FFCP PHASE1:Hg19::chr19:47113300..47113328,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr19:47113300..47113328,+
|short_description=p@chr19:47113300..47113328,+
|description=CAGE_peak_at_chr19:47113300..47113328,+
|association_with_transcript=NA
...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr19:47113300..47113328,+ | |||
|coexpression_cluster_id=C1456 | |||
|description=CAGE_peak_at_chr19:47113300..47113328,+ | |||
|id=chr19:47113300..47113328,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001869!4.82e-15!32;UBERON:0002020!6.88e-14!34;UBERON:0003528!6.88e-14!34;UBERON:0001893!2.73e-13!34;UBERON:0001017!4.73e-13!82;UBERON:0001049!4.85e-13!57;UBERON:0005068!4.85e-13!57;UBERON:0006241!4.85e-13!57;UBERON:0007135!4.85e-13!57;UBERON:0002619!7.95e-13!22;UBERON:0000956!9.34e-13!25;UBERON:0000203!9.34e-13!25;UBERON:0002791!9.50e-13!33;UBERON:0002616!1.46e-12!59;UBERON:0005743!1.77e-12!86;UBERON:0001950!8.47e-12!20;UBERON:0002780!1.48e-11!41;UBERON:0001890!1.48e-11!41;UBERON:0006240!1.48e-11!41;UBERON:0000955!3.32e-11!69;UBERON:0006238!3.32e-11!69;UBERON:0003080!1.22e-10!42;UBERON:0003075!5.11e-10!86;UBERON:0007284!5.11e-10!86;UBERON:0000119!9.88e-10!312;UBERON:0000483!1.35e-09!309;UBERON:0000073!3.41e-09!94;UBERON:0001016!3.41e-09!94;UBERON:0003056!6.18e-09!61;UBERON:0002346!7.88e-09!90;UBERON:0000025!2.36e-08!194;UBERON:0000477!3.12e-08!286;UBERON:0004111!1.05e-07!241;UBERON:0000033!2.42e-07!123;UBERON:0000153!5.28e-07!129;UBERON:0007811!5.28e-07!129;UBERON:0000475!7.46e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;4.78e-15;32!UBERON:0002619;3.02e-14;22!UBERON:0003528;4.32e-14;34!UBERON:0002020;4.32e-14;34!UBERON:0000956;7.86e-14;25!UBERON:0000203;7.86e-14;25!UBERON:0002791;9.96e-14;32!UBERON:0001950;4.10e-13;20!UBERON:0001893;4.27e-13;34!UBERON:0002780;2.39e-09;41!UBERON:0001890;2.39e-09;41!UBERON:0000073;3.39e-08;53!UBERON:0002616;3.39e-08;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001869,3.68e-16,32;UBERON:0003528,4.17e-15,34;UBERON:0002020,4.17e-15,34;UBERON:0001049,5.89e-15,56;UBERON:0005068,5.89e-15,56;UBERON:0006241,5.89e-15,56;UBERON:0007135,5.89e-15,56;UBERON:0000073,6.43e-15,53;UBERON:0002616,6.43e-15,53;UBERON:0002791,1.48e-14,32;UBERON:0001893,3.11e-14,34;UBERON:0002619,4.70e-14,22;UBERON:0001017,8.57e-14,81;UBERON:0000956,1.56e-13,25;UBERON:0000203,1.56e-13,25;UBERON:0001950,6.48e-13,20;UBERON:0002780,1.40e-12,41;UBERON:0001890,1.40e-12,41;UBERON:0003080,1.40e-12,41;UBERON:0006240,1.40e-12,41;UBERON:0000955,5.77e-12,68;UBERON:0006238,5.77e-12,68;UBERON:0003075,2.04e-11,82;UBERON:0007284,2.04e-11,82;UBERON:0001016,1.78e-10,89;UBERON:0000119,1.94e-10,309;UBERON:0000483,2.73e-10,306;UBERON:0000025,6.89e-10,192;UBERON:0002346,8.55e-10,86;UBERON:0010371,9.68e-10,104;UBERON:0003056,1.17e-09,61;UBERON:0010314,2.20e-09,132;UBERON:0004111,1.82e-08,240 | |||
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| ||
|short_description=p@chr19:47113300..47113328,+ | |||
}} | }} |
Latest revision as of 15:18, 27 July 2015
Short description: | p@chr19:47113300..47113328, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:47113300..47113328, + |
Coexpression cluster: | C1456_medial_amygdala_brain_hippocampus_occipital_putamen_parietal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cerebral hemisphere | 3.68e-16 | 32 |
brain grey matter | 4.17e-15 | 34 |
gray matter | 4.17e-15 | 34 |
neural tube | 5.89e-15 | 56 |
neural rod | 5.89e-15 | 56 |
future spinal cord | 5.89e-15 | 56 |
neural keel | 5.89e-15 | 56 |
regional part of nervous system | 6.43e-15 | 53 |
regional part of brain | 6.43e-15 | 53 |
regional part of telencephalon | 1.48e-14 | 32 |
telencephalon | 3.11e-14 | 34 |
regional part of cerebral cortex | 4.70e-14 | 22 |
central nervous system | 8.57e-14 | 81 |
cerebral cortex | 1.56e-13 | 25 |
pallium | 1.56e-13 | 25 |
neocortex | 6.48e-13 | 20 |
regional part of forebrain | 1.40e-12 | 41 |
forebrain | 1.40e-12 | 41 |
anterior neural tube | 1.40e-12 | 41 |
future forebrain | 1.40e-12 | 41 |
brain | 5.77e-12 | 68 |
future brain | 5.77e-12 | 68 |
neural plate | 2.04e-11 | 82 |
presumptive neural plate | 2.04e-11 | 82 |
nervous system | 1.78e-10 | 89 |
cell layer | 1.94e-10 | 309 |
epithelium | 2.73e-10 | 306 |
tube | 6.89e-10 | 192 |
neurectoderm | 8.55e-10 | 86 |
ecto-epithelium | 9.68e-10 | 104 |
pre-chordal neural plate | 1.17e-09 | 61 |
structure with developmental contribution from neural crest | 2.20e-09 | 132 |
anatomical conduit | 1.82e-08 | 240 |