FF:11566-120D9: Difference between revisions

Latest revision as of 18:09, 4 June 2020

Name:	Mast cell, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs12593
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	skin
dev stage	41 years old adult
sex	female
age	76
cell type	mast cell
cell line	NA
company	NA
collaboration	Sven Guhl (Charite Germany)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	BsMC-T
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-ethanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005069

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs12593		CAGE		DRX008333		DRR009205

Accession ID Hg19

Library id		BAM		CTSS
CNhs12593		DRZ000630		DRZ002015

Accession ID Hg38

Library id		BAM		CTSS
CNhs12593		DRZ011980		DRZ013365

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00005069

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10014.AGTTCC		sRNA-Seq		DRX037237		DRR041603

Accession ID Hg19

Library id		BAM		CTSS
SRhi10014.AGTTCC		DRZ007245

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0.899
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0119
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.0585
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.276
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0585
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0.676
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.198
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.0126
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.0271
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.128
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.413
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0.11
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0.635
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0.0585
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.41
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.463
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.151
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.0585
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0658
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.333
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0.11
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.239
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.0585
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.243
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.661
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.48
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	1.177
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.112
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.581
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.792
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.287
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.00905
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.972
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.56
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.541
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.0585
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.318
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.198
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.333
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0.303
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.303
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.0585
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12593

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0329
MA0003.1	MA0003.1	0.525
MA0004.1	MA0004.1	0.83
MA0006.1	MA0006.1	0.92
MA0007.1	MA0007.1	0.18
MA0009.1	MA0009.1	0.117
MA0014.1	MA0014.1	0.855
MA0017.1	MA0017.1	0.0376
MA0018.2	MA0018.2	2.05499e-10
MA0019.1	MA0019.1	0.282
MA0024.1	MA0024.1	0.629
MA0025.1	MA0025.1	7.46114e-4
MA0027.1	MA0027.1	0.939
MA0028.1	MA0028.1	0.109
MA0029.1	MA0029.1	0.0124
MA0030.1	MA0030.1	8.5122e-5
MA0031.1	MA0031.1	0.0328
MA0035.2	MA0035.2	1.87395e-7
MA0038.1	MA0038.1	0.00942
MA0039.2	MA0039.2	0.112
MA0040.1	MA0040.1	0.57
MA0041.1	MA0041.1	0.463
MA0042.1	MA0042.1	0.169
MA0043.1	MA0043.1	1.96753e-7
MA0046.1	MA0046.1	0.793
MA0047.2	MA0047.2	0.267
MA0048.1	MA0048.1	0.554
MA0050.1	MA0050.1	0.573
MA0051.1	MA0051.1	0.779
MA0052.1	MA0052.1	0.00813
MA0055.1	MA0055.1	0.46
MA0057.1	MA0057.1	0.191
MA0058.1	MA0058.1	0.98
MA0059.1	MA0059.1	0.0228
MA0060.1	MA0060.1	0.612
MA0061.1	MA0061.1	1.54939e-11
MA0062.2	MA0062.2	6.92424e-7
MA0065.2	MA0065.2	0.0502
MA0066.1	MA0066.1	0.197
MA0067.1	MA0067.1	5.94452e-8
MA0068.1	MA0068.1	4.79623e-4
MA0069.1	MA0069.1	0.886
MA0070.1	MA0070.1	0.424
MA0071.1	MA0071.1	0.417
MA0072.1	MA0072.1	0.495
MA0073.1	MA0073.1	0.377
MA0074.1	MA0074.1	0.682
MA0076.1	MA0076.1	0.0835
MA0077.1	MA0077.1	0.312
MA0078.1	MA0078.1	0.705
MA0079.2	MA0079.2	0.00663
MA0080.2	MA0080.2	3.08809e-12
MA0081.1	MA0081.1	3.82155e-4
MA0083.1	MA0083.1	0.658
MA0084.1	MA0084.1	0.518
MA0087.1	MA0087.1	0.76
MA0088.1	MA0088.1	0.0146
MA0090.1	MA0090.1	0.00248
MA0091.1	MA0091.1	0.424
MA0092.1	MA0092.1	0.377
MA0093.1	MA0093.1	0.823
MA0099.2	MA0099.2	1.65572e-5
MA0100.1	MA0100.1	0.36
MA0101.1	MA0101.1	8.97473e-13
MA0102.2	MA0102.2	0.247
MA0103.1	MA0103.1	0.0019
MA0104.2	MA0104.2	0.0598
MA0105.1	MA0105.1	1.9162e-4
MA0106.1	MA0106.1	0.0111
MA0107.1	MA0107.1	3.17301e-13
MA0108.2	MA0108.2	0.0524
MA0111.1	MA0111.1	0.378
MA0112.2	MA0112.2	0.153
MA0113.1	MA0113.1	0.0815
MA0114.1	MA0114.1	0.0279
MA0115.1	MA0115.1	0.832
MA0116.1	MA0116.1	0.0397
MA0117.1	MA0117.1	0.0219
MA0119.1	MA0119.1	0.0238
MA0122.1	MA0122.1	0.421
MA0124.1	MA0124.1	0.687
MA0125.1	MA0125.1	0.189
MA0131.1	MA0131.1	0.0626
MA0135.1	MA0135.1	0.284
MA0136.1	MA0136.1	2.63305e-12
MA0137.2	MA0137.2	0.0871
MA0138.2	MA0138.2	0.744
MA0139.1	MA0139.1	0.677
MA0140.1	MA0140.1	5.81731e-5
MA0141.1	MA0141.1	0.0549
MA0142.1	MA0142.1	0.127
MA0143.1	MA0143.1	0.731
MA0144.1	MA0144.1	0.243
MA0145.1	MA0145.1	0.768
MA0146.1	MA0146.1	0.184
MA0147.1	MA0147.1	0.00612
MA0148.1	MA0148.1	0.418
MA0149.1	MA0149.1	0.453
MA0150.1	MA0150.1	0.0981
MA0152.1	MA0152.1	0.106
MA0153.1	MA0153.1	0.244
MA0154.1	MA0154.1	0.913
MA0155.1	MA0155.1	0.98
MA0156.1	MA0156.1	4.17578e-6
MA0157.1	MA0157.1	0.672
MA0159.1	MA0159.1	0.256
MA0160.1	MA0160.1	0.425
MA0162.1	MA0162.1	0.0261
MA0163.1	MA0163.1	0.393
MA0164.1	MA0164.1	0.689
MA0258.1	MA0258.1	0.631
MA0259.1	MA0259.1	0.335

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs12593

Novel motif	Logo	P-value
1	1	0.0849
10	10	0.344
100	100	0.241
101	101	0.753
102	102	0.835
103	103	0.319
104	104	0.923
105	105	0.618
106	106	0.797
107	107	0.0173
108	108	0.108
109	109	0.855
11	11	0.299
110	110	0.146
111	111	0.144
112	112	0.92
113	113	0.65
114	114	0.0869
115	115	0.811
116	116	0.17
117	117	0.0829
118	118	0.3
119	119	0.0981
12	12	0.602
120	120	0.254
121	121	0.284
122	122	0.506
123	123	0.514
124	124	0.0565
125	125	0.273
126	126	0.637
127	127	0.601
128	128	0.749
129	129	0.0022
13	13	0.739
130	130	0.447
131	131	0.696
132	132	0.151
133	133	0.0599
134	134	0.426
135	135	0.683
136	136	0.0422
137	137	0.0396
138	138	0.287
139	139	0.67
14	14	0.805
140	140	0.182
141	141	0.175
142	142	0.0351
143	143	0.729
144	144	0.874
145	145	0.593
146	146	0.325
147	147	0.137
148	148	0.695
149	149	0.0896
15	15	0.474
150	150	0.939
151	151	0.393
152	152	0.101
153	153	0.665
154	154	0.709
155	155	0.204
156	156	0.705
157	157	0.512
158	158	0.507
159	159	0.289
16	16	0.199
160	160	0.0508
161	161	0.349
162	162	0.147
163	163	0.358
164	164	0.412
165	165	0.918
166	166	0.0362
167	167	0.328
168	168	0.179
169	169	0.352
17	17	0.411
18	18	0.144
19	19	0.306
2	2	0.106
20	20	0.43
21	21	0.559
22	22	0.931
23	23	0.842
24	24	0.647
25	25	0.855
26	26	0.303
27	27	0.248
28	28	0.626
29	29	0.427
3	3	0.317
30	30	0.477
31	31	0.34
32	32	0.00338
33	33	0.801
34	34	0.646
35	35	0.144
36	36	0.705
37	37	0.804
38	38	0.638
39	39	0.574
4	4	0.412
40	40	0.41
41	41	0.985
42	42	0.294
43	43	0.454
44	44	0.046
45	45	0.579
46	46	0.249
47	47	0.209
48	48	0.164
49	49	0.422
5	5	0.728
50	50	0.926
51	51	0.859
52	52	0.883
53	53	0.953
54	54	0.809
55	55	0.584
56	56	0.483
57	57	0.0871
58	58	0.79
59	59	0.666
6	6	0.78
60	60	0.818
61	61	0.56
62	62	0.749
63	63	0.246
64	64	0.356
65	65	0.339
66	66	0.766
67	67	0.229
68	68	0.521
69	69	0.164
7	7	0.769
70	70	0.383
71	71	0.389
72	72	0.416
73	73	0.402
74	74	0.00818
75	75	0.98
76	76	0.758
77	77	0.0512
78	78	0.449
79	79	0.294
8	8	0.0701
80	80	0.45
81	81	0.308
82	82	0.924
83	83	0.773
84	84	0.342
85	85	0.632
86	86	0.0642
87	87	0.332
88	88	0.446
89	89	0.0109
9	9	0.728
90	90	0.614
91	91	0.878
92	92	0.346
93	93	0.252
94	94	0.695
95	95	0.0629
96	96	0.301
97	97	0.717
98	98	0.414
99	99	1.14993e-4

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs12593

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0000261 mast cell- heparinase treated sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0000151 (secretory cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0002274 (histamine secreting cell)
0000219 (motile cell)
0000163 (endocrine cell)
0000457 (biogenic amine secreting cell)
0000738 (leukocyte)
0000255 (eukaryotic cell)
0000097 (mast cell)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000260 (mast cell sample)
0000261 (mast cell- heparinase treated sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004765,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405,UBERON:0003081,UBERON:0006603,UBERON:0003061
+|DRA_sample_Accession=CAGE@SAMD00005069
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000839,CL:0000548,CL:0000034,CL:0002032,CL:0000763,CL:0000151,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000766,CL:0002274,CL:0000219,CL:0000163,CL:0000004,CL:0000134,CL:0000457,CL:0000738,CL:0000255,CL:0002191,CL:0002031,CL:0000037,CL:0000566,CL:0000049,CL:0000557,CL:0000097,CL:0000837,CL:0000831,CL:0002028
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00005069
+|accession_numbers=CAGE;DRX008333;DRR009205;DRZ000630;DRZ002015;DRZ011980;DRZ013365
+|accession_numbers_RNASeq=sRNA-Seq;DRX037237;DRR041603;DRZ007245
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0000151,CL:0002371,CL:0000766,CL:0002274,CL:0000219,CL:0000163,CL:0000457,CL:0000738,CL:0000255,CL:0000097
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000260,FF:0000261
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr3:128212033..128212051,-!p1@GATA2!3.42!2645.90!GATA2;;chr19:45971246..45971265,+!p1@FOSB!2.59!6739.19!FOSB;;chr14:75988831..75988847,+!p2@BATF!2.51!322.54!BATF;;chrX:106960285..106960299,-!p1@TSC22D3!2.20!3926.26!TSC22D3;;chr21:39870339..39870443,-!p1@ERG!2.11!128.70!ERG;;chr14:75988771..75988826,+!p1@BATF!2.10!163.86!BATF;;chr7:50344289..50344323,+!p1@IKZF1!2.04!108.95!IKZF1;;chr14:75988851..75988862,+!p3@BATF!2.00!99.30!BATF;;chr7:50344251..50344288,+!p3@IKZF1!1.98!95.26!IKZF1;;chr14:35872453..35872485,-!p2@NFKBIA!1.97!219.64!NFKBIA;;chr6:135502501..135502546,+!p1@MYB!1.90!92.53!MYB;;chr12:52445218..52445237,+!p1@NR4A1!1.87!866.31!NR4A1;;chr14:75745523..75745537,+!p1@FOS!1.86!8044.34!FOS;;chrX:48644984..48645005,+!p1@GATA1!1.85!70.47!GATA1;;chr7:28725740..28725778,+!p1@CREB5!1.82!547.37!CREB5;;chr3:63953435..63953499,+!p1@ATXN7!1.80!62.40!ATXN7;;chr20:50159198..50159299,-!p1@NFATC2!1.79!86.33!NFATC2;;chr19:18391615..18391637,-!p5@JUND!1.78!76.67!JUND;;chr9:3525727..3525828,-!p2@RFX3!1.76!140.52!RFX3;;chr14:74256787..74256858,-!p6@C14orf43!1.75!55.05!C14orf43;;chr2:157189180..157189290,-!p1@NR4A2!1.73!263.31!NR4A2;;chr7:50343634..50343717,+!p2@IKZF1!1.73!53.18!IKZF1;;chr2:145277640..145277771,-!p1@ZEB2!1.70!616.98!ZEB2;;chr14:75746340..75746368,+!p3@FOS!1.69!47.56!FOS;;chr18:77155922..77155939,+!p1@NFATC1!1.68!123.22!NFATC1;;chr19:54041669..54041697,+!p2@ZNF331!1.68!46.69!ZNF331;;chr7:28725715..28725727,+!p3@CREB5!1.67!53.47!CREB5;;chr3:128205876..128205904,-!p4@GATA2!1.65!44.10!GATA2;;chr1:59249688..59249703,-!p3@JUN!1.64!243.27!JUN;;chr7:138666053..138666146,-!p1@KIAA1549!1.63!165.74!KIAA1549;;chr17:38497662..38497713,+!p4@RARA!1.63!48.42!RARA;;chr14:35873947..35873965,-!p1@NFKBIA!1.62!2425.68!NFKBIA;;chr14:75746722..75746777,+!p2@FOS!1.62!52.03!FOS;;chr1:92951607..92951661,-!p1@GFI1!1.62!40.64!GFI1;;chr2:61108695..61108753,+!p1@REL!1.60!254.80!REL;;chr3:69788576..69788648,+!p1@MITF!1.60!199.03!MITF;;chr11:47400078..47400106,-!p1@SPI1!1.59!38.19!SPI1;;chr14:35872962..35873025,-!p3@NFKBIA!1.57!88.20!NFKBIA;;chr1:47697881..47697910,-!p4@TAL1!1.55!34.44!TAL1;;chr19:13213511..13213545,-!p2@LYL1!1.54!36.61!LYL1;;chr1:47695003..47695042,-!p2@TAL1!1.53!33.00!TAL1;;chr12:124968706..124968748,-!p18@NCOR2!1.52!32.43!NCOR2;;chr3:128206762..128206781,-!p2@GATA2!1.51!187.50!GATA2;;chr19:54058073..54058088,+!p1@ZNF331!1.51!31.71!ZNF331;;chr3:128205779..128205797,-!p5@GATA2!1.51!31.27!GATA2;;chr9:73028814..73028895,-!p1@KLF9!1.50!287.09!KLF9;;chr3:39195075..39195088,-!p1@CSRNP1!1.50!182.60!CSRNP1;;chr3:128205801..128205819,-!p6@GATA2!1.50!30.55!GATA2;;chr6:15401104..15401166,+!p5@JARID2!1.50!30.55!JARID2;;chr1:158985493..158985535,+!p4@IFI16!1.48!44.10!IFI16;;chr2:145271342..145271377,-!p5@ZEB2!1.48!28.97!ZEB2;;chr19:45252008..45252024,+!p2@BCL3!1.47!92.38!BCL3;;chr3:39195037..39195069,-!p2@CSRNP1!1.46!167.04!CSRNP1;;chr3:141150883..141150961,+!p6@ZBTB38!1.45!27.24!ZBTB38;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.44!26.37!ZBED1;;chr7:17338324..17338341,+!p3@AHR!1.43!84.89!AHR;;chr1:25256756..25256774,-!p1@RUNX3!1.42!46.98!RUNX3;;chr13:41593425..41593480,-!p1@ELF1!1.41!151.76!ELF1;;chr19:45972701..45972774,+!p2@FOSB!1.41!33.72!FOSB;;chr12:52448420..52448460,+!p5@NR4A1!1.40!24.36!NR4A1;;chr14:35874077..35874091,-!p8@NFKBIA!1.40!23.92!NFKBIA;;chr7:17338266..17338282,+!p1@AHR!1.38!236.93!AHR;;chr22:38597987..38598021,+!p2@MAFF!1.38!136.77!MAFF;;chr1:204042233..204042249,+!p1@SOX13!1.37!137.92!SOX13;;chr18:22932080..22932170,-!p1@ZNF521!1.35!88.49!ZNF521;;chr8:22550982..22550999,-!p1@EGR3!1.35!59.52!EGR3;;chr19:18392422..18392440,-!p1@JUND!1.34!2750.24!JUND;;chr2:208031542..208031595,-!p2@KLF7!1.34!143.83!KLF7;;chr8:81397820..81397836,+!p2@ZBTB10!1.34!25.94!ZBTB10;;chr9:135854091..135854159,+!p1@GFI1B!1.34!21.04!GFI1B;;chr1:59249707..59249727,-!p1@JUN!1.33!817.88!JUN;;chr10:104154246..104154347,+!p3@NFKB2!1.33!120.20!NFKB2;;chr6:135502408..135502459,+!p2@MYB!1.33!23.35!MYB;;chr3:101568349..101568365,+!p1@NFKBIZ!1.31!984.63!NFKBIZ;;chr6:45390343..45390388,+!p10@RUNX2!1.30!25.37!RUNX2;;chr1:158985469..158985489,+!p7@IFI16!1.30!22.19!IFI16;;chr7:138665870..138665905,-!p4@KIAA1549!1.30!18.74!KIAA1549;;chr14:35873101..35873119,-!p6@NFKBIA!1.29!24.64!NFKBIA;;chr12:72056800..72056834,+!p1@THAP2!1.28!24.36!THAP2;;chr12:52448151..52448200,+!p8@NR4A1!1.28!18.16!NR4A1;;chr12:52431016..52431071,+!p4@NR4A1!1.26!20.18!NR4A1;;chr19:54041645..54041661,+!p5@ZNF331!1.26!17.29!ZNF331;;chr10:3827389..3827408,-!p1@KLF6!1.24!1213.06!KLF6;;chr19:16435625..16435682,+!p1@KLF2!1.24!509.75!KLF2;;chr4:103422499..103422632,+!p1@NFKB1!1.24!335.66!NFKB1;;chr9:73029219..73029289,-!p2@KLF9!1.24!49.29!KLF9;;chr6:108882109..108882173,+!p2@FOXO3!1.23!84.02!FOXO3;;chr2:178128250..178128293,-!p6@NFE2L2!1.23!40.21!NFE2L2;;chr12:52448213..52448262,+!p6@NR4A1!1.23!16.00!NR4A1;;chr2:43453734..43453751,-!p1@ZFP36L2!1.22!1605.06!ZFP36L2;;chr1:59249732..59249749,-!p2@JUN!1.22!187.21!JUN;;chr2:97202480..97202499,+!p1@ARID5A!1.22!154.78!ARID5A;;chr9:102584262..102584276,+!p1@NR4A3!1.22!34.30!NR4A3;;chr20:34359925..34359991,+!p1@PHF20!1.21!648.83!PHF20;;chr11:128563948..128564003,+!p1@FLI1!1.21!180.87!FLI1;;chr19:6110474..6110551,-!p1@RFX2!1.21!90.36!RFX2;;chr1:47697539..47697573,-!p3@TAL1!1.21!15.13!TAL1;;chr8:60031619..60031676,-!p1@TOX!1.20!31.99!TOX;;chr19:18391708..18391737,-!p7@JUND!1.20!22.63!JUND;;chr19:13213555..13213568,-!p5@LYL1!1.20!14.99!LYL1;;chr19:16435705..16435726,+!p3@KLF2!1.20!14.70!KLF2;;chr10:3824646..3824677,-!p9@KLF6!1.20!14.70!KLF6;;chr9:110252035..110252057,-!p1@KLF4!1.19!228.00!KLF4;;chr15:50647274..50647336,-!p1@GABPB1!1.19!100.16!GABPB1;;chr6:45390300..45390335,+!p4@RUNX2!1.19!22.63!RUNX2;;chr14:75746664..75746683,+!p7@FOS!1.19!14.56!FOS;;chr18:3448455..3448480,+!p5@TGIF1!1.18!25.80!TGIF1;;chr10:3827371..3827386,-!p2@KLF6!1.17!113.85!KLF6;;chr4:81118647..81118666,+!p1@PRDM8!1.17!18.45!PRDM8;;chr12:52448338..52448401,+!p7@NR4A1!1.17!13.84!NR4A1;;chr2:61108650..61108687,+!p2@REL!1.16!66.30!REL;;chr6:45389791..45389832,+!p3@RUNX2!1.16!33.87!RUNX2;;chr19:36391434..36391450,-!p1@NFKBID!1.16!26.23!NFKBID;;chr12:52430894..52430952,+!p3@NR4A1!1.16!25.80!NR4A1;;chr18:3448422..3448439,+!p11@TGIF1!1.16!19.60!TGIF1;;chr14:64970670..64970712,-!p3@ZBTB25!1.15!28.39!ZBTB25;;chr4:87857433..87857472,+!p9@AFF1!1.15!23.35!AFF1;;chr19:45971060..45971122,+!p3@FOSB!1.15!13.26!FOSB;;chr7:138665915..138665946,-!p3@KIAA1549!1.15!13.11!KIAA1549;;chrX:101186981..101187030,-!p1@ZMAT1!1.14!41.51!ZMAT1;;chr9:73028598..73028617,-!p5@KLF9!1.14!21.76!KLF9;;chr20:50179368..50179392,-!p2@NFATC2!1.14!16.43!NFATC2;;chr10:35484053..35484076,+!p1@CREM!1.13!31.42!CREM;;chr15:37390850..37390909,-!p3@MEIS2!1.13!24.64!MEIS2;;chr9:102584241..102584261,+!p4@NR4A3!1.13!19.46!NR4A3;;chr10:3824125..3824146,-!p12@KLF6!1.13!12.39!KLF6;;chr19:12902289..12902307,+!p1@JUNB!1.12!2777.05!JUNB;;chr4:106068026..106068084,+!p1@TET2!1.12!108.67!TET2;;chr9:102584128..102584144,+!p3@NR4A3!1.12!23.49!NR4A3;;chr4:87857474..87857489,+!p7@AFF1!1.12!21.19!AFF1;;chr11:113930291..113930339,+!p2@ZBTB16!1.12!20.18!ZBTB16;;chr6:45390269..45390298,+!p5@RUNX2!1.12!20.03!RUNX2;;chr8:81397876..81397898,+!p5@ZBTB10!1.12!14.56!ZBTB10;;chr1:8585945..8586056,-!p3@RERE!1.11!39.92!RERE;;chr8:123793988..123794016,+!p1@ZHX2!1.11!20.90!ZHX2;;chr19:6110555..6110617,-!p2@RFX2!1.10!39.78!RFX2;;chr10:3824332..3824425,-!p4@KLF6!1.10!18.74!KLF6;;chr14:35872414..35872425,-!p7@NFKBIA!1.10!13.11!NFKBIA;;chr14:35874125..35874149,-!p11@NFKBIA!1.10!11.67!NFKBIA;;chr10:129535441..129535454,+!p1@FOXI2!1.10!11.53!FOXI2;;chr10:3827417..3827428,-!p3@KLF6!1.09!97.28!KLF6;;chr11:47400045..47400060,-!p6@SPI1!1.09!11.24!SPI1;;chr7:17338239..17338262,+!p2@AHR!1.08!83.01!AHR;;chr12:26277956..26277980,-!p1@BHLHE41!1.08!40.21!BHLHE41;;chr17:38498594..38498661,+!p2@RARA!1.08!37.33!RARA;;chr2:208394817..208394834,+!p3@CREB1!1.07!43.96!CREB1;;chr9:117150254..117150271,-!p1@AKNA!1.07!29.40!AKNA;;chr19:18391652..18391669,-!p8@JUND!1.07!14.99!JUND;;chr14:75746579..75746605,+!p9@FOS!1.07!10.66!FOS;;chr11:47399996..47400014,-!p4@SPI1!1.06!10.38!SPI1;;chr19:45504688..45504782,+!p1@RELB!1.05!62.12!RELB;;chr12:54694758..54694805,-!p1@NFE2!1.05!12.39!NFE2;;chr14:35873069..35873078,-!p13@NFKBIA!1.05!10.23!NFKBIA;;chr1:158985553..158985574,+!p14@IFI16!1.05!10.23!IFI16;;chr2:8822176..8822196,+!p1@ID2!1.04!1407.48!ID2;;chr1:212782094..212782109,+!p1@ATF3!1.04!275.12!ATF3;;chr6:157100031..157100112,+!p2@ARID1B!1.04!55.20!ARID1B;;chr13:72441315..72441454,-!p1@DACH1!1.04!20.32!DACH1;;chr9:102584159..102584174,+!p2@NR4A3!1.04!18.30!NR4A3;;chr19:13213662..13213686,-!p1@LYL1!1.04!14.84!LYL1;;chr8:81397846..81397860,+!p3@ZBTB10!1.04!12.68!ZBTB10;;chr6:144385698..144385742,-!p2@PLAGL1!1.04!12.11!PLAGL1;;chr7:137620684..137620711,-!p4@CREB3L2!1.04!10.09!CREB3L2;;chr7:28725585..28725608,+!p11@CREB5!1.04!9.94!CREB5;;chr14:75746705..75746720,+!p8@FOS!1.04!9.94!FOS;;chrX:106960180..106960197,-!p2@TSC22D3!1.03!37.47!TSC22D3;;chr3:114866084..114866118,-!p2@ZBTB20!1.03!35.89!ZBTB20;;chr8:60031682..60031710,-!p2@TOX!1.03!15.85!TOX;;chrX:106960249..106960260,-!p5@TSC22D3!1.03!15.71!TSC22D3;;chr7:137620650..137620677,-!p3@CREB3L2!1.03!9.80!CREB3L2;;chr19:16435735..16435773,+!p4@KLF2!1.03!9.66!KLF2;;chr1:151030536..151030549,+!p8@MLLT11!1.03!9.66!MLLT11;;chr1:47696918..47696935,-!p6@TAL1!1.03!9.66!TAL1;;chr19:11925071..11925113,+!p1@ZNF440!1.02!68.89!ZNF440;;chr21:36421535..36421610,-!p2@RUNX1!1.02!34.44!RUNX1;;chr19:54041574..54041589,+!p6@ZNF331!1.02!9.51!ZNF331;;chr19:45972563..45972577,+!p17@FOSB!1.02!9.37!FOSB;;chr1:47691303..47691319,-!p5@TAL1!1.02!9.37!TAL1;;chr2:61108771..61108789,+!p4@REL!1.01!14.12!REL;;chr19:54041508..54041527,+!p8@ZNF331!1.01!9.22!ZNF331;;chr2:145274900..145274934,-!p4@ZEB2!1.00!55.63!ZEB2;;chr13:45011349..45011391,-!p4@TSC22D1!1.00!22.48!TSC22D1;;chr11:113930425..113930471,+!p1@ZBTB16!1.00!13.26!ZBTB16;;chr17:74137321..74137337,-!p1@FOXJ1!1.00!9.08!FOXJ1;;chr6:135502472..135502489,+!p3@MYB!1.00!8.94!MYB;;chr19:11959532..11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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000097;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000151;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
+|ffid_belonging_in_development=CL:0000049,CL:0000134
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mast%2520cell%252c%2520donor3.CNhs12593.11566-120D9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mast%2520cell%252c%2520donor3.CNhs12593.11566-120D9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Mast%2520cell%252c%2520donor3.CNhs12593.11566-120D9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mast%2520cell%252c%2520donor3.CNhs12593.11566-120D9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Mast%2520cell%252c%2520donor3.CNhs12593.11566-120D9.hg38.nobarcode.ctss.bed.gz
 |id=FF:11566-120D9
-|is_a=EFO:0002091;;FF:0000002;;FF:0000210;;FF:0000261
+|is_a=EFO:0002091;;FF:0000210;;FF:0000261
+|is_obsolete=
+|library_id=CNhs12593
+|library_id_phase_based=2:CNhs12593
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11566
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10014.AGTTCC.11566
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11566
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10014.AGTTCC.11566
 |name=Mast cell, donor3
 |namespace=FANTOM5
@@ Line 42: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs12593,LSID912,release011,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10014,,,
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 |rna_box=120
 |rna_catalog_number=
@@ Line 56: / Line 82: @@
 |rna_tube_id=120D9
 |rna_weight_ug=7.9
+|rnaseq_library_id=SRhi10014.AGTTCC
 |sample_age=76
+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 77: / Line 105: @@
 |sample_tissue=skin
 |top_motifs=ATF4:3.10607667868;CREB1:2.67714808131;GATA6:2.49634917986;AR:2.15266924992;ATF5_CREB3:2.12133485218;FOX{I1,J2}:2.08435497079;NFKB1_REL_RELA:2.08170994721;RFX1:2.08140036543;PAX2:2.01025250652;FOX{D1,D2}:1.95777212704;STAT1,3:1.95008124302;FOXN1:1.79799622167;PPARG:1.7666408519;RFX2..5_RFXANK_RFXAP:1.722379697;EP300:1.69285299017;EGR1..3:1.60442418716;HIF1A:1.58114351031;DMAP1_NCOR{1,2}_SMARC:1.49178341069;HSF1,2:1.48291260797;TFAP2{A,C}:1.4795961718;SREBF1,2:1.47463231262;PATZ1:1.4032714707;ATF2:1.35988674305;JUN:1.33653201393;RUNX1..3:1.3240648485;CDX1,2,4:1.31353880274;SPIB:1.29397164893;MAFB:1.28082204488;ELF1,2,4:1.23174443196;BPTF:1.22615395311;SPI1:1.12799579306;SP1:1.11259024971;HBP1_HMGB_SSRP1_UBTF:1.10092692369;TGIF1:1.07962683043;TLX2:1.03375651575;FOX{F1,F2,J1}:1.02694063461;NHLH1,2:0.921826205603;RXRA_VDR{dimer}:0.920809801267;CRX:0.908411004423;ESR1:0.867607737211;IKZF2:0.851454952148;ETS1,2:0.851433693211;DBP:0.831365708982;XBP1:0.77392399701;FOS_FOS{B,L1}_JUN{B,D}:0.747670987994;MYB:0.733240068607;MAZ:0.702873255289;ZFP161:0.694096836413;NFIL3:0.69040146451;HOXA9_MEIS1:0.687744443322;FOSL2:0.680645744957;ESRRA:0.637408797779;ATF6:0.633597391035;NANOG{mouse}:0.623098891784;TFAP4:0.622687444335;MEF2{A,B,C,D}:0.61063713944;BREu{core}:0.554034233627;ZNF238:0.552019189751;BACH2:0.530268315001;EBF1:0.485820087485;NFE2:0.481609393031;ALX1:0.400217230747;NFE2L1:0.398850597344;NFATC1..3:0.369315479924;MYFfamily:0.350605794021;RXR{A,B,G}:0.323089609324;SMAD1..7,9:0.319167097469;SOX2:0.286050529673;TFCP2:0.28070707828;FOXP1:0.262806457186;NR6A1:0.242718401842;HOX{A6,A7,B6,B7}:0.24086644074;PAX6:0.236803842287;SPZ1:0.228773779817;POU2F1..3:0.216124098532;PBX1:0.215837484344;ZNF148:0.159840496583;STAT2,4,6:0.153822594953;TFAP2B:0.11605781876;SOX5:0.094472869924;PAX1,9:0.06013378576;SRF:0.0195992406439;NKX6-1,2:0.00548310600246;HIC1:-0.0171695645982;bHLH_family:-0.0204888299082;HMX1:-0.0238149300702;MTF1:-0.0269939284203;FOXO1,3,4:-0.0303633724296;TBP:-0.0358521327643;HES1:-0.0404598852882;NKX3-2:-0.0686550019054;VSX1,2:-0.0720533419964;MED-1{core}:-0.0762653124429;MTE{core}:-0.0813443046456;ZIC1..3:-0.0918527975181;MZF1:-0.100464992132;TBX4,5:-0.124677062386;GLI1..3:-0.137674819994;CUX2:-0.137969533603;ELK1,4_GABP{A,B1}:-0.1527984713;NFY{A,B,C}:-0.154998844271;NFE2L2:-0.18387471407;TOPORS:-0.190756193064;T:-0.205167811698;PAX5:-0.211921551228;TAL1_TCF{3,4,12}:-0.220406724418;REST:-0.220610122714;GTF2I:-0.263525228106;NRF1:-0.273049394081;IRF1,2:-0.27394618235;ZBTB6:-0.280949839526;FOXL1:-0.28919931951;XCPE1{core}:-0.298717798321;PITX1..3:-0.342650204579;PAX3,7:-0.34291846988;RORA:-0.349669351597;GZF1:-0.352063680863;HNF4A_NR2F1,2:-0.362780355752;STAT5{A,B}:-0.371767521124;EVI1:-0.37592388161;HLF:-0.376145559177;EN1,2:-0.389033650942;ZNF423:-0.391933955849;RREB1:-0.403975934078;FOXM1:-0.422965334099;ZNF143:-0.437259107581;POU6F1:-0.450502964594;AHR_ARNT_ARNT2:-0.451974451367;PAX4:-0.45217353312;TLX1..3_NFIC{dimer}:-0.471559517966;E2F1..5:-0.501051239087;SOX{8,9,10}:-0.513766075677;ARID5B:-0.544250709502;HOX{A5,B5}:-0.555363941153;PRRX1,2:-0.560471993246;CEBPA,B_DDIT3:-0.584565105536;HNF1A:-0.600131394549;TFDP1:-0.603825881433;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.608035316757;ZNF384:-0.610238847521;ZBTB16:-0.619849902316;IKZF1:-0.643037108349;NKX2-1,4:-0.671360320548;LHX3,4:-0.680503483351;FOXP3:-0.68753591185;TEAD1:-0.728389133204;YY1:-0.735296186729;HAND1,2:-0.740946840141;POU1F1:-0.757157495953;FOXQ1:-0.763826789204;ZEB1:-0.775066191531;NKX2-3_NKX2-5:-0.826626596601;NKX3-1:-0.839875346825;LEF1_TCF7_TCF7L1,2:-0.85891424372;GATA4:-0.866857678229;AIRE:-0.870439695551;TP53:-0.882708892451;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.890182584423;SNAI1..3:-0.928500159424;FOXD3:-0.932857806919;NR3C1:-0.938061610148;GTF2A1,2:-0.958178655054;PRDM1:-0.968989674501;SOX17:-0.973569899879;PAX8:-1.03564109098;NFIX:-1.04874980798;RBPJ:-1.05054057496;NANOG:-1.07459656017;NKX2-2,8:-1.12827146451;NR5A1,2:-1.14830243033;IRF7:-1.22753522628;ONECUT1,2:-1.2295729705;OCT4_SOX2{dimer}:-1.24102896954;UFEwm:-1.30191167038;POU5F1:-1.36091088293;MYOD1:-1.36240045845;GFI1:-1.40542352586;HOX{A4,D4}:-1.40979240335;HMGA1,2:-1.45937142733;MYBL2:-1.53164808574;FOXA2:-1.57135044217;NR1H4:-1.73071079654;GFI1B:-1.874153023;ALX4:-2.1031140199;TEF:-2.10506517716;ADNP_IRX_SIX_ZHX:-2.12241040844;KLF4:-2.1900278024;CDC5L:-2.23136010439;LMO2:-2.26167030539;GCM1,2:-2.33037416272;POU3F1..4:-2.59679556694;PDX1:-2.65255606628
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11566-120D9;search_select_hide=table117:FF:11566-120D9
 }}

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FF:11566-120D9: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:09, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0