2.20e-17 | 86 |
neural plate | 1.22e-16 | 82 |
presumptive neural plate | 1.22e-16 | 82 |
regional part of forebrain | 3.09e-16 | 41 |
forebrain | 3.09e-16 | 41 |
anterior neural tube | 3.09e-16 | 41 |
future forebrain | 3.09e-16 | 41 |
adult organism | 2.14e-15 | 114 |
telencephalon | 5.88e-13 | 34 |
ecto-epithelium | 1.76e-12 | 104 |
pre-chordal neural plate | 2.70e-12 | 61 |
brain grey matter | 3.02e-12 | 34 |
gray matter | 3.02e-12 | 34 |
cerebral hemisphere | 4.08e-12 | 32 |
regional part of telencephalon | 8.01e-12 | 32 |
ectoderm-derived structure | 6.46e-10 | 171 |
ectoderm | 6.46e-10 | 171 |
presumptive ectoderm | 6.46e-10 | 171 |
cerebral cortex | 7.30e-09 | 25 |
pallium | 7.30e-09 | 25 |
neocortex | 1.20e-08 | 20 |
regional part of cerebral cortex | 2.05e-08 | 22 |
structure with developmental contribution from neural crest | 7.10e-08 | 132 |