FFCP PHASE1:Hg19::chr19:27733888..27733894,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:27733888..27733894,- | |||
|coexpression_cluster_id=C319 | |coexpression_cluster_id=C319 | ||
|description=CAGE_peak_at_chr19:27733888..27733894,- | |description=CAGE_peak_at_chr19:27733888..27733894,- | ||
|id=chr19:27733888..27733894,- | |id=chr19:27733888..27733894,- | ||
|ontology_enrichment_celltype=CL:0000453!8.73e-16!5;CL:0001014!8.15e-11!2;CL:0001016!8.15e-11!2;CL:0000990!8.52e-09!8;CL:0002032!1.50e-07!165;CL:0000837!1.50e-07!165;CL:0000451!3.37e-07!10;CL:0000037!4.59e-07!172;CL:0000566!4.59e-07!172;CL:0002031!6.92e-07!124 | |ontology_enrichment_celltype=CL:0000453!8.73e-16!5;CL:0001014!8.15e-11!2;CL:0001016!8.15e-11!2;CL:0000990!8.52e-09!8;CL:0002032!1.50e-07!165;CL:0000837!1.50e-07!165;CL:0000451!3.37e-07!10;CL:0000037!4.59e-07!172;CL:0000566!4.59e-07!172;CL:0002031!6.92e-07!124 | ||
|ontology_enrichment_celltype_v019=CL:0000453;1.93e-18;5!CL:0001014;2.90e-12;2!CL:0001016;2.90e-12;2!CL:0000990;1.07e-10;8!CL:0000451;6.35e-09;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000453,1.62e-18,5;CL:0001014,2.90e-12,2;CL:0001016,2.90e-12,2;CL:0000990,9.69e-11,8;CL:0000451,5.87e-09,10;CL:0000763,2.87e-07,108;CL:0000049,2.87e-07,108 | |||
|ontology_enrichment_development_v019=UBERON:0005425;1.49e-23;1!UBERON:0003056;9.31e-09;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0000941;1.49e-23;1!UBERON:0001785;1.49e-23;1!UBERON:0002464;1.49e-23;1!UBERON:0004904;1.49e-23;1!UBERON:0001021;1.49e-23;1!UBERON:0003714;1.75e-12;2!UBERON:0005162;1.75e-12;2!UBERON:0000122;1.75e-12;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,1.34e-23,1;UBERON:0001785,1.34e-23,1;UBERON:0002464,1.34e-23,1;UBERON:0004904,1.34e-23,1;UBERON:0001021,1.34e-23,1;UBERON:0003902,1.34e-23,1;UBERON:0005425,1.34e-23,1;UBERON:0003714,1.65e-12,2;UBERON:0005162,1.65e-12,2;UBERON:0000122,1.65e-12,2;UBERON:0001781,6.87e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.65939452896706,0,0,0,0.637812899895131,0,0.336985893439485,0,0.32145117339416,0,0,0,0,0,0,0,0.400395987036012,0.574752439954483,0,0.954053754535364,0,0,0,0,0,0,0,0,0,0.167186495390678,0,0,0,0.111410456885174,0,0.221533894583621,1.62482318259009,0,0,0,0,0,0.593146252648242,0.535081656179426,0,0.453237370790265,0,0,0.759059076058509,0,0,0,0,0.127986611154418,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.277064115484183,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0,0,0.269662616320329,0,0,0,0,0,0,0,0,0,0,0,0.343135620597051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03664057770386,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502257091432126,4.21667878966063,0,0,0,0,0,0,0.112085143993527,0,0,0,0,0,0,0,1.27587750330633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438519753291869,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382838137483752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,0.573645408816206,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.01268954180134,0,0,0,0,0,0,0,0,0,0,0,0.540911356951966,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.899895566206002,1.5476039091159,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.7537427795545,0.531459361253452,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.71077681036618,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.535701835878287,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,6.65939452896706,0,0,0,0.637812899895131,0,0.336985893439485,0,0.32145117339416,0,0,0,0,0,0,0,0.400395987036012,0.574752439954483,0,0.954053754535364,0,0,0,0,0,0,0,0,0,0.167186495390678,0,0,0,0.111410456885174,0,0.221533894583621,1.62482318259009,0,0,0,0,0,0.593146252648242,0.535081656179426,0,0.453237370790265,0,0,0.759059076058509,0,0,0,0,0.127986611154418,0,0.236777252044017,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.277064115484183,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0,0,0.269662616320329,0,0,0,0,0,0,0,0,0,0,0,0.343135620597051,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03664057770386,0.144119953416961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.502257091432126,4.21667878966063,0,0,0,0,0,0,0.112085143993527,0,0,0,0,0,0,0,1.27587750330633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438519753291869,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.382838137483752,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,0.573645408816206,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.01268954180134,0,0,0,0,0,0,0,0,0,0,0,0.540911356951966,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.899895566206002,1.5476039091159,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.573409195690071,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.7537427795545,0.531459361253452,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.71077681036618,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.535701835878287,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196308467114945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr19:27733888..27733894,- | |short_description=p@chr19:27733888..27733894,- | ||
}} | }} |
Latest revision as of 05:58, 26 July 2015
Short description: | p@chr19:27733888..27733894, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:27733888..27733894, - |
Coexpression cluster: | C319_CD14_Neural_Hepatocyte_Neurons_optic_heart_migratory |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Langerhans cell | 1.62e-18 | 5 |
CD1a-positive Langerhans cell | 2.90e-12 | 2 |
immature CD1a-positive Langerhans cell | 2.90e-12 | 2 |
conventional dendritic cell | 9.69e-11 | 8 |
dendritic cell | 5.87e-09 | 10 |
myeloid cell | 2.87e-07 | 108 |
common myeloid progenitor | 2.87e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 1.34e-23 | 1 |
cranial nerve | 1.34e-23 | 1 |
nerve trunk | 1.34e-23 | 1 |
nerve connecting eye with brain | 1.34e-23 | 1 |
nerve | 1.34e-23 | 1 |
retinal neural layer | 1.34e-23 | 1 |
presumptive neural retina | 1.34e-23 | 1 |
neural tissue | 1.65e-12 | 2 |
multi cell component structure | 1.65e-12 | 2 |
neuron projection bundle | 1.65e-12 | 2 |
layer of retina | 6.87e-07 | 4 |