FFCP PHASE1:Hg19::chr17:28088491..28088502,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:28088491..28088502,-
|short_description=p6@SSH2
|description=CAGE_peak_6_at_SSH2_5end
|association_with_transcript=-83bp_to_uc002heq.2_5end
|EntrezGene=8...") |
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(13 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=85464 | |EntrezGene=85464 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30580 | |HGNC=30580 | ||
|TSSclassifier=strong | |||
|UniProt=Q76I76 | |UniProt=Q76I76 | ||
|association_with_transcript=-83bp_to_uc002heq.2_5end | |||
|cluster_id=chr17:28088491..28088502,- | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_6_at_SSH2_5end | |||
|id=chr17:28088491..28088502,- | |||
|ontology_enrichment_celltype=CL:0002087!4.92e-30!119;CL:0000738!4.94e-30!140;CL:0002031!2.27e-23!124;CL:0000037!9.54e-23!172;CL:0000566!9.54e-23!172;CL:0002032!3.37e-20!165;CL:0000837!3.37e-20!165;CL:0000988!4.68e-20!182;CL:0002057!2.14e-19!42;CL:0000766!1.54e-17!76;CL:0000860!4.06e-17!45;CL:0002194!2.47e-16!63;CL:0000576!2.47e-16!63;CL:0000040!2.47e-16!63;CL:0000559!2.47e-16!63;CL:0002009!5.55e-15!65;CL:0000557!1.93e-13!71;CL:0000839!5.93e-13!70;CL:0000542!4.36e-12!53;CL:0000051!4.36e-12!53;CL:0000838!7.58e-12!52;CL:0000763!2.75e-09!112;CL:0000049!2.75e-09!112;CL:0002393!4.76e-07!9;CL:0002397!4.76e-07!9;CL:0000945!6.60e-07!24;CL:0000826!6.60e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0000576;9.17e-19;48!CL:0000860;8.56e-17;33!CL:0002057;8.56e-17;33!CL:0000473;3.39e-14;39!CL:0000234;3.39e-14;39!CL:0002087;4.90e-13;104!CL:0000766;1.91e-12;69!CL:0000738;1.21e-09;136!CL:0002393;3.27e-09;6!CL:0002397;3.27e-09;6!CL:0000791;4.69e-08;18!CL:0000789;4.69e-08;18!CL:0002419;4.69e-08;18!CL:0000624;5.33e-08;6!CL:0000094;1.92e-07;8!CL:0000542;3.66e-07;53!CL:0000084;4.49e-07;25!CL:0000988;9.17e-07;177 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,7.25e-40,136;CL:0002087,1.42e-37,115;CL:0000037,5.19e-31,168;CL:0002031,6.20e-31,120;CL:0000860,6.34e-30,42;CL:0002057,6.34e-30,42;CL:0000988,3.06e-28,177;CL:0000473,6.26e-28,48;CL:0000234,6.26e-28,48;CL:0002032,1.45e-27,161;CL:0000837,1.45e-27,161;CL:0000766,1.21e-25,72;CL:0002194,6.64e-23,59;CL:0000576,6.64e-23,59;CL:0000040,6.64e-23,59;CL:0000559,6.64e-23,59;CL:0002009,8.87e-22,61;CL:0000557,3.16e-20,67;CL:0000839,2.85e-19,66;CL:0000763,2.71e-15,108;CL:0000049,2.71e-15,108;CL:0002393,2.25e-13,9;CL:0002397,2.25e-13,9;CL:0000838,2.09e-12,52;CL:0000542,5.04e-12,53;CL:0000051,5.04e-12,53;CL:0000624,2.17e-08,6;CL:0000791,5.15e-08,18;CL:0000789,5.15e-08,18;CL:0002420,5.15e-08,18;CL:0002419,5.15e-08,18;CL:0000790,5.15e-08,18;CL:0000094,2.23e-07,8;CL:0002320,2.92e-07,361;CL:0000134,5.29e-07,354;CL:0000084,5.38e-07,25;CL:0000827,5.38e-07,25 | |||
|ontology_enrichment_development_v019=CL:0002057;1.20e-20;42!CL:0000790;4.69e-08;18!CL:0000051;3.66e-07;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.78e-18!102;UBERON:0003061!1.78e-18!102;UBERON:0002193!2.23e-16!112;UBERON:0007023!1.11e-11!115;UBERON:0002371!6.29e-11!80;UBERON:0001474!4.97e-09!86;UBERON:0002405!4.04e-07!115;UBERON:0004765!4.88e-07!101;UBERON:0001434!4.88e-07!101 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;2.41e-10;15!UBERON:0000179;2.41e-10;15!UBERON:0000463;2.41e-10;15!UBERON:0002390;5.72e-09;32!UBERON:0004177;1.48e-07;5!UBERON:0005057;1.48e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.88e-31,98;UBERON:0003061,1.88e-31,98;UBERON:0002193,1.28e-29,108;UBERON:0002405,5.93e-21,93;UBERON:0002371,1.77e-16,76;UBERON:0001474,1.85e-14,82;UBERON:0004765,5.42e-14,90;UBERON:0003081,7.21e-13,203;UBERON:0001434,1.77e-11,100;UBERON:0000178,8.93e-11,15;UBERON:0000179,8.93e-11,15;UBERON:0000463,8.93e-11,15;UBERON:0004177,6.34e-10,7;UBERON:0005057,6.34e-10,7 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0.704772020479856,2.00146596706261,0.893922188854576,0,0,0.631719873426831,0.522371256399677,0,0,0,0,0.123766352960047,1.32558950291166,0,0,0,0,0,0.204000691244253,0,0,0,0.251085279189606,0.687720651731561,0.328402357799783,1.10195093839151,0.393364276848904,0.383829398097213,1.23852898652861,0,0,0.369754010166788,0.387336002901508,2.55904618477359,0.293600439334847,3.32397245119126,1.00272223735071,2.38711957787437,1.34349284543955,0.32389366601898,1.80302897343931,4.65274364094607,3.77875943688809,5.57943340731977,1.39457422143411,0.822335776043652,2.16794459626573,2.01384674625505,0.768482119587302,0.709446689665756,2.06847408441971,1.93645405075148,1.35426486594342,2.82363509313907,1.63743690034707,1.34834090667051,1.22433556948361,0.962787081228281,3.19668562899521,1.64925650093358,0.997318288108159,1.70489900213078,0.870627715885752,1.70215567407342,0,1.7587406567972,1.0429658368404,1.3031330682307,1.81619850790011,0,0.949387162322653,2.74631872205524,3.82687739937078,2.09658645508376,1.79725809834392,2.10247649978109,2.57160938715328,4.84521664360123,4.57508357557907,4.20127553658658,1.75996244461323,0.546138611262131,0.889509253863555,1.70692089026603,0.800791974072025,1.14950487990897,1.98313461835459,0,5.12291672198504,2.93618594685469,7.26319133437935,3.96513985737078,0,0.526768169550154,2.9506465517075,1.57204305099666,1.43921049299656,0.668745981562712,3.2592226663359,3.78758244587787,0,0.557052284425868,1.17842362989935,0.221533894583621,0.270803863765016,0.896639238079726,0.520237390239513,0.657751618414705,1.10540007114339,0.289803085735052,2.52087157375503,4.0131124213457,3.1360657141493,0.453237370790265,1.91610246800961,1.37450978193052,1.01207876807801,1.27426165729639,0,0.950452044448374,0.602300476311091,1.02389288923535,0,1.18388626022008,0.821127996921047,1.20964045934839,0.534880391567015,1.44824403882799,0,0,0.383587685530591,0,0.50133791063589,0,0,0,0.0945348171640679,0,0.175669571386252,0.327447688744282,0,0,0.649094787309367,0.174129737299267,0.398873881556595,0.953962497221368,1.14398982156026,2.60020250930695,0.993812036833525,0,0,1.13061588384802,0,0.275118041940067,0.208994966536811,0,0,0,0,0,0,0.735326160691737,0,0.267899184852239,1.12264686313085,0.788280363383256,0,1.89853131913626,0.549605231791222,10.5424333948851,27.1446184903828,0,0,0.12663051166458,0,0,1.06400514659507,0.560677600142307,0,0,0.933633106199299,0.404132016209064,0,0.302714855289863,0.576175924479999,0.234321431833797,0,0,0,0,0,0,0,0,0.723280468230358,0,0.494533858557114,0,0,0,0,0.554128230968366,0,0,0.300476117813194,0,0,0,0,0,0.103052529238439,0,0,0.337552664482532,0.0974370051611986,0,0,0.323292113637624,0,0.10075209822764,0,0,0,0.286804595389004,0.365921118388786,0.265059536642971,0.116193942869518,0.207322110030741,0,0.72995471815166,1.56449532329816,0,0,0,0.721879481669586,0.118306800039844,0.168584690078102,0.241011029883482,0.110293972732394,0,0,0.134831308160164,0.196221465125346,0,0,0,0,0,0,0,0,0.882926198829301,0,0,0.109750285408626,0,0,0,0,0,1.44331342025273,0.115930404975077,0,0.866198686566443,0,0.190254152234598,0,0.858486162094873,0.738651018262192,0.468008530278475,0.445893486866185,0,0,0.141775097242386,0,0.290633938513962,0,0,0.264145302039678,0.207328115540772,0,0,0.063497894292169,0,0,0,0.308482478109971,0,0,0.224262168690721,0.43596006883328,0.07333828582095,0.129271715757778,0,0.845302752556,0.26593811658487,0,0.257207374262142,0,0,0,0,0,0,0,0.791951872933429,0,0,0.199945982364114,1.2162378064119,1.00451418286425,0,0,0,0,0,0.205476322550383,0.179060963239896,1.2329365839288,1.77327684181734,1.2937654491571,0.641715181398742,0.254094624222463,0,0,0,0,16.478154526838,11.966458368161,21.9640222121099,1.59498939234882,0.500170521059677,0,0.415941723061614,0.178428988797162,0,0,0.601892199455438,0,0,0,0.184369168541703,0.0868836144680828,0.587403472388222,0,1.44737618286021,2.37285620900479,2.77491650288955,0,0,0,0,0.306923946576125,0.280660094433074,0,0,0,0,0,0,0.246381468041427,0,0.232420756919918,0,0.40101294060657,0.276242966807689,0.229628896329213,0,0.393373244878272,0,0.231046011313244,0,0,0.105551628892876,1.13733384070897,0,0,0,0,0,1.27438136522519,2.49322802678617,0.223874754722178,0,0,0.769350375349168,0,0,0.206082023295445,0,0.165018999841176,0,0.650060246036521,0,0,0.462145851343933,0,0,0.214840489736547,0.290033387828457,0.255679882248303,0.267096106940212,0,0.192190067365106,0.127612712494584,0.2023155617111,0,0,0,0,0,0,0,0.143124886741991,0,0,0.190630193923825,0,1.28381696410176,0.636406495851874,0,0.359744915166629,0.54907405947211,0.353437207037059,0.202182481573316,0,0,0.48763373908959,0.487426979262569,0,0,0.282810863907425,0,0,0,0.876901770507525,0,0.655894752046633,0.405820753925408,0.30982349809975,0,0,0,0,0,0.211107635297664,0.329294892959902,0,0.349934720244983,0.288666338176536,0,0,0.376575203107117,0,0,0,0,3.55213326462519,3.0585488285695,7.40541343326411,1.66762242820452,2.87953591160336,1.94541993357815,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| ||
|short_description=p6@SSH2 | |||
}} | }} |
Latest revision as of 09:26, 19 September 2015
Short description: | p6@SSH2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_SSH2_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | -83bp_to_uc002heq.2_5end |
EntrezGene: | SSH2 |
HGNC: | 30580 |
UniProt: | Q76I76 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.88e-31 | 98 |
blood island | 1.88e-31 | 98 |
hemolymphoid system | 1.28e-29 | 108 |
immune system | 5.93e-21 | 93 |
bone marrow | 1.77e-16 | 76 |
bone element | 1.85e-14 | 82 |
skeletal element | 5.42e-14 | 90 |
lateral plate mesoderm | 7.21e-13 | 203 |
skeletal system | 1.77e-11 | 100 |
blood | 8.93e-11 | 15 |
haemolymphatic fluid | 8.93e-11 | 15 |
organism substance | 8.93e-11 | 15 |
hemopoietic organ | 6.34e-10 | 7 |
immune organ | 6.34e-10 | 7 |