FF:10637-108I7: Difference between revisions

Latest revision as of 14:32, 3 June 2020

Name:	neuroectodermal tumor cell line:FU-RPNT-1
Species:	Human (Homo sapiens)
Library ID:	CNhs11744
Sample type:	cell lines
Genomic View:	UCSC
RefEX:	Specific genes
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	kidney
dev stage	NA
sex	male
age	22
cell type	unclassifiable
cell line	FU-RPNT-1
company	RIKEN Bioresource centre
collaboration	Yukio Nakamura (RIKEN BRC)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	NA
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005971

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs11744		CAGE		DRX007964		DRR008836

Accession ID Hg19

Library id		BAM		CTSS
CNhs11744		DRZ000261		DRZ001646

Accession ID Hg38

Library id		BAM		CTSS
CNhs11744		DRZ011611		DRZ012996

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.396
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.379
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.0837
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0837
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0.267
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.129
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.466
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.106
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0.0837
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0.0837
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.136
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0.0837
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.159
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	0.307
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	-6.027533e-5
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.0353
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.0837
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.00484
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.261
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.357
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0.0837
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0.214
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0.314
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	1.024
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11744

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.00183
MA0003.1	MA0003.1	0.142
MA0004.1	MA0004.1	0.48
MA0006.1	MA0006.1	0.0789
MA0007.1	MA0007.1	0.199
MA0009.1	MA0009.1	0.36
MA0014.1	MA0014.1	0.511
MA0017.1	MA0017.1	0.00266
MA0018.2	MA0018.2	0.192
MA0019.1	MA0019.1	0.206
MA0024.1	MA0024.1	0.00194
MA0025.1	MA0025.1	0.0687
MA0027.1	MA0027.1	0.243
MA0028.1	MA0028.1	0.343
MA0029.1	MA0029.1	0.489
MA0030.1	MA0030.1	0.193
MA0031.1	MA0031.1	0.17
MA0035.2	MA0035.2	0.046
MA0038.1	MA0038.1	0.449
MA0039.2	MA0039.2	0.0162
MA0040.1	MA0040.1	0.0823
MA0041.1	MA0041.1	0.165
MA0042.1	MA0042.1	0.335
MA0043.1	MA0043.1	0.847
MA0046.1	MA0046.1	0.00315
MA0047.2	MA0047.2	0.647
MA0048.1	MA0048.1	0.199
MA0050.1	MA0050.1	5.82888e-5
MA0051.1	MA0051.1	0.008
MA0052.1	MA0052.1	0.105
MA0055.1	MA0055.1	0.282
MA0057.1	MA0057.1	0.109
MA0058.1	MA0058.1	0.323
MA0059.1	MA0059.1	0.574
MA0060.1	MA0060.1	0.181
MA0061.1	MA0061.1	0.0818
MA0062.2	MA0062.2	0.648
MA0065.2	MA0065.2	0.0049
MA0066.1	MA0066.1	0.131
MA0067.1	MA0067.1	0.582
MA0068.1	MA0068.1	0.872
MA0069.1	MA0069.1	0.62
MA0070.1	MA0070.1	0.71
MA0071.1	MA0071.1	0.233
MA0072.1	MA0072.1	0.509
MA0073.1	MA0073.1	0.391
MA0074.1	MA0074.1	0.839
MA0076.1	MA0076.1	0.104
MA0077.1	MA0077.1	0.525
MA0078.1	MA0078.1	0.505
MA0079.2	MA0079.2	0.0894
MA0080.2	MA0080.2	2.68985e-10
MA0081.1	MA0081.1	0.134
MA0083.1	MA0083.1	0.00757
MA0084.1	MA0084.1	0.456
MA0087.1	MA0087.1	0.268
MA0088.1	MA0088.1	0.377
MA0090.1	MA0090.1	0.373
MA0091.1	MA0091.1	0.595
MA0092.1	MA0092.1	0.3
MA0093.1	MA0093.1	0.415
MA0099.2	MA0099.2	2.79172e-26
MA0100.1	MA0100.1	0.661
MA0101.1	MA0101.1	0.0596
MA0102.2	MA0102.2	0.00204
MA0103.1	MA0103.1	0.132
MA0104.2	MA0104.2	0.105
MA0105.1	MA0105.1	0.76
MA0106.1	MA0106.1	0.232
MA0107.1	MA0107.1	0.0276
MA0108.2	MA0108.2	9.38782e-4
MA0111.1	MA0111.1	0.969
MA0112.2	MA0112.2	7.29479e-4
MA0113.1	MA0113.1	0.108
MA0114.1	MA0114.1	0.00836
MA0115.1	MA0115.1	0.407
MA0116.1	MA0116.1	0.264
MA0117.1	MA0117.1	0.699
MA0119.1	MA0119.1	0.78
MA0122.1	MA0122.1	0.22
MA0124.1	MA0124.1	0.143
MA0125.1	MA0125.1	0.369
MA0131.1	MA0131.1	0.355
MA0135.1	MA0135.1	0.0181
MA0136.1	MA0136.1	5.9109e-8
MA0137.2	MA0137.2	0.0725
MA0138.2	MA0138.2	0.368
MA0139.1	MA0139.1	0.788
MA0140.1	MA0140.1	0.0157
MA0141.1	MA0141.1	0.0197
MA0142.1	MA0142.1	0.904
MA0143.1	MA0143.1	0.311
MA0144.1	MA0144.1	0.00695
MA0145.1	MA0145.1	0.00692
MA0146.1	MA0146.1	0.101
MA0147.1	MA0147.1	0.0826
MA0148.1	MA0148.1	0.836
MA0149.1	MA0149.1	0.168
MA0150.1	MA0150.1	3.67119e-5
MA0152.1	MA0152.1	0.445
MA0153.1	MA0153.1	0.115
MA0154.1	MA0154.1	0.0796
MA0155.1	MA0155.1	0.358
MA0156.1	MA0156.1	0.00117
MA0157.1	MA0157.1	0.269
MA0159.1	MA0159.1	0.0118
MA0160.1	MA0160.1	0.00195
MA0162.1	MA0162.1	0.265
MA0163.1	MA0163.1	0.798
MA0164.1	MA0164.1	0.676
MA0258.1	MA0258.1	0.0551
MA0259.1	MA0259.1	0.0789

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs11744

Novel motif	Logo	P-value
1	1	0.717
10	10	0.852
100	100	0.476
101	101	0.861
102	102	0.509
103	103	0.0533
104	104	0.303
105	105	0.207
106	106	2.19928e-4
107	107	0.016
108	108	0.603
109	109	0.00552
11	11	0.233
110	110	0.532
111	111	0.408
112	112	0.464
113	113	0.442
114	114	0.234
115	115	0.412
116	116	0.454
117	117	0.665
118	118	0.811
119	119	0.734
12	12	0.488
120	120	0.754
121	121	0.069
122	122	0.0392
123	123	0.047
124	124	0.899
125	125	0.992
126	126	0.26
127	127	0.146
128	128	0.0371
129	129	0.52
13	13	0.694
130	130	0.83
131	131	0.302
132	132	0.645
133	133	0.874
134	134	0.72
135	135	0.206
136	136	0.0583
137	137	0.465
138	138	0.879
139	139	0.192
14	14	0.561
140	140	0.507
141	141	0.255
142	142	0.416
143	143	0.0217
144	144	0.408
145	145	0.739
146	146	0.635
147	147	0.741
148	148	0.0345
149	149	0.0836
15	15	0.38
150	150	0.238
151	151	0.308
152	152	0.00116
153	153	0.988
154	154	0.535
155	155	0.916
156	156	0.655
157	157	0.703
158	158	0.142
159	159	0.0102
16	16	0.163
160	160	0.752
161	161	0.525
162	162	0.443
163	163	0.533
164	164	0.628
165	165	0.826
166	166	0.897
167	167	0.588
168	168	0.246
169	169	0.0208
17	17	0.109
18	18	0.264
19	19	0.081
2	2	0.0942
20	20	0.702
21	21	0.574
22	22	0.0451
23	23	0.0295
24	24	0.0618
25	25	0.679
26	26	0.336
27	27	0.231
28	28	0.864
29	29	0.67
3	3	0.859
30	30	0.14
31	31	0.52
32	32	0.05
33	33	0.674
34	34	0.246
35	35	0.729
36	36	0.239
37	37	0.0766
38	38	0.375
39	39	0.313
4	4	0.942
40	40	0.281
41	41	0.0753
42	42	0.783
43	43	0.369
44	44	0.139
45	45	0.171
46	46	0.358
47	47	0.674
48	48	0.508
49	49	0.554
5	5	0.407
50	50	0.503
51	51	0.616
52	52	0.0988
53	53	0.796
54	54	0.26
55	55	0.834
56	56	0.477
57	57	0.545
58	58	0.601
59	59	0.0155
6	6	0.565
60	60	0.0311
61	61	0.508
62	62	0.291
63	63	0.427
64	64	0.83
65	65	0.152
66	66	0.461
67	67	0.82
68	68	0.518
69	69	0.338
7	7	0.465
70	70	0.0614
71	71	0.373
72	72	0.29
73	73	0.00186
74	74	0.714
75	75	0.556
76	76	0.303
77	77	0.0222
78	78	0.451
79	79	0.721
8	8	0.466
80	80	0.0444
81	81	0.847
82	82	0.828
83	83	0.563
84	84	0.741
85	85	0.0519
86	86	0.613
87	87	0.00554
88	88	0.664
89	89	0.0272
9	9	0.0972
90	90	0.282
91	91	0.382
92	92	0.076
93	93	0.907
94	94	0.24
95	95	0.0156
96	96	0.437
97	97	0.786
98	98	0.343
99	99	0.826

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs11744

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
DOID:171 neuroectodermal tumor
EFO:0002091 biological replicate
FF:0000003 cell line sample
FF:0000210 human sample
UBERON:0002346 neurectoderm

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

DOID: Disease
4 (disease)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
171 (neuroectodermal tumor)
3095 (germ cell and embryonal cancer)
2994 (germ cell cancer)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000922 (embryo)
0000479 (tissue)
0002346 (neurectoderm)
0004121 (ectoderm-derived structure)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000923 (germ layer)
0002050 (embryonic structure)
0005423 (developing anatomical structure)
0001062 (anatomical entity)
0010316 (germ layer / neural crest)
0005291 (embryonic tissue)
0010317 (germ layer / neural crest derived structure)

FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006601 (presumptive ectoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000479,UBERON:0002346,UBERON:0000061,UBERON:0000465,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0000924,UBERON:0006601
+|DRA_sample_Accession=CAGE@SAMD00005971
+|accession_numbers=CAGE;DRX007964;DRR008836;DRZ000261;DRZ001646;DRZ011611;DRZ012996
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0000479,UBERON:0002346,UBERON:0004121,UBERON:0000061,UBERON:0000465,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0001062,UBERON:0010316,UBERON:0005291,UBERON:0010317
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=DOID:4,DOID:162,DOID:14566,DOID:0050687,DOID:171,DOID:3095,DOID:2994
+|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr1:214161272..214161322,+!p1@PROX1!2.69!671.31!PROX1;;chrX:25034067..25034088,-!p1@ARX!2.63!424.72!ARX;;chr7:31380292..31380351,-!p1@NEUROD6!2.51!319.07!NEUROD6;;chr7:19157248..19157268,-!p1@TWIST1!2.42!688.96!TWIST1;;chrX:30327504..30327509,-!p1@NR0B1!2.34!217.46!NR0B1;;chr4:174451370..174451387,-!p1@HAND2!2.30!196.42!HAND2;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!2.21!160.92!PEG3;;chr1:38512457..38512474,-!p1@POU3F1!2.14!150.72!POU3F1;;chr12:114845810..114845824,-!p1@TBX5!2.06!114.37!TBX5;;chr15:57511609..57511651,+!p2@TCF12!1.89!125.63!TCF12;;chr2:5832508..5832524,+!p1@SOX11!1.89!75.89!SOX11;;chr2:223163706..223163730,-!p1@PAX3!1.87!72.70!PAX3;;chr2:176972000..176972025,+!p4@HOXD11!1.78!59.73!HOXD11;;chr17:37764128..37764258,-!p1@NEUROD2!1.70!49.32!NEUROD2;;chr8:25902876..25902936,-!p1@EBF2!1.69!47.83!EBF2;;chr1:18957333..18957375,+!p1@PAX7!1.66!44.64!PAX7;;chr1:214161358..214161377,+!p3@PROX1!1.64!42.73!PROX1;;chr1:214161328..214161348,+!p2@PROX1!1.63!41.88!PROX1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.63!41.66!HOXC5;;chr2:73520667..73520683,-!p1@EGR4!1.62!40.60!EGR4;;chr10:118897911..118897974,-!p1@VAX1!1.62!40.39!VAX1;;chr12:114843940..114843955,-!p2@TBX5!1.61!39.96!TBX5;;chr3:189349162..189349207,+!p2@TP63!1.61!39.75!TP63;;chr1:164528616..164528660,+!p5@PBX1!1.57!71.64!PBX1;;chr1:170632285..170632309,+!p1@PRRX1!1.57!41.03!PRRX1;;chr16:67197654..67197716,+!p3@HSF4!1.57!35.93!HSF4;;chr1:170632477..170632506,+!p6@PRRX1!1.55!34.65!PRRX1;;chr12:114845834..114845848,-!p5@TBX5!1.55!34.44!TBX5;;chr4:174451350..174451363,-!p3@HAND2!1.54!33.59!HAND2;;chr1:25256756..25256774,-!p1@RUNX3!1.49!54.63!RUNX3;;chr22:19748231..19748317,+!p1@TBX1!1.48!29.55!TBX1;;chr1:170632439..170632465,+!p11@PRRX1!1.48!29.34!PRRX1;;chr10:118898078..118898093,-!p3@VAX1!1.47!28.49!VAX1;;chr13:100634031..100634045,+!p1@ZIC2!1.46!28.06!ZIC2;;chr17:46682321..46682362,-!p1@HOXB6!1.46!28.06!HOXB6;;chr1:170632137..170632172,+!p10@PRRX1!1.46!27.63!PRRX1;;chr6:10415484..10415508,-!p3@TFAP2A!1.45!27.42!TFAP2A;;chr7:121944689..121944705,-!p2@FEZF1!1.45!27.42!FEZF1;;chr17:46806035..46806059,-!p2@HOXB13!1.44!26.78!HOXB13;;chr7:121944796..121944814,-!p1@FEZF1!1.43!25.93!FEZF1;;chr6:10412600..10412637,-!p1@TFAP2A!1.42!41.88!TFAP2A;;chr12:54393880..54393962,+!p1@HOXC9!1.42!25.08!HOXC9;;chr2:166326200..166326216,+!p1@CSRNP3!1.40!34.65!CSRNP3;;chr2:176969097..176969109,+!p3@HOXD11!1.40!24.02!HOXD11;;chr10:131762504..131762555,-!p1@EBF3!1.39!23.38!EBF3;;chr13:100634004..100634025,+!p2@ZIC2!1.36!22.11!ZIC2;;chr3:181429704..181429722,+!p1@SOX2!1.35!21.47!SOX2;;chr19:46800289..46800327,+!p2@HIF3A!1.35!21.47!HIF3A;;chr4:111558135..111558198,-!p2@PITX2!1.32!19.77!PITX2;;chr20:42543441..42543497,+!p1@TOX2!1.31!84.60!TOX2;;chr14:99738138..99738163,-!p1@BCL11B!1.31!19.34!BCL11B;;chr13:100623375..100623425,-!p1@ZIC5!1.31!19.34!ZIC5;;chrY:21906594..21906622,-!p1@KDM5D!1.30!18.92!KDM5D;;chr2:176971980..176971995,+!p9@HOXD11!1.30!18.92!HOXD11;;chr2:177001290..177001315,+!p1@HOXD3!1.30!18.92!HOXD3;;chr8:40755333..40755352,-!p1@ZMAT4!1.29!18.71!ZMAT4;;chr11:129245736..129245758,+!p2@BARX2!1.29!18.49!BARX2;;chr1:170632115..170632136,+!p9@PRRX1!1.29!18.28!PRRX1;;chr2:145277640..145277771,-!p1@ZEB2!1.28!236.38!ZEB2;;chr8:106330656..106330684,+!p1@ZFPM2!1.28!46.55!ZFPM2;;chr19:49864746..49864780,-!p2@TEAD2!1.28!24.66!TEAD2;;chr2:176971685..176971700,+!p6@HOXD11!1.28!18.07!HOXD11;;chr12:54366894..54366922,+!p2@HOXC11!1.28!18.07!HOXC11;;chr13:79177703..79177729,-!p2@POU4F1!1.28!17.86!POU4F1;;chr8:93074803..93074845,-!p1@RUNX1T1!1.28!17.86!RUNX1T1;;chr1:18958008..18958023,+!p2@PAX7!1.27!17.43!PAX7;;chr3:193853927..193853944,+!p1@HES1!1.26!539.73!HES1;;chr14:37131058..37131139,+!p1@PAX9!1.26!17.22!PAX9;;chr13:79177674..79177701,-!p1@POU4F1!1.26!17.01!POU4F1;;chr14:73360799..73360817,-!p1@DPF3!1.25!56.76!DPF3;;chr12:54366949..54366973,+!p3@HOXC11!1.25!16.58!HOXC11;;chr8:37553261..37553282,+!p2@ZNF703!1.24!121.59!ZNF703;;chr1:164528687..164528711,+!p6@PBX1!1.24!19.13!PBX1;;chr8:77593474..77593612,+!p1@ZFHX4!1.23!67.17!ZFHX4;;chr12:96588368..96588394,+!p3@ELK3!1.23!42.30!ELK3;;chr5:158526917..158526932,-!p1@EBF1!1.23!39.33!EBF1;;chr20:42543506..42543549,+!p2@TOX2!1.21!36.14!TOX2;;chr2:177001336..177001357,+!p2@HOXD3!1.21!15.31!HOXD3;;chr11:16629630..16629643,-!p20@SOX6!1.21!15.09!SOX6;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!1.20!14.88!HOXC5;;chr11:16629369..16629392,-!p5@SOX6!1.20!14.67!SOX6;;chr2:25475120..25475176,-!p2@DNMT3A!1.19!19.56!DNMT3A;;chr12:54378923..54378966,+!p1@HOXC10!1.19!14.46!HOXC10;;chr14:21994337..21994442,-!p1@SALL2!1.18!38.90!SALL2;;chr1:197886461..197886558,+!p1@LHX9!1.18!14.24!LHX9;;chr2:66662281..66662308,+!p1@MEIS1!1.17!46.98!MEIS1;;chr9:20621927..20621996,-!p3@MLLT3!1.17!23.17!MLLT3;;chr14:95236551..95236576,-!p2@GSC!1.17!13.82!GSC;;chr11:15989432..15989436,-!p17@SOX6!1.16!13.60!SOX6;;chr12:54366975..54367001,+!p1@HOXC11!1.16!13.60!HOXC11;;chr2:63277948..63277974,+!p1@OTX1!1.15!12.97!OTX1;;chr2:88752207..88752218,-!p1@FOXI3!1.15!12.97!FOXI3;;chr6:10415276..10415341,-!p2@TFAP2A!1.14!15.52!TFAP2A;;chr2:176994408..176994492,+!p1@HOXD8!1.14!12.75!HOXD8;;chr3:181429741..181429767,+!p2@SOX2!1.14!12.75!SOX2;;chr11:16629650..16629667,-!p22@SOX6!1.13!12.54!SOX6;;chr9:132427883..132427951,+!p2@PRRX2!1.13!12.54!PRRX2;;chr2:66662249..66662267,+!p2@MEIS1!1.12!46.55!MEIS1;;chr16:86600426..86600441,+!p1@FOXC2!1.12!29.97!FOXC2;;chr6:10412392..10412409,-!p4@TFAP2A!1.12!13.82!TFAP2A;;chr8:65492915..65492932,+!p1@BHLHE22!1.12!12.33!BHLHE22;;chr2:176969228..176969260,+!p1@HOXD11!1.12!12.33!HOXD11;;chr12:54348655..54348693,+!p1@HOXC12!1.12!12.33!HOXC12;;chr5:92918768..92918783,+!p8@NR2F1!1.12!12.12!NR2F1;;chr19:58545454..58545498,+!p1@ZSCAN1!1.12!12.12!ZSCAN1;;chr2:176969179..176969226,+!p2@HOXD11!1.11!11.90!HOXD11;;chr2:176957443..176957457,+!p1@HOXD13!1.10!11.48!HOXD13;;chr2:25475094..25475112,-!p3@DNMT3A!1.10!11.48!DNMT3A;;chr11:16629597..16629610,-!p25@SOX6!1.10!11.48!SOX6;;chr1:151032142..151032195,+!p5@MLLT11!1.09!21.90!MLLT11;;chr11:44331576..44331650,-!p1@ALX4!1.08!11.05!ALX4;;chr1:170632250..170632277,+!p7@PRRX1!1.07!10.84!PRRX1;;chr2:177001366..177001379,+!p4@HOXD3!1.07!10.63!HOXD3;;chr8:81787006..81787031,-!p2@ZNF704!1.07!10.63!ZNF704;;chr9:86594530..86594564,-!p@chr9:86594530..86594564,-!1.06!40.60!HNRPK;;chr9:20622444..20622468,-!p2@MLLT3!1.06!34.65!MLLT3;;chr14:24837368..24837401,+!p1@NFATC4!1.06!24.66!NFATC4;;chr3:33482052..33482116,-!p2@UBP1!1.06!16.37!UBP1;;chr1:164528588..164528610,+!p8@PBX1!1.06!16.37!PBX1;;chr1:8763440..8763460,-!p2@RERE!1.05!51.87!RERE;;chr1:153940354..153940395,+!p1@CREB3L4!1.05!41.45!CREB3L4;;chr8:106330696..106330719,+!p2@ZFPM2!1.05!13.18!ZFPM2;;chr2:5832493..5832507,+!p2@SOX11!1.05!10.20!SOX11;;chr17:46688334..46688385,-!p1@HOXB7!1.04!14.46!HOXB7;;chr6:135502408..135502459,+!p2@MYB!1.04!11.48!MYB;;chr2:95963052..95963106,+!p1@KCNIP3!1.04!9.99!KCNIP3;;chr10:101292684..101292706,+!p1@NKX2-3!1.04!9.99!NKX2-3;;chr1:214161428..214161437,+!p6@PROX1!1.03!9.78!PROX1;;chr6:130339710..130339745,+!p1@L3MBTL3!1.02!76.10!L3MBTL3;;chr8:81398682..81398697,+!p6@ZBTB10!1.02!12.54!ZBTB10;;chr1:164528297..164528309,+!p9@PBX1!1.02!12.54!PBX1;;chr8:30890810..30890880,-!p1@PURG!1.02!9.57!PURG;;chr17:46806016..46806029,-!p5@HOXB13!1.02!9.57!HOXB13;;chr17:46806067..46806097,-!p1@HOXB13!1.02!9.57!HOXB13;;chr9:14314131..14314147,-!p2@NFIB!1.01!52.51!NFIB;;chr9:102584262..102584276,+!p1@NR4A3!1.01!21.04!NR4A3;;chr1:247171347..247171366,-!p2@ZNF695!1.01!17.22!ZNF695;;chr6:391743..391759,+!p1@IRF4!1.01!9.14!IRF4;;chr14:95236440..95236465,-!p1@GSC!1.01!9.14!GSC;;chr2:145277882..145277967,-!p3@ZEB2!1.00!15.73!ZEB2;;chr1:170632028..170632043,+!p20@PRRX1!1.00!8.93!PRRX1;;chr10:70320041..70320065,+!p2@TET1!1.00!8.93!TET1;;chr1:170633262..170633285,+!p3@PRRX1!0.99!10.20!PRRX1;;chr11:129245526..129245553,+!p1@BARX2!0.99!8.72!BARX2;;chr15:76629123..76629151,+!p1@ISL2!0.98!9.57!ISL2;;chr17:46806419..46806438,-!p4@HOXB13!0.98!8.50!HOXB13;;chr12:114843910..114843921,-!p6@TBX5!0.98!8.50!TBX5;;chr12:52445218..52445237,+!p1@NR4A1!0.97!108.84!NR4A1;;chr1:8763463..8763499,-!p6@RERE!0.97!23.38!RERE;;chr14:103059006..103059017,+!p2@RCOR1!0.97!13.18!RCOR1;;chr14:21994449..21994524,-!p2@SALL2!0.96!24.87!SALL2;;chr10:70320074..70320106,+!p1@TET1!0.96!16.58!TET1;;chr9:102584128..102584144,+!p3@NR4A3!0.96!15.94!NR4A3;;chr18:56532100..56532130,+!p1@ZNF532!0.96!15.31!ZNF532;;chr13:37494365..37494381,-!p1@SMAD9!0.96!14.24!SMAD9;;chr13:112721457..112721482,+!p1@SOX1!0.96!8.08!SOX1;;chr2:105470562..105470582,+!p@chr2:105470562..105470582,+!0.96!8.08!POU3F3;;chr1:170632051..170632081,+!p16@PRRX1!0.96!8.08!PRRX1;;chr1:18957605..18957623,+!p3@PAX7!0.96!8.08!PAX7;;chr1:18957627..18957640,+!p4@PAX7!0.96!8.08!PAX7;;chr8:37553292..37553317,+!p1@ZNF703!0.95!191.10!ZNF703;;chr1:249153114..249153175,-!p3@ZNF692!0.95!15.73!ZNF692;;chrX:84499081..84499115,+!p2@ZNF711!0.95!11.69!ZNF711;;chr1:170633348..170633399,+!p2@PRRX1!0.95!10.84!PRRX1;;chr1:214161619..214161629,+!p5@PROX1!0.95!7.87!PROX1;;chr19:31840130..31840160,-!p2@TSHZ3!0.94!12.12!TSHZ3;;chr15:57511589..57511608,+!p4@TCF12!0.94!7.65!TCF12;;chr1:227751231..227751273,+!p1@ZNF678!0.93!49.10!ZNF678;;chr19:31840438..31840470,-!p3@TSHZ3!0.93!9.57!TSHZ3;;chr1:8877692..8877732,-!p1@RERE!0.92!62.07!RERE;;chr7:150945754..150945789,-!p2@SMARCD3!0.92!23.60!SMARCD3;;chr17:7492684..7492778,-!p2@SOX15!0.92!15.94!SOX15;;chr5:92920456..92920488,+!p9@NR2F1!0.92!8.50!NR2F1;;chr1:40915725..40915808,+!p1@ZNF643!0.91!21.90!ZNF643;;chr7:19157043..19157088,-!p2@TWIST1!0.91!18.49!TWIST1;;chr6:1312325..1312340,+!p1@FOXQ1!0.91!11.90!FOXQ1;;chr11:128563948..128564003,+!p1@FLI1!0.90!86.94!FLI1;;chr5:158527104..158527135,-!p4@EBF1!0.90!7.01!EBF1;;chr13:100638100..100638115,+!p4@ZIC2!0.89!6.80!ZIC2;;chrY:21906761..21906810,-!p2@KDM5D!0.89!6.80!KDM5D;;chr2:176972047..176972063,+!p7@HOXD11!0.89!6.80!HOXD11;;chr2:85981107..85981120,+!p3@ATOH8!0.89!6.80!ATOH8;;chr8:86089417..86089440,+!p2@E2F5!0.88!13.60!E2F5;;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+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006601,UBERON:0010316
 |fonse_cell_line=FF:10637-108I7
 |fonse_cell_line_closure=FF:10637-108I7
@@ Line 35: / Line 41: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/neuroectodermal%2520tumor%2520cell%2520line%253aFU-RPNT-1.CNhs11744.10637-108I7.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/neuroectodermal%2520tumor%2520cell%2520line%253aFU-RPNT-1.CNhs11744.10637-108I7.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/neuroectodermal%2520tumor%2520cell%2520line%253aFU-RPNT-1.CNhs11744.10637-108I7.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/neuroectodermal%2520tumor%2520cell%2520line%253aFU-RPNT-1.CNhs11744.10637-108I7.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/neuroectodermal%2520tumor%2520cell%2520line%253aFU-RPNT-1.CNhs11744.10637-108I7.hg38.nobarcode.ctss.bed.gz
 |id=FF:10637-108I7
 |is_a=DOID:171;;EFO:0002091;;FF:0000003;;FF:0000210;;UBERON:0002346
+|is_obsolete=
+|library_id=CNhs11744
+|library_id_phase_based=2:CNhs11744
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10637
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10637
 |name=neuroectodermal tumor cell line:FU-RPNT-1
 |namespace=FANTOM5
@@ Line 42: / Line 60: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs11744,LSID819,release009,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
+|refex=http://refex.dbcls.jp/genelist.php?lang
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 |rna_box=108
 |rna_catalog_number=
@@ Line 57: / Line 78: @@
 |rna_weight_ug=105.55275
 |sample_age=22
+|sample_category=cell lines
 |sample_cell_catalog=RCB1495
 |sample_cell_line=FU-RPNT-1
@@ Line 77: / Line 99: @@
 |sample_tissue=kidney
 |top_motifs=NKX6-1,2:3.2117414314;IKZF2:3.16310049102;PAX4:3.02241855323;TOPORS:2.98680204351;CDX1,2,4:2.84866469587;ZBTB16:2.68426571475;FOXD3:2.57939425937;PITX1..3:2.35544591017;POU1F1:2.2946527155;FOXP1:2.20852644902;AIRE:2.15658008838;POU6F1:2.12312647667;AHR_ARNT_ARNT2:1.96977349162;ALX1:1.91033282309;PRDM1:1.86313606459;TEF:1.85532534178;NRF1:1.78788629145;CDC5L:1.65126949963;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.63001132501;FOXM1:1.62521691373;POU3F1..4:1.61957373348;YY1:1.57728739344;BPTF:1.52007532672;BREu{core}:1.47967031619;DBP:1.46568071778;NKX3-1:1.4391506165;ZNF143:1.3920310495;CUX2:1.38851482001;GATA4:1.37983978822;ZNF384:1.35716143038;LHX3,4:1.27882681945;NKX2-3_NKX2-5:1.26704957657;RREB1:1.26494055291;PAX6:1.26289479742;PRRX1,2:1.25654889184;ZFP161:1.23355955952;HOX{A6,A7,B6,B7}:1.19539795513;ATF5_CREB3:1.17786294561;MZF1:1.14075936504;E2F1..5:1.12881877581;HOX{A5,B5}:1.11778514265;SOX5:1.0829503404;OCT4_SOX2{dimer}:1.06297303726;STAT1,3:1.02085057685;ONECUT1,2:1.01674501713;ARID5B:1.01265193867;PATZ1:0.972524354152;GFI1:0.949008389167;POU5F1:0.895582347461;PBX1:0.888216314559;STAT5{A,B}:0.875477331014;RFX1:0.87430472425;NKX2-1,4:0.865578429994;EVI1:0.860694635705;PAX8:0.841858070978;ELK1,4_GABP{A,B1}:0.811064427972;ATF6:0.773605300001;POU2F1..3:0.764303157064;NANOG{mouse}:0.76267294924;FOXN1:0.748733943895;SOX{8,9,10}:0.747648932992;EGR1..3:0.732448001436;HBP1_HMGB_SSRP1_UBTF:0.71412096103;PAX3,7:0.711417635607;RBPJ:0.68706853024;UFEwm:0.685291895262;SOX17:0.672172621052;RFX2..5_RFXANK_RFXAP:0.642436093783;FOXL1:0.631196326422;KLF4:0.607334094389;ATF4:0.603547770947;SOX2:0.602561826611;FOXQ1:0.600260599108;DMAP1_NCOR{1,2}_SMARC:0.583201036821;GFI1B:0.547341925674;TFDP1:0.535601115347;GTF2I:0.468887648819;ALX4:0.437648863746;NFY{A,B,C}:0.436812223766;HOX{A4,D4}:0.409626980158;MAZ:0.389896156763;CREB1:0.389874698481;PDX1:0.383368542295;REST:0.361292757666;T:0.291504523967;FOX{D1,D2}:0.276417065033;FOX{I1,J2}:0.272952780393;GZF1:0.260288145977;HOXA9_MEIS1:0.238054201985;MEF2{A,B,C,D}:0.205866312431;ZIC1..3:0.196808258439;EN1,2:0.190332507887;NANOG:0.16119875593;HMGA1,2:0.147336836378;ADNP_IRX_SIX_ZHX:0.123866100935;ZBTB6:0.0872588931267;MTE{core}:0.032522941174;TAL1_TCF{3,4,12}:0.0189271376356;MYB:0.0167542556532;MYFfamily:-0.00830716633472;GTF2A1,2:-0.0265875794736;RORA:-0.0309548515215;NR6A1:-0.043032023887;MED-1{core}:-0.0645408099156;LEF1_TCF7_TCF7L1,2:-0.121078769203;bHLH_family:-0.141865024534;FOXA2:-0.150563614363;CRX:-0.166819122931;MYBL2:-0.194189634232;SREBF1,2:-0.249012001207;RXR{A,B,G}:-0.251131031644;HMX1:-0.25241335626;FOXP3:-0.254293040134;RUNX1..3:-0.27790784571;TFAP2B:-0.301715366575;PAX2:-0.308191870634;PAX5:-0.309061127456;NHLH1,2:-0.374477862479;JUN:-0.379914955723;TEAD1:-0.380393564904;TLX1..3_NFIC{dimer}:-0.381107220515;SPIB:-0.383550334241;FOXO1,3,4:-0.388687012083;HNF4A_NR2F1,2:-0.395521356721;PAX1,9:-0.411217027759;HNF1A:-0.412881625713;TLX2:-0.421724696887;ZNF423:-0.46433313292;ZNF238:-0.550040497714;XBP1:-0.558767733625;NR1H4:-0.56590200069;IRF1,2:-0.571577051791;NFKB1_REL_RELA:-0.605357767607;SNAI1..3:-0.620196906071;ELF1,2,4:-0.624272744071;NFE2L1:-0.62825035249;GATA6:-0.637595446775;AR:-0.652701081771;MTF1:-0.658449454352;SPI1:-0.662859063606;HIC1:-0.675569623998;ATF2:-0.693050761035;NR3C1:-0.699200601841;CEBPA,B_DDIT3:-0.715886903018;HSF1,2:-0.756911966705;TGIF1:-0.789315448618;NFATC1..3:-0.844192516525;LMO2:-0.849855356259;ZEB1:-0.885313185105;EP300:-0.893445910595;TBP:-0.897496562515;HLF:-0.919875401302;IKZF1:-0.950162727877;GCM1,2:-0.950456733439;NFIL3:-0.950648214695;FOS_FOS{B,L1}_JUN{B,D}:-0.95694705843;NFE2:-0.978863495178;HIF1A:-1.02570857932;TP53:-1.02571983516;NKX3-2:-1.02620438596;FOX{F1,F2,J1}:-1.02928882755;FOSL2:-1.03103100544;ETS1,2:-1.04833153206;NFIX:-1.05610760626;GLI1..3:-1.05769991395;SPZ1:-1.06117324807;BACH2:-1.07777214816;SRF:-1.08187340733;SP1:-1.10293119802;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.1215243404;IRF7:-1.1673377492;HAND1,2:-1.24765038316;NFE2L2:-1.27884941196;XCPE1{core}:-1.2852257834;TFAP2{A,C}:-1.29678778017;NR5A1,2:-1.33411831625;STAT2,4,6:-1.43201951077;NKX2-2,8:-1.45278942757;EBF1:-1.45530073578;SMAD1..7,9:-1.47883299322;MAFB:-1.55484978281;MYOD1:-1.70168503917;RXRA_VDR{dimer}:-1.85006631977;TFAP4:-1.85198804639;HES1:-1.95264498618;TBX4,5:-2.01037339945;ESR1:-2.03513756423;VSX1,2:-2.13531230176;ESRRA:-2.51314983406;ZNF148:-2.61095019281;PPARG:-2.99969170461;TFCP2:-3.01367767276
+|xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10637-108I7;search_select_hide=table117:FF:10637-108I7
 }}

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FF:10637-108I7: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 14:32, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0