FFCP PHASE1:Hg19::chr17:40575209..40575222,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:40575209..40575222,-
|short_description=p2@PTRF
|description=CAGE_peak_2_at_PTRF_5end
|association_with_transcript=50bp_to_uc010wgi.1_5end
|EntrezGene=28...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=284119 | |EntrezGene=284119 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9688 | |HGNC=9688 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=50bp_to_uc010wgi.1_5end | |||
|cluster_id=chr17:40575209..40575222,- | |||
|coexpression_cluster_id=C1780 | |||
|description=CAGE_peak_2_at_PTRF_5end | |||
|id=chr17:40575209..40575222,- | |||
|ontology_enrichment_celltype=CL:0000055!8.07e-38!180;CL:0000057!4.09e-22!75;CL:0000222!3.12e-20!119;CL:0000680!2.82e-18!57;CL:0000056!2.82e-18!57;CL:0000355!2.82e-18!57;CL:0000183!1.37e-17!59;CL:0000187!2.63e-17!54;CL:0000192!2.39e-14!42;CL:0000514!2.39e-14!42;CL:0000393!2.97e-14!60;CL:0000211!2.97e-14!60;CL:0000359!2.02e-11!32;CL:0000220!5.70e-11!246;CL:0002321!1.75e-10!248;CL:0000136!3.74e-10!15;CL:0002620!8.95e-08!23;CL:0002334!6.68e-07!12 | |||
|ontology_enrichment_celltype_v019=CL:0000192;1.82e-11;43!CL:0000359;4.11e-11;32!CL:0000187;2.17e-10;55!CL:0000057;2.58e-09;73!CL:0000136;3.73e-09;13!CL:0000393;4.24e-08;61!CL:0000211;4.24e-08;61!CL:0002620;6.31e-08;23!CL:0002320;3.85e-07;188!CL:0002334;4.63e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,6.50e-23,76;CL:0000222,2.23e-21,121;CL:0000680,2.39e-19,58;CL:0000056,2.39e-19,58;CL:0000355,2.39e-19,58;CL:0000187,2.40e-18,55;CL:0000192,2.65e-15,43;CL:0000514,2.65e-15,43;CL:0000393,7.13e-15,61;CL:0000211,7.13e-15,61;CL:0000359,1.08e-11,32;CL:0000136,2.16e-10,15;CL:0002321,8.77e-10,250;CL:0002620,6.02e-08,23;CL:0002334,4.74e-07,12;CL:0000499,9.43e-07,28 | |||
|ontology_enrichment_development_v019=CL:0000514;1.82e-11;43!CL:0000355;1.90e-10;58 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!6.11e-23!83;UBERON:0002329!6.11e-23!83;UBERON:0003077!6.11e-23!83;UBERON:0003059!6.11e-23!83;UBERON:0007282!6.11e-23!83;UBERON:0009618!6.11e-23!83;UBERON:0007285!6.11e-23!83;UBERON:0004290!3.16e-21!70;UBERON:0000486!6.89e-20!82;UBERON:0002385!7.08e-20!63;UBERON:0001015!7.08e-20!63;UBERON:0000383!7.08e-20!63;UBERON:0001134!1.30e-19!61;UBERON:0002036!1.30e-19!61;UBERON:0003082!1.30e-19!61;UBERON:0000475!2.48e-19!365;UBERON:0004872!4.63e-19!84;UBERON:0002049!1.80e-18!79;UBERON:0007798!1.80e-18!79;UBERON:0005256!9.65e-18!143;UBERON:0000055!9.48e-17!69;UBERON:0001981!9.84e-17!60;UBERON:0007500!9.84e-17!60;UBERON:0004537!9.84e-17!60;UBERON:0006965!9.84e-17!60;UBERON:0002100!9.11e-16!216;UBERON:0001637!4.78e-15!42;UBERON:0003509!4.78e-15!42;UBERON:0004572!4.78e-15!42;UBERON:0000481!8.06e-15!347;UBERON:0003914!1.48e-13!118;UBERON:0001009!1.95e-13!113;UBERON:0000468!2.34e-13!659;UBERON:0000119!2.43e-13!312;UBERON:0000483!2.89e-13!309;UBERON:0000490!3.70e-13!138;UBERON:0004535!4.35e-13!110;UBERON:0004573!7.10e-13!33;UBERON:0004571!7.10e-13!33;UBERON:0000477!7.36e-13!286;UBERON:0003104!7.71e-13!238;UBERON:0009142!7.71e-13!238;UBERON:0003102!1.63e-12!95;UBERON:0000467!3.69e-10!625;UBERON:0004111!4.53e-10!241;UBERON:0000480!6.43e-10!626;UBERON:0002199!3.20e-08!45;UBERON:0002416!3.20e-08!45;UBERON:0001013!4.48e-08!14;UBERON:0007100!7.01e-08!27;UBERON:0000948!1.10e-07!24;UBERON:0005498!1.10e-07!24;UBERON:0004140!1.10e-07!24;UBERON:0009881!1.10e-07!24;UBERON:0004141!1.10e-07!24;UBERON:0003084!1.10e-07!24;UBERON:0007005!1.10e-07!24;UBERON:0004139!1.10e-07!24;UBERON:0004291!1.10e-07!24;UBERON:0000947!2.21e-07!21;UBERON:0010191!2.21e-07!21;UBERON:0003103!2.65e-07!69;UBERON:0000926!5.18e-07!448;UBERON:0004120!5.18e-07!448;UBERON:0006603!5.18e-07!448 | |||
|ontology_enrichment_uberon_v019=UBERON:0004573;6.91e-12;33!UBERON:0004571;6.91e-12;33!UBERON:0001637;3.40e-11;42!UBERON:0003509;3.40e-11;42!UBERON:0004572;3.40e-11;42!UBERON:0007500;3.35e-09;56!UBERON:0001981;3.35e-09;56!UBERON:0004537;3.35e-09;56!UBERON:0002385;6.76e-09;31!UBERON:0001015;6.76e-09;31!UBERON:0000383;6.76e-09;31!UBERON:0001013;2.89e-08;14!UBERON:0000055;4.69e-08;65!UBERON:0002384;9.78e-08;198!UBERON:0002049;1.47e-07;75!UBERON:0007798;1.47e-07;75!UBERON:0000947;1.50e-07;21!UBERON:0010191;1.50e-07;21!UBERON:0007100;2.31e-07;25!UBERON:0000948;3.71e-07;22 | |||
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| ||
|short_description=p2@PTRF | |||
}} | }} |
Latest revision as of 14:48, 24 September 2015
Short description: | p2@PTRF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_PTRF_5end |
Coexpression cluster: | C1780_Mesenchymal_tenocyte_Osteoblast_Smooth_mature_Synoviocyte_Chondrocyte |
Association with transcript: | 50bp_to_uc010wgi.1_5end |
EntrezGene: | PTRF |
HGNC: | 9688 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 6.50e-23 | 76 |
mesodermal cell | 2.23e-21 | 121 |
muscle precursor cell | 2.39e-19 | 58 |
myoblast | 2.39e-19 | 58 |
multi-potent skeletal muscle stem cell | 2.39e-19 | 58 |
muscle cell | 2.40e-18 | 55 |
smooth muscle cell | 2.65e-15 | 43 |
smooth muscle myoblast | 2.65e-15 | 43 |
electrically responsive cell | 7.13e-15 | 61 |
electrically active cell | 7.13e-15 | 61 |
vascular associated smooth muscle cell | 1.08e-11 | 32 |
fat cell | 2.16e-10 | 15 |
embryonic cell | 8.77e-10 | 250 |
skin fibroblast | 6.02e-08 | 23 |
preadipocyte | 4.74e-07 | 12 |
stromal cell | 9.43e-07 | 28 |