FF:10415-106C1: Difference between revisions

Latest revision as of 14:00, 3 June 2020

Name:	gall bladder carcinoma cell line:TGBC2TKB
Species:	Human (Homo sapiens)
Library ID:	CNhs10733
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	gall bladder
dev stage	NA
sex	female
age	unknown
cell type	unclassifiable
cell line	TGBC2TKB
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005593

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10733		CAGE		DRX007889		DRR008761

Accession ID Hg19

Library id		BAM		CTSS
CNhs10733		DRZ000186		DRZ001571

Accession ID Hg38

Library id		BAM		CTSS
CNhs10733		DRZ011536		DRZ012921

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0502
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.0939
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.191
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.0167
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0294
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.0334
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.139
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.236
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.555
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.021
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0.0335
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.0335
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.00122
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.0364
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0.0335
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.0335
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.256
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.373
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10733

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.66
MA0003.1	MA0003.1	0.55
MA0004.1	MA0004.1	0.525
MA0006.1	MA0006.1	0.469
MA0007.1	MA0007.1	0.504
MA0009.1	MA0009.1	0.434
MA0014.1	MA0014.1	0.0704
MA0017.1	MA0017.1	0.691
MA0018.2	MA0018.2	0.637
MA0019.1	MA0019.1	0.454
MA0024.1	MA0024.1	0.652
MA0025.1	MA0025.1	0.174
MA0027.1	MA0027.1	0.764
MA0028.1	MA0028.1	7.2445e-9
MA0029.1	MA0029.1	0.571
MA0030.1	MA0030.1	0.315
MA0031.1	MA0031.1	0.559
MA0035.2	MA0035.2	0.92
MA0038.1	MA0038.1	0.0758
MA0039.2	MA0039.2	4.8828e-4
MA0040.1	MA0040.1	0.833
MA0041.1	MA0041.1	0.313
MA0042.1	MA0042.1	0.732
MA0043.1	MA0043.1	0.0255
MA0046.1	MA0046.1	0.106
MA0047.2	MA0047.2	0.263
MA0048.1	MA0048.1	0.311
MA0050.1	MA0050.1	0.942
MA0051.1	MA0051.1	0.055
MA0052.1	MA0052.1	0.0163
MA0055.1	MA0055.1	0.00171
MA0057.1	MA0057.1	0.502
MA0058.1	MA0058.1	0.436
MA0059.1	MA0059.1	0.97
MA0060.1	MA0060.1	0.039
MA0061.1	MA0061.1	0.317
MA0062.2	MA0062.2	1.24398e-6
MA0065.2	MA0065.2	0.234
MA0066.1	MA0066.1	0.892
MA0067.1	MA0067.1	0.396
MA0068.1	MA0068.1	6.63606e-4
MA0069.1	MA0069.1	0.731
MA0070.1	MA0070.1	0.285
MA0071.1	MA0071.1	0.212
MA0072.1	MA0072.1	0.67
MA0073.1	MA0073.1	0.439
MA0074.1	MA0074.1	0.435
MA0076.1	MA0076.1	1.04826e-6
MA0077.1	MA0077.1	0.184
MA0078.1	MA0078.1	0.596
MA0079.2	MA0079.2	0.179
MA0080.2	MA0080.2	0.00222
MA0081.1	MA0081.1	0.298
MA0083.1	MA0083.1	0.48
MA0084.1	MA0084.1	0.754
MA0087.1	MA0087.1	0.149
MA0088.1	MA0088.1	0.626
MA0090.1	MA0090.1	2.57356e-4
MA0091.1	MA0091.1	0.0379
MA0092.1	MA0092.1	0.885
MA0093.1	MA0093.1	0.692
MA0099.2	MA0099.2	3.33579e-14
MA0100.1	MA0100.1	0.714
MA0101.1	MA0101.1	0.00415
MA0102.2	MA0102.2	0.748
MA0103.1	MA0103.1	1.32532e-6
MA0104.2	MA0104.2	0.865
MA0105.1	MA0105.1	0.831
MA0106.1	MA0106.1	0.904
MA0107.1	MA0107.1	0.0288
MA0108.2	MA0108.2	0.293
MA0111.1	MA0111.1	0.277
MA0112.2	MA0112.2	0.282
MA0113.1	MA0113.1	0.183
MA0114.1	MA0114.1	0.0635
MA0115.1	MA0115.1	0.947
MA0116.1	MA0116.1	0.0818
MA0117.1	MA0117.1	0.699
MA0119.1	MA0119.1	0.466
MA0122.1	MA0122.1	0.731
MA0124.1	MA0124.1	0.309
MA0125.1	MA0125.1	0.63
MA0131.1	MA0131.1	0.61
MA0135.1	MA0135.1	0.431
MA0136.1	MA0136.1	0.218
MA0137.2	MA0137.2	2.34054e-5
MA0138.2	MA0138.2	0.113
MA0139.1	MA0139.1	2.50149e-4
MA0140.1	MA0140.1	0.38
MA0141.1	MA0141.1	0.158
MA0142.1	MA0142.1	0.91
MA0143.1	MA0143.1	0.479
MA0144.1	MA0144.1	0.00144
MA0145.1	MA0145.1	0.117
MA0146.1	MA0146.1	0.71
MA0147.1	MA0147.1	0.991
MA0148.1	MA0148.1	0.0304
MA0149.1	MA0149.1	0.145
MA0150.1	MA0150.1	7.46974e-5
MA0152.1	MA0152.1	0.208
MA0153.1	MA0153.1	0.499
MA0154.1	MA0154.1	0.974
MA0155.1	MA0155.1	0.163
MA0156.1	MA0156.1	0.0418
MA0157.1	MA0157.1	0.536
MA0159.1	MA0159.1	0.269
MA0160.1	MA0160.1	0.903
MA0162.1	MA0162.1	0.856
MA0163.1	MA0163.1	0.0152
MA0164.1	MA0164.1	0.953
MA0258.1	MA0258.1	0.664
MA0259.1	MA0259.1	0.886

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10733

Novel motif	Logo	P-value
1	1	0.944
10	10	0.212
100	100	0.637
101	101	0.237
102	102	0.987
103	103	0.778
104	104	0.814
105	105	0.198
106	106	0.145
107	107	0.569
108	108	0.18
109	109	0.913
11	11	0.239
110	110	0.586
111	111	0.198
112	112	0.118
113	113	0.0287
114	114	0.892
115	115	0.132
116	116	0.0954
117	117	0.121
118	118	0.503
119	119	0.653
12	12	0.454
120	120	0.279
121	121	0.484
122	122	0.952
123	123	0.0141
124	124	0.082
125	125	0.276
126	126	0.167
127	127	0.444
128	128	0.188
129	129	0.404
13	13	0.135
130	130	0.466
131	131	0.208
132	132	0.235
133	133	0.0115
134	134	0.638
135	135	0.614
136	136	0.145
137	137	0.0615
138	138	0.959
139	139	0.201
14	14	0.625
140	140	0.113
141	141	0.921
142	142	0.65
143	143	0.76
144	144	0.255
145	145	0.0838
146	146	0.339
147	147	0.785
148	148	0.505
149	149	0.261
15	15	0.723
150	150	0.704
151	151	0.748
152	152	0.374
153	153	0.441
154	154	0.499
155	155	0.558
156	156	0.144
157	157	0.398
158	158	0.764
159	159	0.868
16	16	0.63
160	160	0.204
161	161	0.839
162	162	0.498
163	163	0.326
164	164	0.416
165	165	0.914
166	166	0.453
167	167	0.252
168	168	0.82
169	169	0.971
17	17	0.693
18	18	0.61
19	19	0.684
2	2	0.737
20	20	0.0925
21	21	0.884
22	22	0.235
23	23	0.741
24	24	0.262
25	25	0.299
26	26	0.586
27	27	0.194
28	28	0.135
29	29	0.803
3	3	0.611
30	30	0.249
31	31	0.369
32	32	3.69568e-4
33	33	0.28
34	34	0.25
35	35	0.0445
36	36	0.782
37	37	0.982
38	38	0.855
39	39	0.901
4	4	0.301
40	40	0.887
41	41	0.159
42	42	0.618
43	43	0.197
44	44	0.691
45	45	0.125
46	46	0.196
47	47	0.868
48	48	0.966
49	49	0.141
5	5	0.935
50	50	0.537
51	51	0.942
52	52	0.334
53	53	0.303
54	54	0.873
55	55	0.972
56	56	0.679
57	57	0.908
58	58	0.605
59	59	0.65
6	6	0.895
60	60	0.298
61	61	0.195
62	62	0.189
63	63	0.433
64	64	0.537
65	65	0.486
66	66	0.0046
67	67	0.433
68	68	0.0525
69	69	0.261
7	7	0.899
70	70	0.23
71	71	0.789
72	72	0.907
73	73	0.925
74	74	0.289
75	75	0.114
76	76	0.841
77	77	0.316
78	78	0.256
79	79	0.0256
8	8	0.237
80	80	0.787
81	81	0.00838
82	82	0.00176
83	83	0.647
84	84	0.493
85	85	0.0584
86	86	0.567
87	87	0.124
88	88	0.504
89	89	0.76
9	9	0.3
90	90	0.266
91	91	0.0325
92	92	0.432
93	93	0.965
94	94	0.174
95	95	0.741
96	96	0.579
97	97	0.182
98	98	0.091
99	99	0.413

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10733

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
CL:1000415 epithelial cell of gall bladder
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0100297 carcinoma cell line sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
1000415 (epithelial cell of gall bladder)

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
305 (carcinoma)

UBERON: Anatomy
0000468 (multi-cellular organism)
0002110 (gallbladder)
0002100 (trunk)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000466 (immaterial anatomical entity)
0002075 (viscus)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0002553 (anatomical cavity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002323 (body cavity)
0005177 (trunk region element)
0005172 (abdomen element)
0000464 (anatomical space)
0004458 (body cavity or lining)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0002294 (biliary system)
0001173 (biliary tree)
0000916 (abdomen)
0002423 (hepatobiliary system)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100297 (carcinoma cell line sample)
0101120 (epithelial cell line sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
NA

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000025,UBERON:0000061,UBERON:0000062,UBERON:0000077,UBERON:0000119,UBERON:0000464,UBERON:0000465,UBERON:0000466,UBERON:0000467,UBERON:0000468,UBERON:0000475,UBERON:0000479,UBERON:0000480,UBERON:0000481,UBERON:0000483,UBERON:0000916,UBERON:0000922,UBERON:0000923,UBERON:0000925,UBERON:0000926,UBERON:0001007,UBERON:0001041,UBERON:0001062,UBERON:0001173,UBERON:0001555,UBERON:0002050,UBERON:0002075,UBERON:0002100,UBERON:0002110,UBERON:0002294,UBERON:0002323,UBERON:0002417,UBERON:0002423,UBERON:0002532,UBERON:0002553,UBERON:0003104,UBERON:0003914,UBERON:0004119,UBERON:0004120,UBERON:0004161,UBERON:0004185,UBERON:0004458,UBERON:0004912,UBERON:0004921,UBERON:0005172,UBERON:0005173,UBERON:0005177,UBERON:0005256,UBERON:0005423,UBERON:0005911,UBERON:0007026,UBERON:0009142
+|DRA_sample_Accession=CAGE@SAMD00005593
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000004,CL:0000012,CL:0000063,CL:0000066,CL:0000255,CL:0000548
+|accession_numbers=CAGE;DRX007889;DRR008761;DRZ000186;DRZ001571;DRZ011536;DRZ012921
-|ancestors_in_disease_facet=DOID:0050687,DOID:14566,DOID:162,DOID:305,DOID:4
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002110,UBERON:0002100,UBERON:0001007,UBERON:0004119,UBERON:0000466,UBERON:0002075,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0002553,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002323,UBERON:0005177,UBERON:0005172,UBERON:0000464,UBERON:0004458,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0002294,UBERON:0001173,UBERON:0000916,UBERON:0002423
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000255,CL:1000415
+|ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:305
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0100297,FF:0101120
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr11:34642612..34642646,+!p1@EHF!2.11!126.89!EHF;;chr11:34645791..34645836,+!p3@EHF!1.76!56.59!EHF;;chr13:36788658..36788703,-!p2@CCDC169-SOHLH2,p2@SOHLH2!1.65!43.69!SOHLH2;;chr6:10415276..10415341,-!p2@TFAP2A!1.54!40.72!TFAP2A;;chr6:1312325..1312340,+!p1@FOXQ1!1.49!48.34!FOXQ1;;chr7:27153454..27153469,-!p2@HOXA3!1.44!26.61!HOXA3;;chr6:10412600..10412637,-!p1@TFAP2A!1.39!38.56!TFAP2A;;chr7:26191809..26191890,+!p1@NFE2L3!1.38!109.34!NFE2L3;;chr1:201979743..201979762,+!p1@ELF3!1.34!21.08!ELF3;;chr11:46299199..46299233,+!p1@CREB3L1!1.32!100.52!CREB3L1;;chr8:72756063..72756125,-!p1@MSC!1.28!36.47!MSC;;chr8:55370487..55370503,+!p1@SOX17!1.27!17.55!SOX17;;chr6:45390025..45390076,+!p2@RUNX2!1.25!40.32!RUNX2;;chr6:45390300..45390335,+!p4@RUNX2!1.25!26.05!RUNX2;;chr8:72755987..72756002,-!p7@MSC!1.25!16.83!MSC;;chr6:10412392..10412409,-!p4@TFAP2A!1.21!17.47!TFAP2A;;chr7:28448965..28448994,+!p2@CREB5!1.20!51.78!CREB5;;chr17:46682321..46682362,-!p1@HOXB6!1.20!14.67!HOXB6;;chr12:66218598..66218645,+!p2@HMGA2!1.17!63.97!HMGA2;;chr8:72756637..72756664,-!p3@MSC!1.16!15.31!MSC;;chr6:45390077..45390105,+!p9@RUNX2!1.15!16.67!RUNX2;;chr11:34642656..34642667,+!p2@EHF!1.14!12.67!EHF;;chr1:201979703..201979721,+!p2@ELF3!1.13!12.42!ELF3;;chr1:209979467..209979494,-!p1@IRF6!1.11!13.23!IRF6;;chr12:66218255..66218304,+!p3@HMGA2!1.04!26.85!HMGA2;;chr17:46703687..46703740,-!p1@HOXB9!1.04!10.02!HOXB9;;chr6:45390343..45390388,+!p10@RUNX2!1.02!12.99!RUNX2;;chr18:55102598..55102623,+!p1@ONECUT2!1.02!9.54!ONECUT2;;chr18:55102628..55102646,+!p2@ONECUT2!1.02!9.46!ONECUT2;;chr14:38064429..38064486,-!p1@FOXA1!1.02!9.38!FOXA1;;chr6:10415484..10415508,-!p3@TFAP2A!1.01!9.22!TFAP2A;;chr5:72744445..72744466,-!p2@FOXD1!1.00!15.23!FOXD1;;chr6:45390269..45390298,+!p5@RUNX2!1.00!14.99!RUNX2;;chr6:45390002..45390023,+!p6@RUNX2!0.99!15.23!RUNX2;;chr19:45908292..45908374,-!p1@PPP1R13L!0.98!76.87!PPP1R13L;;chr12:27485762..27485776,+!p3@ARNTL2!0.97!22.77!ARNTL2;;chr14:62162285..62162296,+!p3@HIF1A!0.96!43.21!HIF1A;;chr7:115670804..115670825,-!p1@TFEC!0.96!8.18!TFEC;;chr8:72756023..72756055,-!p6@MSC!0.94!9.78!MSC;;chr8:72756667..72756736,-!p2@MSC!0.93!11.86!MSC;;chr11:65667884..65667895,-!p2@FOSL1!0.92!29.58!FOSL1;;chr11:61520075..61520136,+!p1@C11orf9!0.92!16.11!C11orf9;;chr6:10412576..10412599,-!p5@TFAP2A!0.92!7.37!TFAP2A;;chr14:62162258..62162269,+!p2@HIF1A!0.91!71.58!HIF1A;;chr7:17338324..17338341,+!p3@AHR!0.91!24.85!AHR;;chr17:46688334..46688385,-!p1@HOXB7!0.91!10.50!HOXB7;;chr3:114343768..114343822,-!p1@ZBTB20!0.90!31.66!ZBTB20;;chr19:45971246..45971265,+!p1@FOSB!0.88!129.06!FOSB;;chr5:134369905..134369972,-!p1@PITX1!0.88!10.34!PITX1;;chr6:34204921..34204939,+!p3@HMGA1!0.86!197.99!HMGA1;;chr7:17338266..17338282,+!p1@AHR!0.86!70.86!AHR;;chr19:45252008..45252024,+!p2@BCL3!0.85!21.32!BCL3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!0.85!6.01!ZBED1;;chr12:66218573..66218596,+!p7@HMGA2!0.84!9.14!HMGA2;;chr8:72756267..72756296,-!p4@MSC!0.83!8.74!MSC;;chr3:25469724..25469773,+!p1@RARB!0.83!8.50!RARB;;chr11:65667846..65667868,-!p1@FOSL1!0.82!160.48!FOSL1;;chr6:45390137..45390148,+!p12@RUNX2!0.82!5.61!RUNX2;;chr17:70117153..70117174,+!p1@SOX9!0.81!60.12!SOX9;;chr9:16705069..16705086,-!p3@BNC2!0.81!5.53!BNC2;;chr1:6479968..6479986,-!p1@HES2!0.81!5.53!HES2;;chr13:73633131..73633149,+!p1@KLF5!0.80!61.72!KLF5;;chr12:26277956..26277980,-!p1@BHLHE41!0.80!20.68!BHLHE41;;chr6:45390399..45390418,+!p15@RUNX2!0.80!5.29!RUNX2;;chr18:19749541..19749557,+!p1@GATA6!0.79!17.31!GATA6;;chr1:158979872..158979898,+!p3@IFI16!0.79!16.91!IFI16;;chr19:53636125..53636178,-!p1@ZNF415!0.79!15.79!ZNF415;;chr3:21792631..21792665,-!p3@ZNF385D!0.79!5.13!ZNF385D;;chr3:32023232..32023273,+!p1@ZNF860!0.78!7.45!ZNF860;;chr7:27153428..27153440,-!p3@HOXA3!0.78!5.05!HOXA3;;chr9:22447422..22447483,+!p1@DMRTA1!0.78!5.05!DMRTA1;;chr11:46299539..46299620,+!p2@CREB3L1!0.77!8.58!CREB3L1;;chr6:10413188..10413249,-!p7@TFAP2A!0.77!4.89!TFAP2A;;chr5:321810..321877,+!p1@AHRR!0.76!16.51!AHRR;;chr1:44513995..44514031,+!p1@KLF17!0.76!4.81!KLF17;;chr8:102504651..102504683,+!p1@GRHL2!0.76!4.73!GRHL2;;chr20:48599506..48599526,+!p1@SNAI1!0.75!32.70!SNAI1;;chr19:53496768..53496799,-!p1@ZNF702P!0.75!7.53!ZNF702P;;chr12:66218212..66218244,+!p5@HMGA2!0.75!7.05!HMGA2;;chr12:26277817..26277863,-!p2@BHLHE41!0.75!6.49!BHLHE41;;chr4:53206..53260,+!p1@ZNF595,p1@ZNF718!0.74!47.37!ZNF595;;chr7:28725740..28725778,+!p1@CREB5!0.74!45.13!CREB5;;chr12:80084167..80084197,-!p5@PAWR!0.74!11.46!PAWR;;chr6:85473156..85473210,-!p2@TBX18!0.74!5.69!TBX18;;chr1:40105299..40105326,-!p1@HEYL!0.74!4.49!HEYL;;chr5:72744594..72744609,-!p1@FOXD1!0.73!22.36!FOXD1;;chr7:101917407..101917443,+!p3@CUX1!0.73!4.33!CUX1;;chr3:25469815..25469866,+!p3@RARB!0.73!4.33!RARB;;chr6:15246200..15246214,+!p2@JARID2!0.72!12.75!JARID2;;chr6:45390442..45390479,+!p8@RUNX2!0.72!6.81!RUNX2;;chr17:41622765..41622821,-!p2@ETV4!0.72!6.73!ETV4;;chr19:53289995..53290050,-!p1@ZNF600!0.71!18.84!ZNF600;;chr12:66218183..66218209,+!p4@HMGA2!0.71!8.58!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F1!0.21!31.82!ATF1;;chr7:64467057..64467078,-!p1@ZNF117!0.21!26.69!ZNF117;;chr18:47807845..47807918,-!p1@MBD1!0.21!25.01!MBD1;;chr16:31885093..31885165,+!p1@ZNF267!0.21!21.88!ZNF267;;chr10:45496346..45496409,+!p1@ZNF22!0.21!20.28!ZNF22;;chr4:76439665..76439699,+!p1@THAP6!0.21!19.96!THAP6;;chr16:69419871..69419927,-!p1@TERF2!0.21!19.16!TERF2;;chr19:53935221..53935258,+!p1@ZNF761!0.21!14.03!ZNF761;;chr1:151319710..151319774,-!p1@RFX5!0.21!13.87!RFX5;;chr11:67007477..67007493,+!p2@KDM2A!0.21!12.02!KDM2A;;chr11:123612319..123612395,-!p1@ZNF202!0.21!7.70!ZNF202;;chr9:35732647..35732678,+!p2@CREB3!0.21!7.37!CREB3;;chr11:65686952..65686975,+!p5@DRAP1!0.21!7.29!DRAP1;;chr16:68119324..68119364,+!p1@NFATC3!0.21!5.85!NFATC3;;chr3:71630980..71631110,-!p3@FOXP1!0.21!4.33!FOXP1;;chr19:57751980..57752019,+!p2@ZNF805!0.21!4.17!ZNF805;;chr6:134274295..134274308,+!p2@TBPL1!0.21!4.17!TBPL1;;chr19:44598498..44598529,+!p1@ZNF224!0.21!3.93!ZNF224;;chr16:67062996..67063016,+!p3@CBFB!0.21!3.69!CBFB;;chr18:45457478..45457517,-!p6@SMAD2!0.21!3.53!SMAD2;;chr4:26322267..26322334,+!p3@RBPJ!0.21!2.73!RBPJ;;chr1:42501569..42501614,-!p1@HIVEP3!0.21!2.24!HIVEP3;;chr8:23540441..23540466,-!p1@NKX3-1!0.21!2.16!NKX3-1;;chr10:44101902..44101932,+!p2@ZNF485!0.21!2.16!ZNF485;;chr20:52210368..52210384,-!p1@ZNF217!0.21!2.00!ZNF217;;chr20:50808252..50808264,-!p4@ZFP64!0.21!1.68!ZFP64;;chr9:109625229..109625282,+!p2@ZNF462!0.21!1.60!ZNF462;;chr17:38465413..38465438,+!p5@RARA!0.21!1.52!RARA;;chr15:96874216..96874236,+!p13@NR2F2!0.21!1.44!NR2F2;;chr11:64764435..64764449,-!p1@BATF2!0.21!1.20!BATF2;;chr20:49547674..49547685,-!p7@ADNP!0.21!1.12!ADNP;;chr20:55204351..55204377,+!p1@TFAP2C!0.21!1.04!TFAP2C;;chr7:14028743..14028799,-!p3@ETV1!0.21!1.04!ETV1;;chr17:38497662..38497713,+!p4@RARA!0.21!0.88!RARA;;chr11:85376028..85376035,-!p5@CREBZF!0.21!0.72!CREBZF;;chr21:36260980..36261011,-!p1@RUNX1!0.20!40.64!RUNX1;;chr4:38665810..38665827,+!p1@KLF3!0.20!20.20!KLF3;;chr2:75937994..75938054,-!p1@GCFC2!0.20!19.72!GCFC2;;chr12:498415..498492,-!p1@KDM5A!0.20!15.31!KDM5A;;chr19:56826201..56826247,-!p1@ZSCAN5A!0.20!8.66!ZSCAN5A;;chr9:135282195..135282240,-!p1@TTF1!0.20!7.86!TTF1;;chr19:20748574..20748599,-!p1@ZNF737!0.20!7.86!ZNF737;;chr17:47439568..47439641,-!p2@ZNF652!0.20!7.53!ZNF652;;chr10:94449703..94449718,+!p1@HHEX!0.20!4.73!HHEX;;chr21:27107465..27107557,+!p3@GABPA!0.20!4.49!GABPA;;chr19:53238260..53238312,-!p1@ZNF611!0.20!4.33!ZNF611;;chr1:40997285..40997352,+!p1@ZNF684!0.20!4.25!ZNF684;;chr21:30671690..30671762,+!p2@BACH1!0.20!4.17!BACH1;;chr3:71179746..71179783,-!p7@FOXP1!0.20!4.09!FOXP1;;chr5:43121711..43121753,+!p2@ZNF131!0.20!3.37!ZNF131;;chr12:133758115..133758138,+!p3@ZNF268!0.20!2.65!ZNF268;;chr1:153939955..153940009,+!p2@CREB3L4!0.20!2.57!CREB3L4;;chr22:38598057..38598071,+!p3@MAFF!0.20!2.57!MAFF;;chr2:75937794..75937867,-!p2@GCFC2!0.20!2.40!GCFC2;;chr6:151712800..151712835,-!p2@ZBTB2!0.20!2.40!ZBTB2;;chr12:56753939..56753951,-!p2@STAT2!0.20!2.24!STAT2;;chr5:178157700..178157734,-!p3@ZNF354A!0.20!2.16!ZNF354A;;chr1:61548374..61548415,+!p4@NFIA!0.20!1.84!NFIA;;chr9:14314106..14314119,-!p5@NFIB!0.20!1.76!NFIB;;chr9:73028598..73028617,-!p5@KLF9!0.20!1.60!KLF9;;chr19:12551785..12551823,-!p1@ZNF443!0.20!1.52!ZNF443;;chr1:43148716..43148756,+!p6@YBX1!0.20!0.96!YBX1;;chr15:77713095..77713113,+!p5@HMG20A!0.20!0.88!HMG20A;;chr5:124082279..124082319,-!p3@ZNF608!0.20!0.88!ZNF608;;chr5:137804405..137804444,+!p3@EGR1!0.20!0.88!EGR1;;chr9:4300004..4300015,-!p6@GLIS3!0.20!0.80!GLIS3;;chr13:27998720..27998826,+!p1@GTF3A!0.19!133.62!GTF3A;;chr3:52008016..52008071,-!p1@ABHD14A-ACY1,p1@ABHD14B,p1@PCBP4!0.19!80.48!PCBP4;;chr17:46125707..46125746,+!p2@NFE2L1!0.19!74.07!NFE2L1;;chr8:73921085..73921125,+!p1@TERF1!0.19!39.44!TERF1;;chr22:35653468..35653501,+!p1@HMGXB4!0.19!34.71!HMGXB4;;chr4:57774042..57774114,+!p1@REST!0.19!33.83!REST;;chr3:101395963..101395993,-!p1@ZBTB11!0.19!20.84!ZBTB11;;chr19:57791328..57791377,+!p2@ZNF460!0.19!16.35!ZNF460;;chr19:35168567..35168620,+!p1@ZNF302!0.19!15.63!ZNF302;;chr1:202777592..202777616,-!p2@KDM5B!0.19!14.59!KDM5B;;chr6:33168126..33168180,-!p2@RXRB!0.19!14.11!RXRB;;chr2:231191875..231191918,+!p1@SP140L!0.19!13.07!SP140L;;chr6:116989916..116989979,-!p1@ZUFSP!0.19!12.67!ZUFSP;;chr4:38665769..38665801,+!p2@KLF3!0.19!12.10!KLF3;;chr11:76092097..76092183,-!p1@PRKRIR!0.19!10.58!PRKRIR;;chr19:44507091..44507163,+!p1@ZNF230!0.19!5.45!ZNF230;;chr18:45457423..45457468,-!p5@SMAD2!0.19!4.41!SMAD2;;chr7:99156145..99156207,+!p5@ZNF655!0.19!4.01!ZNF655;;chr19:37341752..37341816,+!p1@ZNF345!0.19!3.45!ZNF345;;chr10:97890024..97890064,+!p2@ZNF518A!0.19!3.05!ZNF518A;;chr19:37958318..37958365,-!p2@ZNF569!0.19!2.89!ZNF569;;chr19:52430697..52430749,+!p1@ZNF613!0.19!2.57!ZNF613;;chr7:99102267..99102304,+!p2@ZKSCAN5!0.19!2.48!ZKSCAN5;;chr2:113033141..113033162,+!p2@ZC3H6!0.19!2.16!ZC3H6;;chr6:26659967..26659982,-!p1@ZNF322P1,p1@ZNF322!0.19!2.08!ZNF322;;chr8:123793959..123793977,+!p4@ZHX2!0.19!1.92!ZHX2;;chr18:74072572..74072588,-!p2@ZNF516!0.19!1.44!ZNF51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@@ Line 35: / Line 40: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/gall%2520bladder%2520carcinoma%2520cell%2520line%253aTGBC2TKB.CNhs10733.10415-106C1.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/gall%2520bladder%2520carcinoma%2520cell%2520line%253aTGBC2TKB.CNhs10733.10415-106C1.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/gall%2520bladder%2520carcinoma%2520cell%2520line%253aTGBC2TKB.CNhs10733.10415-106C1.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/gall%2520bladder%2520carcinoma%2520cell%2520line%253aTGBC2TKB.CNhs10733.10415-106C1.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/gall%2520bladder%2520carcinoma%2520cell%2520line%253aTGBC2TKB.CNhs10733.10415-106C1.hg38.nobarcode.ctss.bed.gz
 |id=FF:10415-106C1
-|is_a=CL:1000415;;EFO:0002091;;FF:0000003;;FF:0000210;;FF:0100297
+|is_a=CL:1000415;;EFO:0002091;;FF:0000210;;FF:0100297
+|is_obsolete=
+|library_id=CNhs10733
+|library_id_phase_based=2:CNhs10733
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10415
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10415
 |name=gall bladder carcinoma cell line:TGBC2TKB
 |namespace=FANTOM5
@@ Line 42: / Line 59: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10733,LSID691,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=106
 |rna_catalog_number=
@@ Line 57: / Line 77: @@
 |rna_weight_ug=38.08725
 |sample_age=unknown
+|sample_category=cell lines
 |sample_cell_catalog=RCB1130
 |sample_cell_line=TGBC2TKB
@@ Line 69: / Line 90: @@
 |sample_ethnicity=J
 |sample_experimental_condition=
+|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.10971134052274e-228!GO:0005737;cytoplasm;2.57885775165427e-186!GO:0043226;organelle;8.16836043018378e-179!GO:0043229;intracellular organelle;2.2822862127184e-178!GO:0043231;intracellular membrane-bound organelle;3.55208882239396e-177!GO:0043227;membrane-bound organelle;5.53898032030429e-177!GO:0044422;organelle part;3.00613395235135e-136!GO:0044446;intracellular organelle part;1.54071634273751e-134!GO:0044444;cytoplasmic part;2.02854253029451e-129!GO:0032991;macromolecular complex;6.75887054667967e-85!GO:0044238;primary metabolic process;1.02045472198206e-80!GO:0044237;cellular metabolic process;5.4403153518221e-80!GO:0005515;protein binding;1.23077527994053e-76!GO:0030529;ribonucleoprotein complex;2.44008344380383e-76!GO:0043170;macromolecule metabolic process;2.73065897641099e-74!GO:0044428;nuclear part;1.60341280544974e-70!GO:0043233;organelle lumen;3.16184555726722e-69!GO:0031974;membrane-enclosed lumen;3.16184555726722e-69!GO:0005634;nucleus;1.20912326436936e-65!GO:0003723;RNA binding;8.14896045177389e-62!GO:0031090;organelle membrane;1.45203563481403e-53!GO:0005739;mitochondrion;1.99615040976771e-52!GO:0016043;cellular component organization and biogenesis;4.32228047924895e-50!GO:0019538;protein metabolic process;9.56539633422193e-49!GO:0033036;macromolecule localization;2.04780419339545e-48!GO:0015031;protein transport;3.27212749750622e-47!GO:0006396;RNA processing;5.8849347655269e-47!GO:0008104;protein localization;9.44302420042879e-45!GO:0045184;establishment of protein localization;1.55543782781316e-44!GO:0006412;translation;2.57245655668614e-44!GO:0005840;ribosome;1.44784744524665e-43!GO:0044267;cellular protein metabolic process;7.52173854593811e-43!GO:0044260;cellular macromolecule metabolic process;9.29081916758759e-43!GO:0031981;nuclear lumen;5.90706582336061e-42!GO:0043234;protein complex;1.08205766196835e-41!GO:0043283;biopolymer metabolic process;9.8250210470556e-41!GO:0005829;cytosol;5.23849446352951e-40!GO:0003735;structural constituent of ribosome;1.02573264703048e-37!GO:0016071;mRNA metabolic process;6.62192608621403e-37!GO:0009058;biosynthetic process;1.10263233424521e-36!GO:0010467;gene expression;1.788643951888e-36!GO:0046907;intracellular transport;4.49294709756159e-36!GO:0008380;RNA splicing;2.40301822352289e-35!GO:0044429;mitochondrial part;3.04855816748218e-35!GO:0031967;organelle envelope;4.85747371568348e-35!GO:0031975;envelope;6.89597926877449e-35!GO:0009059;macromolecule biosynthetic process;9.79379063053137e-35!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;2.32895504338465e-33!GO:0044249;cellular biosynthetic process;5.57678816689714e-33!GO:0006397;mRNA processing;3.52760572610947e-32!GO:0006886;intracellular protein transport;1.02515329314606e-31!GO:0033279;ribosomal subunit;1.31205043124076e-31!GO:0006996;organelle organization and biogenesis;2.68655518975204e-29!GO:0022613;ribonucleoprotein complex biogenesis and assembly;7.95418593964126e-29!GO:0065003;macromolecular complex assembly;9.72846858922409e-29!GO:0012505;endomembrane system;3.97131533978802e-27!GO:0043228;non-membrane-bound organelle;4.1986153200691e-27!GO:0043232;intracellular non-membrane-bound organelle;4.1986153200691e-27!GO:0005681;spliceosome;1.51593503679652e-25!GO:0022607;cellular component assembly;4.50571818605581e-25!GO:0005654;nucleoplasm;1.80358058256975e-24!GO:0051649;establishment of cellular localization;3.16568667966545e-24!GO:0051641;cellular localization;5.17333511062097e-24!GO:0005830;cytosolic ribosome (sensu Eukaryota);6.90641977204517e-23!GO:0005783;endoplasmic reticulum;3.73204815109942e-22!GO:0005740;mitochondrial envelope;1.25828572629458e-21!GO:0019866;organelle inner membrane;1.17250467232906e-20!GO:0044451;nucleoplasm part;1.31610186566661e-20!GO:0016462;pyrophosphatase activity;2.1780481821882e-20!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;3.40621967302573e-20!GO:0044432;endoplasmic reticulum part;3.4628609143607e-20!GO:0016817;hydrolase activity, acting on acid anhydrides;5.03315980069498e-20!GO:0031966;mitochondrial membrane;5.03315980069498e-20!GO:0006457;protein folding;5.47673168854091e-20!GO:0017111;nucleoside-triphosphatase activity;7.30154116739776e-20!GO:0006259;DNA metabolic process;9.06187078441088e-20!GO:0000166;nucleotide binding;1.37791124463581e-19!GO:0006119;oxidative phosphorylation;3.28714496087622e-19!GO:0005743;mitochondrial inner membrane;3.38973235729865e-19!GO:0044445;cytosolic part;6.15339116273378e-19!GO:0016874;ligase activity;1.66080322123048e-18!GO:0008134;transcription factor binding;1.94004039700142e-18!GO:0005794;Golgi apparatus;2.92959310788269e-18!GO:0003676;nucleic acid binding;4.75471715501354e-18!GO:0005730;nucleolus;4.84952602255591e-18!GO:0044265;cellular macromolecule catabolic process;7.53725405870091e-18!GO:0022618;protein-RNA complex assembly;1.0943768787235e-17!GO:0007049;cell cycle;3.72089902849429e-17!GO:0051603;proteolysis involved in cellular protein catabolic process;8.95314799384398e-17!GO:0015934;large ribosomal subunit;1.33505878328838e-16!GO:0043285;biopolymer catabolic process;1.51777597623112e-16!GO:0000502;proteasome complex (sensu Eukaryota);1.51777597623112e-16!GO:0016070;RNA metabolic process;1.61910663576108e-16!GO:0019941;modification-dependent protein catabolic process;1.95332113644266e-16!GO:0043632;modification-dependent macromolecule catabolic process;1.95332113644266e-16!GO:0006512;ubiquitin cycle;2.18676408018891e-16!GO:0044455;mitochondrial membrane part;2.23525165724018e-16!GO:0006511;ubiquitin-dependent protein catabolic process;2.37216472226938e-16!GO:0044257;cellular protein catabolic process;2.86294251999432e-16!GO:0015935;small ribosomal subunit;4.47936465011812e-16!GO:0009057;macromolecule catabolic process;4.87290794274781e-16!GO:0048193;Golgi vesicle transport;4.87290794274781e-16!GO:0031980;mitochondrial lumen;8.55511438779151e-16!GO:0005759;mitochondrial matrix;8.55511438779151e-16!GO:0048770;pigment granule;1.27118684221396e-15!GO:0042470;melanosome;1.27118684221396e-15!GO:0030163;protein catabolic process;1.76014814332595e-15!GO:0006605;protein targeting;2.13967027220343e-15!GO:0016192;vesicle-mediated transport;5.03051414177079e-15!GO:0042175;nuclear envelope-endoplasmic reticulum network;6.07339821997659e-15!GO:0005789;endoplasmic reticulum membrane;2.38814820960458e-14!GO:0005746;mitochondrial respiratory chain;2.63892049015053e-14!GO:0044248;cellular catabolic process;4.26603548224381e-14!GO:0051082;unfolded protein binding;7.28611064056492e-14!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;8.35127911750158e-14!GO:0017076;purine nucleotide binding;9.82390471509632e-14!GO:0005635;nuclear envelope;1.12667822192974e-13!GO:0032553;ribonucleotide binding;1.19852132425338e-13!GO:0032555;purine ribonucleotide binding;1.19852132425338e-13!GO:0051186;cofactor metabolic process;1.24043057078401e-13!GO:0000398;nuclear mRNA splicing, via spliceosome;2.49092728616278e-13!GO:0000375;RNA splicing, via transesterification reactions;2.49092728616278e-13!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;2.49092728616278e-13!GO:0031965;nuclear membrane;5.14753320958727e-13!GO:0005761;mitochondrial ribosome;6.68078953797124e-13!GO:0000313;organellar ribosome;6.68078953797124e-13!GO:0043412;biopolymer modification;8.40359435282367e-13!GO:0042254;ribosome biogenesis and assembly;8.66359399043927e-13!GO:0006913;nucleocytoplasmic transport;9.07014395500172e-13!GO:0008135;translation factor activity, nucleic acid binding;9.64069599130173e-13!GO:0050136;NADH dehydrogenase (quinone) activity;1.24484070951247e-12!GO:0003954;NADH dehydrogenase activity;1.24484070951247e-12!GO:0008137;NADH dehydrogenase (ubiquinone) activity;1.24484070951247e-12!GO:0051169;nuclear transport;1.98276152149039e-12!GO:0006974;response to DNA damage stimulus;2.26795869969737e-12!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);5.12194014272992e-12!GO:0016604;nuclear body;5.69710711542241e-12!GO:0022402;cell cycle process;6.05557520774461e-12!GO:0006732;coenzyme metabolic process;1.06190280322296e-11!GO:0003712;transcription cofactor activity;1.53228569683242e-11!GO:0012501;programmed cell death;1.66675975146483e-11!GO:0006464;protein modification process;2.2088049382631e-11!GO:0005793;ER-Golgi intermediate compartment;2.25426078242928e-11!GO:0044453;nuclear membrane part;2.48567400590889e-11!GO:0006915;apoptosis;2.58121447240287e-11!GO:0005524;ATP binding;3.57195871559014e-11!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);4.37655572200879e-11!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;5.04707184040619e-11!GO:0042775;organelle ATP synthesis coupled electron transport;5.07902328442043e-11!GO:0042773;ATP synthesis coupled electron transport;5.07902328442043e-11!GO:0032559;adenyl ribonucleotide binding;7.58869435222461e-11!GO:0004386;helicase activity;7.63454125797608e-11!GO:0030554;adenyl nucleotide binding;7.68860321822142e-11!GO:0030964;NADH dehydrogenase complex (quinone);8.38531600072139e-11!GO:0045271;respiratory chain complex I;8.38531600072139e-11!GO:0005747;mitochondrial respiratory chain complex I;8.38531600072139e-11!GO:0016887;ATPase activity;1.54369735840112e-10!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;1.64495248124847e-10!GO:0008639;small protein conjugating enzyme activity;1.68100133194147e-10!GO:0000278;mitotic cell cycle;1.83841737793938e-10!GO:0008219;cell death;2.3325162430201e-10!GO:0016265;death;2.3325162430201e-10!GO:0016879;ligase activity, forming carbon-nitrogen bonds;2.41473382217222e-10!GO:0006281;DNA repair;2.80513365135182e-10!GO:0004842;ubiquitin-protein ligase activity;2.91964437138736e-10!GO:0006446;regulation of translational initiation;3.03545437022951e-10!GO:0006413;translational initiation;5.3128257680654e-10!GO:0008026;ATP-dependent helicase activity;6.23615865728431e-10!GO:0003743;translation initiation factor activity;6.23615865728431e-10!GO:0019787;small conjugating protein ligase activity;6.74157108392817e-10!GO:0042623;ATPase activity, coupled;6.74157108392817e-10!GO:0006461;protein complex assembly;8.07914843493701e-10!GO:0016607;nuclear speck;9.12622106391701e-10!GO:0006399;tRNA metabolic process;9.86431336445144e-10!GO:0016881;acid-amino acid ligase activity;1.36677809541393e-09!GO:0017038;protein import;1.43924136326323e-09!GO:0009055;electron carrier activity;1.48508253958298e-09!GO:0006366;transcription from RNA polymerase II promoter;1.68418423612491e-09!GO:0005643;nuclear pore;2.71678750936569e-09!GO:0009056;catabolic process;4.21946955364101e-09!GO:0005768;endosome;4.38214983513378e-09!GO:0043687;post-translational protein modification;4.46258339270034e-09!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;6.07338125362628e-09!GO:0006888;ER to Golgi vesicle-mediated transport;6.33978214783339e-09!GO:0006403;RNA localization;9.40063253627892e-09!GO:0044431;Golgi apparatus part;9.6548837886592e-09!GO:0050657;nucleic acid transport;1.12461745351721e-08!GO:0051236;establishment of RNA localization;1.12461745351721e-08!GO:0050658;RNA transport;1.12461745351721e-08!GO:0008565;protein transporter activity;1.20456570546934e-08!GO:0051276;chromosome organization and biogenesis;1.21230068452848e-08!GO:0009259;ribonucleotide metabolic process;1.29186583176879e-08!GO:0009719;response to endogenous stimulus;2.11056050345003e-08!GO:0006260;DNA replication;2.25557715652758e-08!GO:0043038;amino acid activation;2.66537675376225e-08!GO:0006418;tRNA aminoacylation for protein translation;2.66537675376225e-08!GO:0043039;tRNA aminoacylation;2.66537675376225e-08!GO:0006163;purine nucleotide metabolic process;2.66709273021933e-08!GO:0051246;regulation of protein metabolic process;2.99469053450592e-08!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;2.99469053450592e-08!GO:0004812;aminoacyl-tRNA ligase activity;2.99469053450592e-08!GO:0016875;ligase activity, forming carbon-oxygen bonds;2.99469053450592e-08!GO:0065002;intracellular protein transport across a membrane;3.07035943999172e-08!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;3.44190936474309e-08!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;3.49180804585155e-08!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;3.57419693522278e-08!GO:0009060;aerobic respiration;4.18830304613669e-08!GO:0051188;cofactor biosynthetic process;5.40989299084553e-08!GO:0006164;purine nucleotide biosynthetic process;5.43254426489093e-08!GO:0022403;cell cycle phase;5.44777638977507e-08!GO:0009150;purine ribonucleotide metabolic process;6.64499085772653e-08!GO:0005788;endoplasmic reticulum lumen;6.75034058630917e-08!GO:0006364;rRNA processing;7.23475669979583e-08!GO:0016072;rRNA metabolic process;7.48592185064263e-08!GO:0005839;proteasome core complex (sensu Eukaryota);8.42835680620567e-08!GO:0009260;ribonucleotide biosynthetic process;8.84720182198979e-08!GO:0043067;regulation of programmed cell death;9.76694867679866e-08!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.13054453692312e-07!GO:0042981;regulation of apoptosis;1.16900646866103e-07!GO:0000087;M phase of mitotic cell cycle;1.19264161185232e-07!GO:0030120;vesicle coat;1.30193442447745e-07!GO:0030662;coated vesicle membrane;1.30193442447745e-07!GO:0003924;GTPase activity;1.30326335277463e-07!GO:0015986;ATP synthesis coupled proton transport;1.31818112382739e-07!GO:0015985;energy coupled proton transport, down electrochemical gradient;1.31818112382739e-07!GO:0009152;purine ribonucleotide biosynthetic process;1.33774977245743e-07!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;1.39008078826054e-07!GO:0045333;cellular respiration;1.50272802899238e-07!GO:0030532;small nuclear ribonucleoprotein complex;1.55651034847748e-07!GO:0051726;regulation of cell cycle;1.66278805371974e-07!GO:0000074;regulation of progression through cell cycle;1.85470295698941e-07!GO:0050794;regulation of cellular process;1.89392205580758e-07!GO:0005694;chromosome;1.93048877684202e-07!GO:0007067;mitosis;2.00739680146307e-07!GO:0007249;I-kappaB kinase/NF-kappaB cascade;2.08548804709461e-07!GO:0051170;nuclear import;2.52156655159008e-07!GO:0016787;hydrolase activity;2.90187473767302e-07!GO:0046930;pore complex;3.12291548022601e-07!GO:0051301;cell division;3.54135336525898e-07!GO:0005773;vacuole;4.09829912039597e-07!GO:0006325;establishment and/or maintenance of chromatin architecture;4.55963765678224e-07!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;4.77841333061905e-07!GO:0044440;endosomal part;5.5296932251771e-07!GO:0010008;endosome membrane;5.5296932251771e-07!GO:0048523;negative regulation of cellular process;5.91291437407626e-07!GO:0004298;threonine endopeptidase activity;6.0863102364707e-07!GO:0048475;coated membrane;6.10049557828497e-07!GO:0030117;membrane coat;6.10049557828497e-07!GO:0006606;protein import into nucleus;6.48930708721576e-07!GO:0009108;coenzyme biosynthetic process;6.81043897938916e-07!GO:0051028;mRNA transport;6.88024621102696e-07!GO:0009117;nucleotide metabolic process;8.46874008820148e-07!GO:0000245;spliceosome assembly;8.65178688312178e-07!GO:0009142;nucleoside triphosphate biosynthetic process;9.09521431280749e-07!GO:0009201;ribonucleoside triphosphate biosynthetic process;9.09521431280749e-07!GO:0019829;cation-transporting ATPase activity;9.09521431280749e-07!GO:0032446;protein modification by small protein conjugation;9.18285025472702e-07!GO:0009141;nucleoside triphosphate metabolic process;9.24970790688805e-07!GO:0000139;Golgi membrane;9.27155750824988e-07!GO:0043566;structure-specific DNA binding;9.92647495816096e-07!GO:0009199;ribonucleoside triphosphate metabolic process;1.11328446479798e-06!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;1.13170407611628e-06!GO:0009145;purine nucleoside triphosphate biosynthetic process;1.13170407611628e-06!GO:0016567;protein ubiquitination;1.20166803333008e-06!GO:0006323;DNA packaging;1.23618332203316e-06!GO:0009205;purine ribonucleoside triphosphate metabolic process;1.39307609772715e-06!GO:0009144;purine nucleoside triphosphate metabolic process;1.39307609772715e-06!GO:0043069;negative regulation of programmed cell death;1.61738703423573e-06!GO:0007005;mitochondrion organization and biogenesis;1.67529160441989e-06!GO:0006754;ATP biosynthetic process;1.93274416233038e-06!GO:0006753;nucleoside phosphate metabolic process;1.93274416233038e-06!GO:0000323;lytic vacuole;1.93464826133938e-06!GO:0005764;lysosome;1.93464826133938e-06!GO:0031988;membrane-bound vesicle;1.937913050025e-06!GO:0006099;tricarboxylic acid cycle;2.13630122498812e-06!GO:0046356;acetyl-CoA catabolic process;2.13630122498812e-06!GO:0003724;RNA helicase activity;2.18964123207792e-06!GO:0031982;vesicle;2.31611023659819e-06!GO:0015078;hydrogen ion transmembrane transporter activity;2.35381084425674e-06!GO:0016740;transferase activity;2.39022308970124e-06!GO:0031202;RNA splicing factor activity, transesterification mechanism;2.45561212697846e-06!GO:0016023;cytoplasmic membrane-bound vesicle;2.45963912117585e-06!GO:0000279;M phase;3.04806667565501e-06!GO:0031410;cytoplasmic vesicle;3.20290184615908e-06!GO:0044427;chromosomal part;3.21998881714742e-06!GO:0046034;ATP metabolic process;3.28057850642654e-06!GO:0005770;late endosome;3.37004390221397e-06!GO:0005798;Golgi-associated vesicle;3.69347311464274e-06!GO:0043066;negative regulation of apoptosis;3.98450516749101e-06!GO:0043623;cellular protein complex assembly;4.59452928985959e-06!GO:0006613;cotranslational protein targeting to membrane;4.62944408432672e-06!GO:0006916;anti-apoptosis;5.52388945281116e-06!GO:0006084;acetyl-CoA metabolic process;5.65602615971811e-06!GO:0051789;response to protein stimulus;5.7046529974634e-06!GO:0006986;response to unfolded protein;5.7046529974634e-06!GO:0016779;nucleotidyltransferase activity;6.86012761015138e-06!GO:0003714;transcription corepressor activity;7.69799380977866e-06!GO:0016853;isomerase activity;8.84044499223768e-06!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;9.24168794355401e-06!GO:0016469;proton-transporting two-sector ATPase complex;9.89087242203939e-06!GO:0048519;negative regulation of biological process;1.04641174170323e-05!GO:0003713;transcription coactivator activity;1.0964275595366e-05!GO:0003697;single-stranded DNA binding;1.1085312225766e-05!GO:0045259;proton-transporting ATP synthase complex;1.15221882471553e-05!GO:0016859;cis-trans isomerase activity;1.35845719764875e-05!GO:0015630;microtubule cytoskeleton;1.35845719764875e-05!GO:0016563;transcription activator activity;1.59792608456975e-05!GO:0016568;chromatin modification;1.91353585917359e-05!GO:0007243;protein kinase cascade;2.41280581068384e-05!GO:0005525;GTP binding;2.41280581068384e-05!GO:0031324;negative regulation of cellular metabolic process;2.65152297210768e-05!GO:0016564;transcription repressor activity;2.69419623377469e-05!GO:0000151;ubiquitin ligase complex;2.82061283381373e-05!GO:0016491;oxidoreductase activity;3.36781233539546e-05!GO:0009109;coenzyme catabolic process;3.438409629304e-05!GO:0030867;rough endoplasmic reticulum membrane;3.51288697513531e-05!GO:0065004;protein-DNA complex assembly;3.75171028644005e-05!GO:0006752;group transfer coenzyme metabolic process;4.13947309302458e-05!GO:0043021;ribonucleoprotein binding;4.46227960168974e-05!GO:0005667;transcription factor complex;4.73955880548738e-05!GO:0051187;cofactor catabolic process;5.90616287918891e-05!GO:0009892;negative regulation of metabolic process;6.42508650757666e-05!GO:0006793;phosphorus metabolic process;6.57962606852995e-05!GO:0006796;phosphate metabolic process;6.57962606852995e-05!GO:0008186;RNA-dependent ATPase activity;6.86812028789161e-05!GO:0045454;cell redox homeostasis;7.4895642417004e-05!GO:0008654;phospholipid biosynthetic process;8.07469595184709e-05!GO:0030133;transport vesicle;8.74054562824222e-05!GO:0031252;leading edge;0.000103658552930883!GO:0019899;enzyme binding;0.000110467076591087!GO:0051168;nuclear export;0.000110674723164973!GO:0051427;hormone receptor binding;0.000116585678133029!GO:0048471;perinuclear region of cytoplasm;0.000117314281449616!GO:0005813;centrosome;0.000123216220375613!GO:0005762;mitochondrial large ribosomal subunit;0.000128442691656527!GO:0000315;organellar large ribosomal subunit;0.000128442691656527!GO:0005791;rough endoplasmic reticulum;0.000142798481218873!GO:0050789;regulation of biological process;0.000146277009848318!GO:0006357;regulation of transcription from RNA polymerase II promoter;0.000151162129343753!GO:0007010;cytoskeleton organization and biogenesis;0.000151162129343753!GO:0006612;protein targeting to membrane;0.000155664109369803!GO:0003899;DNA-directed RNA polymerase activity;0.00015906253248011!GO:0033116;ER-Golgi intermediate compartment membrane;0.000175803477948944!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.000175803477948944!GO:0008250;oligosaccharyl transferase complex;0.000196920677683312!GO:0004004;ATP-dependent RNA helicase activity;0.000203883650558668!GO:0030036;actin cytoskeleton organization and biogenesis;0.000204040932386732!GO:0035257;nuclear hormone receptor binding;0.000231785826129183!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.000234675937747088!GO:0032561;guanyl ribonucleotide binding;0.000275337306801123!GO:0019001;guanyl nucleotide binding;0.000275337306801123!GO:0003690;double-stranded DNA binding;0.000283432781370143!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.000283591833840309!GO:0006891;intra-Golgi vesicle-mediated transport;0.000300036572041395!GO:0005048;signal sequence binding;0.000301417793283891!GO:0016363;nuclear matrix;0.000306529818067445!GO:0005815;microtubule organizing center;0.000317783933753892!GO:0006333;chromatin assembly or disassembly;0.000334831420928401!GO:0016126;sterol biosynthetic process;0.000353968949853346!GO:0000314;organellar small ribosomal subunit;0.000363493886705781!GO:0005763;mitochondrial small ribosomal subunit;0.000363493886705781!GO:0006091;generation of precursor metabolites and energy;0.000378515548029178!GO:0030176;integral to endoplasmic reticulum membrane;0.000396467330557533!GO:0005769;early endosome;0.000411251033583242!GO:0004576;oligosaccharyl transferase activity;0.000453717261331214!GO:0016310;phosphorylation;0.000488656041683895!GO:0008361;regulation of cell size;0.000490350338157077!GO:0005885;Arp2/3 protein complex;0.000504555389033497!GO:0009967;positive regulation of signal transduction;0.000534838114526211!GO:0001558;regulation of cell growth;0.000570005389348059!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0006440682841407!GO:0031072;heat shock protein binding;0.000711430890331795!GO:0000785;chromatin;0.000713085951465257!GO:0019222;regulation of metabolic process;0.000736098019569202!GO:0046489;phosphoinositide biosynthetic process;0.00078978093809291!GO:0009165;nucleotide biosynthetic process;0.000799025512959717!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.000852209590606589!GO:0008092;cytoskeletal protein binding;0.00087127011400019!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.000926094034447486!GO:0016049;cell growth;0.000930507049078573!GO:0006695;cholesterol biosynthetic process;0.000972925592122893!GO:0015980;energy derivation by oxidation of organic compounds;0.00102348069545847!GO:0051252;regulation of RNA metabolic process;0.00103250360206412!GO:0006402;mRNA catabolic process;0.00104427217927841!GO:0048522;positive regulation of cellular process;0.00109368497006726!GO:0030134;ER to Golgi transport vesicle;0.0010960194208205!GO:0030127;COPII vesicle coat;0.00112827958959961!GO:0012507;ER to Golgi transport vesicle membrane;0.00112827958959961!GO:0016044;membrane organization and biogenesis;0.00113355772115929!GO:0005905;coated pit;0.00113863317391649!GO:0045045;secretory pathway;0.00114385229318015!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00118396903245056!GO:0042802;identical protein binding;0.00119931929021384!GO:0000075;cell cycle checkpoint;0.0012159730429501!GO:0018196;peptidyl-asparagine modification;0.00123383392639472!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.00123383392639472!GO:0007264;small GTPase mediated signal transduction;0.00123545509057294!GO:0051329;interphase of mitotic cell cycle;0.00131195875680199!GO:0006261;DNA-dependent DNA replication;0.00131664289567087!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.0013339035282997!GO:0048500;signal recognition particle;0.0013339035282997!GO:0045786;negative regulation of progression through cell cycle;0.00139487576040842!GO:0046483;heterocycle metabolic process;0.00148478929267395!GO:0030029;actin filament-based process;0.00148478929267395!GO:0006352;transcription initiation;0.00155339333735636!GO:0046474;glycerophospholipid biosynthetic process;0.00160873523831774!GO:0031902;late endosome membrane;0.00165824317612916!GO:0030663;COPI coated vesicle membrane;0.00174594340036039!GO:0030126;COPI vesicle coat;0.00174594340036039!GO:0008610;lipid biosynthetic process;0.00177268731217289!GO:0009112;nucleobase metabolic process;0.00181713901767188!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00186219016113829!GO:0006672;ceramide metabolic process;0.00203670580568089!GO:0006383;transcription from RNA polymerase III promoter;0.00204338147021485!GO:0043488;regulation of mRNA stability;0.00208038408647139!GO:0043487;regulation of RNA stability;0.00208038408647139!GO:0030658;transport vesicle membrane;0.00213764316049429!GO:0051325;interphase;0.00214946232278075!GO:0003729;mRNA binding;0.00236486014470026!GO:0050662;coenzyme binding;0.00254979776937904!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.00264932254998558!GO:0045047;protein targeting to ER;0.00264932254998558!GO:0016251;general RNA polymerase II transcription factor activity;0.00293378979197433!GO:0001726;ruffle;0.00302355254781198!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.00303607546716043!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.00303607546716043!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.00303607546716043!GO:0044452;nucleolar part;0.00310402040647324!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00313317644968156!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.00315151018925584!GO:0016862;intramolecular oxidoreductase activity, interconverting keto- and enol-groups;0.0031630322610391!GO:0051059;NF-kappaB binding;0.00318066642228751!GO:0006414;translational elongation;0.00318176875045522!GO:0016197;endosome transport;0.00325093318752528!GO:0046519;sphingoid metabolic process;0.00347824284859857!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.00359719360434846!GO:0046467;membrane lipid biosynthetic process;0.00359719360434846!GO:0032940;secretion by cell;0.00365521448437159!GO:0005819;spindle;0.00373358766211798!GO:0016481;negative regulation of transcription;0.00373905376736744!GO:0043681;protein import into mitochondrion;0.00381185248709112!GO:0005838;proteasome regulatory particle (sensu Eukaryota);0.00388011634297217!GO:0008312;7S RNA binding;0.00398975558667727!GO:0008033;tRNA processing;0.00398975558667727!GO:0000059;protein import into nucleus, docking;0.00403388566760974!GO:0051235;maintenance of localization;0.00404745219559192!GO:0030384;phosphoinositide metabolic process;0.00411080224723037!GO:0000079;regulation of cyclin-dependent protein kinase activity;0.00416907115487586!GO:0065009;regulation of a molecular function;0.00428287975339548!GO:0030880;RNA polymerase complex;0.0043463299636773!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00438244801995576!GO:0030137;COPI-coated vesicle;0.00438244801995576!GO:0006401;RNA catabolic process;0.00454811440494814!GO:0043161;proteasomal ubiquitin-dependent protein catabolic process;0.00464682870425167!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.00471911104316011!GO:0051920;peroxiredoxin activity;0.00483804303036358!GO:0006497;protein amino acid lipidation;0.00490827220611357!GO:0005684;U2-dependent spliceosome;0.00494087500362275!GO:0031968;organelle outer membrane;0.00494087500362275!GO:0033673;negative regulation of kinase activity;0.00500533241822577!GO:0006469;negative regulation of protein kinase activity;0.00500533241822577!GO:0030660;Golgi-associated vesicle membrane;0.00519353822517696!GO:0006950;response to stress;0.00536891277349643!GO:0019867;outer membrane;0.00541090401831712!GO:0006302;double-strand break repair;0.00553681882474365!GO:0051128;regulation of cellular component organization and biogenesis;0.00589314995743741!GO:0044262;cellular carbohydrate metabolic process;0.00594693653073516!GO:0006818;hydrogen transport;0.00638136723438228!GO:0009116;nucleoside metabolic process;0.00646951601739068!GO:0007051;spindle organization and biogenesis;0.00655666779669627!GO:0006506;GPI anchor biosynthetic process;0.00656250873641738!GO:0019752;carboxylic acid metabolic process;0.00656577067081661!GO:0006769;nicotinamide metabolic process;0.00669690617703882!GO:0015992;proton transport;0.00691763921790913!GO:0007088;regulation of mitosis;0.00699065073205591!GO:0045893;positive regulation of transcription, DNA-dependent;0.00716339056167159!GO:0048487;beta-tubulin binding;0.00719634498261126!GO:0003678;DNA helicase activity;0.00724981306855679!GO:0030659;cytoplasmic vesicle membrane;0.00747810995475906!GO:0031625;ubiquitin protein ligase binding;0.00761764856240123!GO:0055029;nuclear DNA-directed RNA polymerase complex;0.00773589910787823!GO:0000428;DNA-directed RNA polymerase complex;0.00773589910787823!GO:0003746;translation elongation factor activity;0.00793079391179654!GO:0008180;signalosome;0.00793079391179654!GO:0008139;nuclear localization sequence binding;0.0080126229686173!GO:0019843;rRNA binding;0.00815216293695461!GO:0005657;replication fork;0.00815216293695461!GO:0006650;glycerophospholipid metabolic process;0.00818859278617736!GO:0051348;negative regulation of transferase activity;0.00821279162928756!GO:0051052;regulation of DNA metabolic process;0.00831697432636634!GO:0003923;GPI-anchor transamidase activity;0.00854617465306455!GO:0016255;attachment of GPI anchor to protein;0.00854617465306455!GO:0042765;GPI-anchor transamidase complex;0.00854617465306455!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.00864665159160073!GO:0015399;primary active transmembrane transporter activity;0.00864665159160073!GO:0006082;organic acid metabolic process;0.00873580277544099!GO:0030132;clathrin coat of coated pit;0.00905291591006597!GO:0006509;membrane protein ectodomain proteolysis;0.00909527693478557!GO:0033619;membrane protein proteolysis;0.00909527693478557!GO:0051087;chaperone binding;0.00909527693478557!GO:0003711;transcription elongation regulator activity;0.00909527693478557!GO:0006417;regulation of translation;0.00911923917037779!GO:0006505;GPI anchor metabolic process;0.00953466857489098!GO:0016272;prefoldin complex;0.00965669843468107!GO:0006405;RNA export from nucleus;0.00986607719305037!GO:0006611;protein export from nucleus;0.0100304026879351!GO:0007040;lysosome organization and biogenesis;0.0101806999502516!GO:0042158;lipoprotein biosynthetic process;0.0102475102665865!GO:0000082;G1/S transition of mitotic cell cycle;0.0105032616748536!GO:0003756;protein disulfide isomerase activity;0.0107237293403147!GO:0016864;intramolecular oxidoreductase activity, transposing S-S bonds;0.0107237293403147!GO:0005832;chaperonin-containing T-complex;0.01106017072999!GO:0043022;ribosome binding;0.011163881528495!GO:0007093;mitotic cell cycle checkpoint;0.0111671420457319!GO:0006892;post-Golgi vesicle-mediated transport;0.0116422947117574!GO:0040008;regulation of growth;0.01169070886682!GO:0006740;NADPH regeneration;0.0117470649115652!GO:0006098;pentose-phosphate shunt;0.0117470649115652!GO:0006839;mitochondrial transport;0.011905898535154!GO:0046966;thyroid hormone receptor binding;0.0120076852148765!GO:0032200;telomere organization and biogenesis;0.012223892093259!GO:0000723;telomere maintenance;0.012223892093259!GO:0044433;cytoplasmic vesicle part;0.0124613365398404!GO:0030118;clathrin coat;0.0125034173140568!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0125286037773461!GO:0046822;regulation of nucleocytoplasmic transport;0.012546267730454!GO:0032507;maintenance of cellular protein localization;0.012546267730454!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0130636701361991!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0130636701361991!GO:0051287;NAD binding;0.013255126381035!GO:0012506;vesicle membrane;0.0132716835360043!GO:0003682;chromatin binding;0.014513714229794!GO:0005774;vacuolar membrane;0.0147384573070269!GO:0005862;muscle thin filament tropomyosin;0.0147920756991347!GO:0017166;vinculin binding;0.015249167505427!GO:0045792;negative regulation of cell size;0.015249167505427!GO:0000209;protein polyubiquitination;0.0154544495947481!GO:0006626;protein targeting to mitochondrion;0.0158100857290489!GO:0000226;microtubule cytoskeleton organization and biogenesis;0.0158100857290489!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.015932123698305!GO:0015002;heme-copper terminal oxidase activity;0.015932123698305!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.015932123698305!GO:0004129;cytochrome-c oxidase activity;0.015932123698305!GO:0030521;androgen receptor signaling pathway;0.0160292400556967!GO:0006334;nucleosome assembly;0.0163502293721131!GO:0006310;DNA recombination;0.0168558461340811!GO:0004674;protein serine/threonine kinase activity;0.0168692057797618!GO:0007033;vacuole organization and biogenesis;0.0168858058223236!GO:0005938;cell cortex;0.0179774215665395!GO:0016408;C-acyltransferase activity;0.0179808615485284!GO:0015631;tubulin binding;0.0181801900748063!GO:0004860;protein kinase inhibitor activity;0.0181801900748063!GO:0005874;microtubule;0.0182922520817058!GO:0016765;transferase activity, transferring alkyl or aryl (other than methyl) groups;0.0183417640156054!GO:0009119;ribonucleoside metabolic process;0.0186315875765822!GO:0045185;maintenance of protein localization;0.0192703899978474!GO:0022890;inorganic cation transmembrane transporter activity;0.0195453088938432!GO:0043065;positive regulation of apoptosis;0.0196680803737366!GO:0006767;water-soluble vitamin metabolic process;0.0197059910257192!GO:0030149;sphingolipid catabolic process;0.0197375817259277!GO:0007034;vacuolar transport;0.0197375817259277!GO:0030308;negative regulation of cell growth;0.0197957735767944!GO:0005741;mitochondrial outer membrane;0.0200683364816464!GO:0007050;cell cycle arrest;0.0203275766880916!GO:0000049;tRNA binding;0.0204661911315062!GO:0043624;cellular protein complex disassembly;0.020544874189561!GO:0006144;purine base metabolic process;0.0207447259143468!GO:0046983;protein dimerization activity;0.0209392720486747!GO:0000776;kinetochore;0.0209392720486747!GO:0006984;ER-nuclear signaling pathway;0.0210128618338041!GO:0005637;nuclear inner membrane;0.0213122363766262!GO:0031227;intrinsic to endoplasmic reticulum membrane;0.0214076290511232!GO:0022406;membrane docking;0.0215289299494653!GO:0048278;vesicle docking;0.0215289299494653!GO:0016860;intramolecular oxidoreductase activity;0.0215558373196981!GO:0008637;apoptotic mitochondrial changes;0.0216195732492138!GO:0043068;positive regulation of programmed cell death;0.0217337995182888!GO:0032906;transforming growth factor-beta2 production;0.0217501799223817!GO:0032909;regulation of transforming growth factor-beta2 production;0.0217501799223817!GO:0065007;biological regulation;0.0219125113193759!GO:0008097;5S rRNA binding;0.0223616534723159!GO:0031497;chromatin assembly;0.0224361957311944!GO:0006376;mRNA splice site selection;0.0227756935974499!GO:0000389;nuclear mRNA 3'-splice site recognition;0.0227756935974499!GO:0006607;NLS-bearing substrate import into nucleus;0.0234059526558422!GO:0031323;regulation of cellular metabolic process;0.0238417291360171!GO:0006733;oxidoreduction coenzyme metabolic process;0.0239569517589469!GO:0004527;exonuclease activity;0.024056486931226!GO:0006520;amino acid metabolic process;0.0242698610703347!GO:0016281;eukaryotic translation initiation factor 4F complex;0.0248475894794375!GO:0007030;Golgi organization and biogenesis;0.0248475894794375!GO:0008022;protein C-terminus binding;0.0249132670075263!GO:0031124;mRNA 3'-end processing;0.0251897438052717!GO:0051101;regulation of DNA binding;0.025367895592196!GO:0008047;enzyme activator activity;0.0255194364833781!GO:0003684;damaged DNA binding;0.0255194364833781!GO:0045936;negative regulation of phosphate metabolic process;0.0256616520684514!GO:0051098;regulation of binding;0.0259173112757422!GO:0008601;protein phosphatase type 2A regulator activity;0.0262535322088695!GO:0043492;ATPase activity, coupled to movement of substances;0.026609167211302!GO:0019362;pyridine nucleotide metabolic process;0.026609167211302!GO:0043433;negative regulation of transcription factor activity;0.0268688514954752!GO:0045941;positive regulation of transcription;0.027164228386973!GO:0005869;dynactin complex;0.0275342854049298!GO:0006739;NADP metabolic process;0.0275672090815769!GO:0051651;maintenance of cellular localization;0.027584977171103!GO:0050811;GABA receptor binding;0.0277702880040468!GO:0016615;malate dehydrogenase activity;0.0279137780268982!GO:0031326;regulation of cellular biosynthetic process;0.0279977248643904!GO:0006007;glucose catabolic process;0.0283926544463704!GO:0005669;transcription factor TFIID complex;0.0284219028397103!GO:0006904;vesicle docking during exocytosis;0.0289771296520579!GO:0035258;steroid hormone receptor binding;0.0289771296520579!GO:0048518;positive regulation of biological process;0.0291445845154481!GO:0006595;polyamine metabolic process;0.0298293545999103!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.0301660022320781!GO:0035267;NuA4 histone acetyltransferase complex;0.0304286590078599!GO:0006665;sphingolipid metabolic process;0.0305682363082726!GO:0005665;DNA-directed RNA polymerase II, core complex;0.0309645154958189!GO:0017134;fibroblast growth factor binding;0.0315719754800676!GO:0030119;AP-type membrane coat adaptor complex;0.0316131123527696!GO:0005765;lysosomal membrane;0.0320001537775711!GO:0031301;integral to organelle membrane;0.0320718703312537!GO:0009889;regulation of biosynthetic process;0.0326616418077573!GO:0043189;H4/H2A histone acetyltransferase complex;0.0327638170162935!GO:0016706;oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors;0.0328218828501019!GO:0008234;cysteine-type peptidase activity;0.0328786441669815!GO:0048819;regulation of hair follicle maturation;0.0331988120138837!GO:0051794;regulation of catagen;0.0331988120138837!GO:0051795;positive regulation of catagen;0.0331988120138837!GO:0048818;positive regulation of hair follicle maturation;0.0331988120138837!GO:0030027;lamellipodium;0.0332118609023092!GO:0006378;mRNA polyadenylation;0.0337064750469497!GO:0048037;cofactor binding;0.0337284633761744!GO:0032984;macromolecular complex disassembly;0.0337417134236935!GO:0007004;telomere maintenance via telomerase;0.0338305847456543!GO:0016407;acetyltransferase activity;0.0339839093713795!GO:0032508;DNA duplex unwinding;0.034089266321741!GO:0032392;DNA geometric change;0.034089266321741!GO:0044437;vacuolar part;0.0341779717443189!GO:0000288;mRNA catabolic process, deadenylation-dependent decay;0.0341779717443189!GO:0008538;proteasome activator activity;0.0343887136863031!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0351722655578677!GO:0003702;RNA polymerase II transcription factor activity;0.0353568166725183!GO:0000086;G2/M transition of mitotic cell cycle;0.0353774244861192!GO:0016125;sterol metabolic process;0.0363476817563479!GO:0043284;biopolymer biosynthetic process;0.0371235627140652!GO:0030224;monocyte differentiation;0.0374757983747781!GO:0051540;metal cluster binding;0.0375197744485758!GO:0051536;iron-sulfur cluster binding;0.0375197744485758!GO:0007052;mitotic spindle organization and biogenesis;0.0375197744485758!GO:0019377;glycolipid catabolic process;0.0375336425397816!GO:0008094;DNA-dependent ATPase activity;0.0378873235366713!GO:0048468;cell development;0.0379824132170957!GO:0030131;clathrin adaptor complex;0.0385331967876917!GO:0042326;negative regulation of phosphorylation;0.0385638196285686!GO:0001836;release of cytochrome c from mitochondria;0.0386127138858115!GO:0006360;transcription from RNA polymerase I promoter;0.0389302152878704!GO:0019318;hexose metabolic process;0.0390413061224106!GO:0006354;RNA elongation;0.0390413061224106!GO:0000339;RNA cap binding;0.0393808980749521!GO:0002474;antigen processing and presentation of peptide antigen via MHC class I;0.0394757923351024!GO:0006100;tricarboxylic acid cycle intermediate metabolic process;0.0402110906921652!GO:0009081;branched chain family amino acid metabolic process;0.0402814371033601!GO:0030125;clathrin vesicle coat;0.0405309071077412!GO:0030665;clathrin coated vesicle membrane;0.0405309071077412!GO:0046588;negative regulation of calcium-dependent cell-cell adhesion;0.0409384555995666!GO:0046586;regulation of calcium-dependent cell-cell adhesion;0.0409384555995666!GO:0007021;tubulin folding;0.0409778385095134!GO:0006118;electron transport;0.0419967431677256!GO:0005996;monosaccharide metabolic process;0.0426860157028435!GO:0016820;hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances;0.0427993769963741!GO:0000159;protein phosphatase type 2A complex;0.0429959612800134!GO:0047485;protein N-terminus binding;0.0431886243892993!GO:0030968;unfolded protein response;0.0433691362925995!GO:0003955;NAD(P)H dehydrogenase (quinone) activity;0.0436711209310068!GO:0005758;mitochondrial intermembrane space;0.0450033017599777!GO:0007162;negative regulation of cell adhesion;0.0451479053352042!GO:0006643;membrane lipid metabolic process;0.0462607506485818!GO:0022415;viral reproductive process;0.0468377812043747!GO:0016791;phosphoric monoester hydrolase activity;0.0468956720269503!GO:0005784;translocon complex;0.0469567399831897!GO:0030032;lamellipodium biogenesis;0.0472006615202732!GO:0000781;chromosome, telomeric region;0.0484837711111237!GO:0004003;ATP-dependent DNA helicase activity;0.0492793551104608!GO:0031970;organelle envelope lumen;0.0493057657762444!GO:0030433;ER-associated protein catabolic process;0.0494400507751546!GO:0006515;misfolded or incompletely synthesized protein catabolic process;0.0494400507751546!GO:0008475;procollagen-lysine 5-dioxygenase activity;0.049533353867581!GO:0030503;regulation of cell redox homeostasis;0.0498482141263689
 |sample_id=10415
 |sample_note=machine failed, remainder reloaded, low amount
@@ Line 76: / Line 98: @@
 |sample_tissue=gall bladder
 |top_motifs=ADNP_IRX_SIX_ZHX:1.56835707453;HSF1,2:1.51224439008;MYOD1:1.3607370381;STAT5{A,B}:1.3460824563;ZEB1:1.20343428067;STAT1,3:1.15024921235;EN1,2:1.08865793938;SNAI1..3:1.02879698673;VSX1,2:1.0124706281;HOXA9_MEIS1:0.994063600531;TBX4,5:0.975538402285;AHR_ARNT_ARNT2:0.930421614966;NKX2-1,4:0.863972999626;IKZF1:0.857017504489;bHLH_family:0.833890281516;ELK1,4_GABP{A,B1}:0.825468889533;NFE2L2:0.755037098744;SP1:0.753429539222;TEAD1:0.693140656191;POU1F1:0.618734635052;NKX3-1:0.612787496546;FOXA2:0.5640704702;NKX3-2:0.558780349252;PITX1..3:0.538072856954;LMO2:0.517819292811;BACH2:0.48081540563;RBPJ:0.46155442083;ZNF148:0.435693177907;NKX2-3_NKX2-5:0.435664700957;FOXN1:0.396863827503;PAX5:0.38618468581;HLF:0.378340330862;NFE2:0.369530620456;FOSL2:0.340060335885;FOS_FOS{B,L1}_JUN{B,D}:0.324877789422;XBP1:0.307217567325;SOX17:0.290876132676;LHX3,4:0.241357122324;HAND1,2:0.236503680454;HIF1A:0.234070727416;NFIX:0.222517071353;NFKB1_REL_RELA:0.20919477896;TLX1..3_NFIC{dimer}:0.206499631573;ATF4:0.205944455193;ELF1,2,4:0.199247856418;NRF1:0.185981001249;ARID5B:0.183884072205;PPARG:0.163008862975;XCPE1{core}:0.151347234426;ATF6:0.144942490175;HNF1A:0.14265882203;EP300:0.139479982653;CRX:0.137147435763;NFY{A,B,C}:0.129053368738;MYB:0.12126057524;SOX2:0.118656304885;LEF1_TCF7_TCF7L1,2:0.110513108377;ZNF143:0.109724922227;ZNF238:0.0970727032499;TFCP2:0.0927085218388;PAX8:0.0875411723559;NKX6-1,2:0.0697416625174;HMGA1,2:0.0589491455713;STAT2,4,6:0.0353615390625;ATF2:0.00787713653536;RFX1:-0.0043782062242;ATF5_CREB3:-0.00497804386774;ZFP161:-0.0135720010338;TEF:-0.0170998832088;TAL1_TCF{3,4,12}:-0.0193534448409;FOXQ1:-0.033104184894;HBP1_HMGB_SSRP1_UBTF:-0.0460228457054;IRF7:-0.0600454138976;ZBTB16:-0.0608320732144;ZBTB6:-0.0663444530265;PRDM1:-0.0724108586728;ALX4:-0.0750799835887;GFI1:-0.0769917275828;HES1:-0.0865374560748;MYBL2:-0.0882836318428;RFX2..5_RFXANK_RFXAP:-0.0905978558777;ONECUT1,2:-0.0961010163508;HOX{A5,B5}:-0.103878401385;MAZ:-0.105086805188;YY1:-0.121212957169;PAX2:-0.145764109254;E2F1..5:-0.146136172394;GATA6:-0.150618335319;GLI1..3:-0.152898292741;NANOG:-0.165562056216;MED-1{core}:-0.165820588385;JUN:-0.166707230239;EGR1..3:-0.17083973587;PATZ1:-0.173488181545;MZF1:-0.174317823963;POU5F1:-0.176229081675;PRRX1,2:-0.178783874466;DBP:-0.192828110697;GTF2I:-0.194405003402;TFDP1:-0.19548532943;POU3F1..4:-0.198626395293;FOX{D1,D2}:-0.19939998249;OCT4_SOX2{dimer}:-0.206164352935;TBP:-0.213989121136;IRF1,2:-0.215846021823;MEF2{A,B,C,D}:-0.220072565929;ZIC1..3:-0.233003044607;NFATC1..3:-0.242481648554;GTF2A1,2:-0.242608748109;PBX1:-0.251977289683;HNF4A_NR2F1,2:-0.270994885675;ZNF423:-0.273096713398;ETS1,2:-0.28418176651;RUNX1..3:-0.284551747763;FOXP1:-0.308313172338;TP53:-0.311249958442;FOX{I1,J2}:-0.34091600248;CDC5L:-0.358863426108;CUX2:-0.359037662567;SPIB:-0.382948064327;TFAP2B:-0.384304419943;AIRE:-0.38690640874;GCM1,2:-0.391331812935;SRF:-0.394462705796;RREB1:-0.401079638569;HIC1:-0.401773547034;PDX1:-0.419926361468;CREB1:-0.427175388314;GFI1B:-0.428828486919;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.435025579015;BPTF:-0.437632091733;GZF1:-0.437643256399;CEBPA,B_DDIT3:-0.444293894811;SPI1:-0.448029457121;MTF1:-0.45593812435;MTE{core}:-0.461993977118;ALX1:-0.473328224853;BREu{core}:-0.479066376926;SMAD1..7,9:-0.481304108845;SREBF1,2:-0.483974072353;FOXO1,3,4:-0.490667583732;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.499453643622;PAX4:-0.516566065407;NR1H4:-0.523527469054;NR5A1,2:-0.52831993065;POU2F1..3:-0.547844463961;TFAP2{A,C}:-0.571232412446;PAX3,7:-0.580094531494;FOXL1:-0.590686057311;ESRRA:-0.595666664916;POU6F1:-0.597558830757;EVI1:-0.599800128748;RXRA_VDR{dimer}:-0.608620665191;NR6A1:-0.620371141793;NR3C1:-0.62322988132;FOXD3:-0.647775132896;DMAP1_NCOR{1,2}_SMARC:-0.652008788385;SOX5:-0.657862578113;NHLH1,2:-0.6798677252;TLX2:-0.681826394314;SOX{8,9,10}:-0.684723808744;NFIL3:-0.688873092036;MYFfamily:-0.690838100286;AR:-0.696272529557;T:-0.706464951439;CDX1,2,4:-0.725453089467;REST:-0.728834882703;NFE2L1:-0.730002071887;UFEwm:-0.732570064644;EBF1:-0.741222320609;KLF4:-0.766836246738;MAFB:-0.785104568179;PAX1,9:-0.818880021919;TOPORS:-0.848753720761;TFAP4:-0.891438435229;FOXP3:-0.926146708475;PAX6:-0.946025168151;HOX{A6,A7,B6,B7}:-0.949290193616;SPZ1:-0.964943722557;FOXM1:-0.979292490356;GATA4:-1.00356797767;FOX{F1,F2,J1}:-1.01131479895;IKZF2:-1.08244292651;RORA:-1.09219453004;ESR1:-1.13577345095;HOX{A4,D4}:-1.17534568495;HMX1:-1.19281425573;NANOG{mouse}:-1.24379640929;RXR{A,B,G}:-1.30103223807;ZNF384:-1.36028731848;NKX2-2,8:-1.38762351787;TGIF1:-1.54083895633
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10415-106C1;search_select_hide=table117:FF:10415-106C1
 }}

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FF:10415-106C1: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 14:00, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0