FF:10442-106F1: Difference between revisions
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{{f5samples | {{f5samples | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON: | |CNhs11245= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003 | |DRA_sample_Accession=CAGE@SAMD00005495 | ||
|HumanCAGEScanFiles=NCig10058;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/schwannoma%2520cell%2520line%253aHS-PSS.NCig10058.10442-106F1.hg19.GCTATA.3prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/schwannoma%2520cell%2520line%253aHS-PSS.NCig10058.10442-106F1.hg19.GCTATA.5prime.fq.gz;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/schwannoma%2520cell%2520line%253aHS-PSS.NCig10058.10442-106F1.hg19.GCTATA.bam;http://fantom.gsc.riken.jp/5/datafiles/phase2.3/basic/human.cell_line.CAGEScan/schwannoma%2520cell%2520line%253aHS-PSS.NCig10058.10442-106F1.hg19.GCTATA.pairs.bed.gz | |||
|accession_numbers=CAGE;DRX007996;DRR008868;DRZ000293;DRZ001678;DRZ011643;DRZ013028!CAGE;DRX007997;DRR008869;DRZ000294;DRZ001679;DRZ011644;DRZ013029 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0004121,UBERON:0011216,UBERON:0000061,UBERON:0000465,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0000010,UBERON:0001016 | |||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0002371,CL:0002319,CL:0000095,CL:0000243,CL:0002573,CL:0000125,CL:0000255 | |||
|ancestors_in_disease_facet=DOID:4,DOID:14566 | |ancestors_in_disease_facet=DOID:4,DOID:14566 | ||
|ancestors_in_ff_facet=FF:0000102,FF:0000003,FF:0000210,FF:0000101,FF:0000001,FF:0103225 | |||
|comment= | |comment= | ||
|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|data_phase=2 | |||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr1:158985493..158985535,+!p4@IFI16!2.13!201.10!IFI16;;chr12:66218598..66218645,+!p2@HMGA2!1.81!282.31!HMGA2;;chr12:66218255..66218304,+!p3@HMGA2!1.70!126.71!HMGA2;;chr2:102091144..102091183,-!p2@RFX8!1.60!38.52!RFX8;;chr12:66218836..66218888,+!p1@HMGA2!1.57!321.60!HMGA2;;chr2:102091566..102091581,-!p1@RFX8!1.50!30.93!RFX8;;chr1:158985469..158985489,+!p7@IFI16!1.45!31.96!IFI16;;chr17:46688334..46688385,-!p1@HOXB7!1.38!33.32!HOXB7;;chr12:66218183..66218209,+!p4@HMGA2!1.33!38.26!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!1.31!28.38!HMGA2;;chr1:170632285..170632309,+!p1@PRRX1!1.31!21.73!PRRX1;;chr12:66218573..66218596,+!p7@HMGA2!1.29!27.27!HMGA2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.29!18.49!HOXC5;;chr1:170633348..170633399,+!p2@PRRX1!1.25!22.58!PRRX1;;chr7:27192185..27192209,-!p1@HOXA3!1.25!16.62!HOXA3;;chr12:66218003..66218018,+!p9@HMGA2!1.24!19.68!HMGA2;;chr7:27196267..27196311,-!p1@HOXA7!1.24!16.53!HOXA7;;chr4:81118647..81118666,+!p1@PRDM8!1.23!21.05!PRDM8;;chr12:66218378..66218401,+!p6@HMGA2!1.16!20.79!HMGA2;;chr3:141121847..141121868,+!p5@ZBTB38!1.13!19.00!ZBTB38;;chr7:27205136..27205164,-!p1@HOXA9!1.13!12.53!HOXA9;;chr12:66218904..66218913,+!p11@HMGA2!1.13!12.44!HMGA2;;chrY:21906594..21906622,-!p1@KDM5D!1.13!12.44!KDM5D;;chr17:46703687..46703740,-!p1@HOXB9!1.11!11.84!HOXB9;;chr17:46682321..46682362,-!p1@HOXB6!1.11!11.76!HOXB6;;chr1:158979872..158979898,+!p3@IFI16!1.10!35.96!IFI16;;chr1:170632439..170632465,+!p11@PRRX1!1.10!11.50!PRRX1;;chr7:27205106..27205134,-!p2@HOXA9!1.09!11.16!HOXA9;;chr3:181429741..181429767,+!p2@SOX2!1.09!11.16!SOX2;;chr6:85473156..85473210,-!p2@TBX18!1.08!13.55!TBX18;;chr14:29235961..29236008,+!p1@FOXG1!1.08!11.08!FOXG1;;chr10:94449703..94449718,+!p1@HHEX!1.07!41.67!HHEX;;chr12:54393880..54393962,+!p1@HOXC9!1.07!10.65!HOXC9;;chr12:66357214..66357233,+!p13@HMGA2!1.06!10.48!HMGA2;;chr15:57511609..57511651,+!p2@TCF12!1.05!17.38!TCF12;;chr6:45296048..45296082,+!p1@RUNX2!1.05!11.76!RUNX2;;chr1:158985457..158985468,+!p12@IFI16!1.05!10.14!IFI16;;chr3:181429704..181429722,+!p1@SOX2!1.05!10.14!SOX2;;chr1:170632723..170632739,+!p8@PRRX1!1.04!10.06!PRRX1;;chr4:4861385..4861398,+!p1@MSX1!1.03!29.14!MSX1;;chr2:223163706..223163730,-!p1@PAX3!1.03!9.71!PAX3;;chr7:35293685..35293718,-!p1@TBX20!1.03!9.63!TBX20;;chr1:170633262..170633285,+!p3@PRRX1!1.02!10.82!PRRX1;;chr12:66218923..66218934,+!p14@HMGA2!1.02!9.54!HMGA2;;chr5:72744594..72744609,-!p1@FOXD1!1.01!43.20!FOXD1;;chr12:85673977..85674015,+!p1@ALX1!1.01!9.20!ALX1;;chr11:65667846..65667868,-!p1@FOSL1!1.00!240.81!FOSL1;;chr7:14029283..14029311,-!p1@ETV1!1.00!48.49!ETV1;;chr15:83953397..83953425,-!p1@BNC1!1.00!10.40!BNC1;;chr17:46622440..46622477,-!p5@HOXB2!1.00!10.06!HOXB2;;chr1:170632115..170632136,+!p9@PRRX1!1.00!8.95!PRRX1;;chr5:72744445..72744466,-!p2@FOXD1!0.98!14.32!FOXD1;;chr12:66218443..66218461,+!p8@HMGA2!0.98!10.99!HMGA2;;chr1:158985553..158985574,+!p14@IFI16!0.98!8.52!IFI16;;chr9:126774018..126774055,+!p1@LHX2!0.97!8.44!LHX2;;chr7:19157248..19157268,-!p1@TWIST1!0.95!22.33!TWIST1;;chr3:168864315..168864339,-!p2@MECOM!0.94!12.95!MECOM;;chr7:27224842..27224872,-!p1@HOXA11!0.94!7.75!HOXA11;;chr1:170632477..170632506,+!p6@PRRX1!0.94!7.75!PRRX1;;chr12:26277956..26277980,-!p1@BHLHE41!0.93!28.21!BHLHE41;;chr12:54447599..54447630,+!p3@HOXC4!0.93!9.37!HOXC4;;chr1:170632959..170632987,+!p4@PRRX1!0.93!8.35!PRRX1;;chr2:74741569..74741620,+!p1@TLX2!0.91!7.16!TLX2;;chr3:138665937..138665968,-!p1@FOXL2!0.91!7.07!FOXL2;;chr2:239756671..239756732,+!p1@TWIST2!0.90!23.01!TWIST2;;chr2:239756739..239756755,+!p2@TWIST2!0.90!12.19!TWIST2;;chr1:158979792..158979814,+!p2@IFI16!0.89!67.32!IFI16;;chr19:20188776..20188826,+!p1@ZNF90!0.89!18.75!ZNF90;;chr13:79177674..79177701,-!p1@POU4F1!0.89!6.82!POU4F1;;chr6:34204672..34204692,+!p1@HMGA1!0.88!789.42!HMGA1;;chr6:34204921..34204939,+!p3@HMGA1!0.88!209.11!HMGA1;;chr7:19157043..19157088,-!p2@TWIST1!0.88!17.04!TWIST1;;chr3:141105705..141105770,+!p4@ZBTB38!0.88!8.10!ZBTB38;;chr2:102091590..102091601,-!p5@RFX8!0.88!6.65!RFX8;;chr3:37217736..37217753,-!p2@LRRFIP2!0.87!28.46!LRRFIP2;;chr12:66218152..66218174,+!p10@HMGA2!0.87!6.90!HMGA2;;chr12:66358080..66358094,+!p15@HMGA2!0.87!6.48!HMGA2;;chr1:170632250..170632277,+!p7@PRRX1!0.86!6.31!PRRX1;;chr11:65667884..65667895,-!p2@FOSL1!0.85!24.97!FOSL1;;chr1:158985536..158985545,+!p18@IFI16!0.85!6.05!IFI16;;chr8:49833948..49833973,-!p2@SNAI2!0.83!39.54!SNAI2;;chrX:101975643..101975683,+!p1@BHLHB9!0.83!13.46!BHLHB9;;chr2:200322654..200322707,-!p2@SATB2!0.83!8.69!SATB2;;chr3:147127142..147127168,+!p1@ZIC1!0.82!5.62!ZIC1;;chr1:170632137..170632172,+!p10@PRRX1!0.82!5.62!PRRX1;;chr10:94449675..94449694,+!p2@HHEX!0.81!15.68!HHEX;;chr7:27135591..27135658,-!p1@HOXA1!0.80!10.65!HOXA1;;chr1:170632683..170632696,+!p12@PRRX1!0.80!5.37!PRRX1;;chr2:176994408..176994492,+!p1@HOXD8!0.80!5.37!HOXD8;;chr3:141121820..141121838,+!p9@ZBTB38!0.80!5.37!ZBTB38;;chr2:102091478..102091490,-!p3@RFX8!0.80!5.28!RFX8;;chr3:185826764..185826803,-!p2@ETV5!0.7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| |expression_enrichment_score=chr1:158985493..158985535,+!p4@IFI16!2.13!201.10!IFI16;;chr12:66218598..66218645,+!p2@HMGA2!1.81!282.31!HMGA2;;chr12:66218255..66218304,+!p3@HMGA2!1.70!126.71!HMGA2;;chr2:102091144..102091183,-!p2@RFX8!1.60!38.52!RFX8;;chr12:66218836..66218888,+!p1@HMGA2!1.57!321.60!HMGA2;;chr2:102091566..102091581,-!p1@RFX8!1.50!30.93!RFX8;;chr1:158985469..158985489,+!p7@IFI16!1.45!31.96!IFI16;;chr17:46688334..46688385,-!p1@HOXB7!1.38!33.32!HOXB7;;chr12:66218183..66218209,+!p4@HMGA2!1.33!38.26!HMGA2;;chr12:66218212..66218244,+!p5@HMGA2!1.31!28.38!HMGA2;;chr1:170632285..170632309,+!p1@PRRX1!1.31!21.73!PRRX1;;chr12:66218573..66218596,+!p7@HMGA2!1.29!27.27!HMGA2;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.29!18.49!HOXC5;;chr1:170633348..170633399,+!p2@PRRX1!1.25!22.58!PRRX1;;chr7:27192185..27192209,-!p1@HOXA3!1.25!16.62!HOXA3;;chr12:66218003..66218018,+!p9@HMGA2!1.24!19.68!HMGA2;;chr7:27196267..27196311,-!p1@HOXA7!1.24!16.53!HOXA7;;chr4:81118647..81118666,+!p1@PRDM8!1.23!21.05!PRDM8;;chr12:66218378..66218401,+!p6@HMGA2!1.16!20.79!HMGA2;;chr3:141121847..141121868,+!p5@ZBTB38!1.13!19.00!ZBTB38;;chr7:27205136..27205164,-!p1@HOXA9!1.13!12.53!HOXA9;;chr12:66218904..66218913,+!p11@HMGA2!1.13!12.44!HMGA2;;chrY:21906594..21906622,-!p1@KDM5D!1.13!12.44!KDM5D;;chr17:46703687..46703740,-!p1@HOXB9!1.11!11.84!HOXB9;;chr17:46682321..46682362,-!p1@HOXB6!1.11!11.76!HOXB6;;chr1:158979872..158979898,+!p3@IFI16!1.10!35.96!IFI16;;chr1:170632439..170632465,+!p11@PRRX1!1.10!11.50!PRRX1;;chr7:27205106..27205134,-!p2@HOXA9!1.09!11.16!HOXA9;;chr3:181429741..181429767,+!p2@SOX2!1.09!11.16!SOX2;;chr6:85473156..85473210,-!p2@TBX18!1.08!13.55!TBX18;;chr14:29235961..29236008,+!p1@FOXG1!1.08!11.08!FOXG1;;chr10:94449703..94449718,+!p1@HHEX!1.07!41.67!HHEX;;chr12:54393880..54393962,+!p1@HOXC9!1.07!10.65!HOXC9;;chr12:66357214..66357233,+!p13@HMGA2!1.06!10.48!HMGA2;;chr15:57511609..57511651,+!p2@TCF12!1.05!17.38!TCF12;;chr6:45296048..45296082,+!p1@RUNX2!1.05!11.76!RUNX2;;chr1:158985457..158985468,+!p12@IFI16!1.05!10.14!IFI16;;chr3:181429704..181429722,+!p1@SOX2!1.05!10.14!SOX2;;chr1:170632723..170632739,+!p8@PRRX1!1.04!10.06!PRRX1;;chr4:4861385..4861398,+!p1@MSX1!1.03!29.14!MSX1;;chr2:223163706..223163730,-!p1@PAX3!1.03!9.71!PAX3;;chr7:35293685..35293718,-!p1@TBX20!1.03!9.63!TBX20;;chr1:170633262..170633285,+!p3@PRRX1!1.02!10.82!PRRX1;;chr12:66218923..66218934,+!p14@HMGA2!1.02!9.54!HMGA2;;chr5:72744594..72744609,-!p1@FOXD1!1.01!43.20!FOXD1;;chr12:85673977..85674015,+!p1@ALX1!1.01!9.20!ALX1;;chr11:65667846..65667868,-!p1@FOSL1!1.00!240.81!FOSL1;;chr7:14029283..14029311,-!p1@ETV1!1.00!48.49!ETV1;;chr15:83953397..83953425,-!p1@BNC1!1.00!10.40!BNC1;;chr17:46622440..46622477,-!p5@HOXB2!1.00!10.06!HOXB2;;chr1:170632115..170632136,+!p9@PRRX1!1.00!8.95!PRRX1;;chr5:72744445..72744466,-!p2@FOXD1!0.98!14.32!FOXD1;;chr12:66218443..66218461,+!p8@HMGA2!0.98!10.99!HMGA2;;chr1:158985553..158985574,+!p14@IFI16!0.98!8.52!IFI16;;chr9:126774018..126774055,+!p1@LHX2!0.97!8.44!LHX2;;chr7:19157248..19157268,-!p1@TWIST1!0.95!22.33!TWIST1;;chr3:168864315..168864339,-!p2@MECOM!0.94!12.95!MECOM;;chr7:27224842..27224872,-!p1@HOXA11!0.94!7.75!HOXA11;;chr1:170632477..170632506,+!p6@PRRX1!0.94!7.75!PRRX1;;chr12:26277956..26277980,-!p1@BHLHE41!0.93!28.21!BHLHE41;;chr12:54447599..54447630,+!p3@HOXC4!0.93!9.37!HOXC4;;chr1:170632959..170632987,+!p4@PRRX1!0.93!8.35!PRRX1;;chr2:74741569..74741620,+!p1@TLX2!0.91!7.16!TLX2;;chr3:138665937..138665968,-!p1@FOXL2!0.91!7.07!FOXL2;;chr2:239756671..239756732,+!p1@TWIST2!0.90!23.01!TWIST2;;chr2:239756739..239756755,+!p2@TWIST2!0.90!12.19!TWIST2;;chr1:158979792..158979814,+!p2@IFI16!0.89!67.32!IFI16;;chr19:20188776..20188826,+!p1@ZNF90!0.89!18.75!ZNF90;;chr13:79177674..79177701,-!p1@POU4F1!0.89!6.82!POU4F1;;chr6:34204672..34204692,+!p1@HMGA1!0.88!789.42!HMGA1;;chr6:34204921..34204939,+!p3@HMGA1!0.88!209.11!HMGA1;;chr7:19157043..19157088,-!p2@TWIST1!0.88!17.04!TWIST1;;chr3:141105705..141105770,+!p4@ZBTB38!0.88!8.10!ZBTB38;;chr2:102091590..102091601,-!p5@RFX8!0.88!6.65!RFX8;;chr3:37217736..37217753,-!p2@LRRFIP2!0.87!28.46!LRRFIP2;;chr12:66218152..66218174,+!p10@HMGA2!0.87!6.90!HMGA2;;chr12:66358080..66358094,+!p15@HMGA2!0.87!6.48!HMGA2;;chr1:170632250..170632277,+!p7@PRRX1!0.86!6.31!PRRX1;;chr11:65667884..65667895,-!p2@FOSL1!0.85!24.97!FOSL1;;chr1:158985536..158985545,+!p18@IFI16!0.85!6.05!IFI16;;chr8:49833948..49833973,-!p2@SNAI2!0.83!39.54!SNAI2;;chrX:101975643..101975683,+!p1@BHLHB9!0.83!13.46!BHLHB9;;chr2:200322654..200322707,-!p2@SATB2!0.83!8.69!SATB2;;chr3:147127142..147127168,+!p1@ZIC1!0.82!5.62!ZIC1;;chr1:170632137..170632172,+!p10@PRRX1!0.82!5.62!PRRX1;;chr10:94449675..94449694,+!p2@HHEX!0.81!15.68!HHEX;;chr7:27135591..27135658,-!p1@HOXA1!0.80!10.65!HOXA1;;chr1:170632683..170632696,+!p12@PRRX1!0.80!5.37!PRRX1;;chr2:176994408..176994492,+!p1@HOXD8!0.80!5.37!HOXD8;;chr3:141121820..141121838,+!p9@ZBTB38!0.80!5.37!ZBTB38;;chr2:102091478..102091490,-!p3@RFX8!0.80!5.28!RFX8;;chr3:185826764..185826803,-!p2@ETV5!0.79!20.79!ETV5;;chr17:46655704..46655718,-!p2@HOXB4!0.79!8.10!HOXB4;;chr17:46675420..46675465,-!p3@HOXB6!0.79!5.96!HOXB6;;chr12:66218420..66218439,+!p12@HMGA2!0.79!5.20!HMGA2;;chr13:79177703..79177729,-!p2@POU4F1!0.79!5.20!POU4F1;;chr9:16705069..16705086,-!p3@BNC2!0.79!5.11!BNC2;;chr10:31288398..31288455,-!p2@ZNF438!0.78!5.88!ZNF438;;chr11:31832658..31832681,-!p1@PAX6!0.77!4.94!PAX6;;chr7:27196217..27196246,-!p2@HOXA7!0.77!4.94!HOXA7;;chr3:147111198..147111225,+!p4@ZIC1!0.77!4.94!ZIC1;;chr12:66218469..66218477,+!p16@HMGA2!0.77!4.86!HMGA2;;chr2:101436564..101436647,+!p1@NPAS2!0.76!106.60!NPAS2;;chr1:158979851..158979865,+!p5@IFI16!0.76!11.16!IFI16;;chr9:132427972..132428056,+!p1@PRRX2!0.76!6.48!PRRX2;;chr19:22235279..22235301,+!p1@ZNF257!0.75!9.20!ZNF257;;chr12:54402745..54402788,+!p1@HOXC8!0.75!4.69!HOXC8;;chrY:2803415..2803468,+!p1@ZFY!0.75!4.69!ZFY;;chr15:42749722..42749739,-!p2@ZFP106!0.74!8.52!ZFP106;;chr3:138665969..138665993,-!p2@FOXL2!0.74!4.52!FOXL2;;chr5:178368186..178368238,+!p1@ZNF454!0.73!8.35!ZNF454;;chr12:26277929..26277955,-!p3@BHLHE41!0.73!6.56!BHLHE41;;chr3:168865194..168865245,-!p3@MECOM!0.73!5.79!MECOM;;chr3:157823517..157823562,-!p1@SHOX2!0.73!4.69!SHOX2;;chr16:67198633..67198671,+!p1@HSF4!0.73!4.35!HSF4;;chr17:46692457..46692484,-!p2@HOXB8!0.72!4.26!HOXB8;;chr2:102091514..102091528,-!p6@RFX8!0.72!4.26!RFX8;;chr2:172949484..172949522,+!p1@DLX1!0.72!4.26!DLX1;;chr13:36871902..36872023,-!p1@CCDC169-SOHLH2,p1@CCDC169,p1@SOHLH2!0.71!9.63!SOHLH2;;chr15:96875657..96875760,+!p14@NR2F2!0.71!7.16!NR2F2;;chr16:67198683..67198698,+!p2@HSF4!0.71!4.18!HSF4;;chr17:46691732..46691766,-!p4@HOXB8!0.71!4.18!HOXB8;;chr7:63505799..63505904,+!p1@ZNF727!0.71!4.09!ZNF727;;chr12:57914286..57914304,-!p1@DDIT3!0.70!166.17!DDIT3;;chr2:172967621..172967637,-!p1@DLX2!0.70!11.84!DLX2;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.69!3.92!HOXC5;;chr17:46688310..46688323,-!p4@HOXB7!0.69!3.92!HOXB7;;chr3:141150883..141150961,+!p6@ZBTB38!0.68!3.83!ZBTB38;;chr7:27195867..27195893,-!p3@HOXA7!0.68!3.75!HOXA7;;chr7:27213893..27213954,-!p1@HOXA10!0.68!3.75!HOXA10;;chr1:119530493..119530572,-!p1@TBX15!0.68!3.75!TBX15;;chr12:10870927..10870966,-!p5@CSDA!0.68!3.75!CSDA;;chr14:61116183..61116208,-!p1@SIX1!0.67!15.85!SIX1;;chr2:113993052..113993097,-!p2@PAX8!0.67!9.20!PAX8;;chr3:185826814..185826825,-!p3@ETV5!0.67!7.24!ETV5;;chr14:29236269..29236285,+!p3@FOXG1!0.67!3.66!FOXG1;;chr8:23564065..23564087,-!p1@NKX2-6!0.67!3.66!NKX2-6;;chr17:46806067..46806097,-!p1@HOXB13!0.67!3.66!HOXB13;;chr6:45390025..45390076,+!p2@RUNX2!0.66!9.46!RUNX2;;chr20:45142154..45142227,-!p1@ZNF334!0.66!7.75!ZNF334;;chr14:37131058..37131139,+!p1@PAX9!0.66!3.58!PAX9;;chr3:147111231..147111281,+!p3@ZIC1!0.66!3.58!ZIC1;;chr4:26323870..26323885,+!p13@RBPJ!0.66!3.58!RBPJ;;chr9:132427883..132427951,+!p2@PRRX2!0.66!3.58!PRRX2;;chr17:46675558..46675577,-!p2@HOXB6!0.66!3.58!HOXB6;;chr17:46622114..46622138,-!p4@HOXB2!0.65!5.62!HOXB2;;chr17:46703528..46703549,-!p5@HOXB9!0.65!3.49!HOXB9;;chr10:35484804..35484902,+!p2@CREM!0.64!14.74!CREM;;chr7:113726357..113726443,+!p1@FOXP2!0.64!6.22!FOXP2;;chr17:46622229..46622257,-!p6@HOXB2!0.64!4.09!HOXB2;;chr3:25470156..25470227,+!p2@RARB!0.64!3.41!RARB;;chr3:147110055..147110129,-!p1@ZIC4!0.64!3.32!ZIC4;;chr15:83953373..83953386,-!p2@BNC1!0.64!3.32!BNC1;;chr7:27205175..27205184,-!p3@HOXA9!0.64!3.32!HOXA9;;chr8:49833978..49833996,-!p1@SNAI2!0.63!80.27!SNAI2;;chr2:208394817..208394834,+!p3@CREB1!0.63!15.17!CREB1;;chr19:16435625..16435682,+!p1@KLF2!0.62!121.68!KLF2;;chrX:101975619..101975641,+!p2@BHLHB9!0.62!6.22!BHLHB9;;chr7:27183291..27183324,-!p1@HOXA5!0.62!3.15!HOXA5;;chr6:34205372..34205412,+!p5@HMGA1!0.60!17.89!HMGA1;;chr12:10875351..10875422,-!p4@CSDA!0.60!6.48!CSDA;;chr12:80085255..80085284,-!p9@PAWR!0.60!4.60!PAWR;;chr17:46622205..46622218,-!p3@HOXB2!0.60!3.58!HOXB2;;chr7:14028488..14028516,-!p2@ETV1!0.60!3.41!ETV1;;chr5:137801160..137801176,+!p1@EGR1!0.59!353.38!EGR1;;chr12:50478977..50479040,+!p1@SMARCD1!0.59!77.89!SMARCD1;;chr4:26322267..26322334,+!p3@RBPJ!0.59!7.92!RBPJ;;chr17:46687959..46688007,-!p2@HOXB7!0.59!4.26!HOXB7;;chr12:26277817..26277863,-!p2@BHLHE41!0.59!4.18!BHLHE41;;chr12:77459306..77459365,-!p1@E2F7!0.58!43.03!E2F7;;chr5:137804484..137804498,+!p2@EGR1!0.58!13.29!EGR1;;chr1:43148792..43148849,+!p2@YBX1!0.58!12.70!YBX1;;chr16:4323015..4323067,-!p2@TFAP4!0.58!8.95!TFAP4;;chr19:38042240..38042309,+!p2@ZNF540!0.58!4.69!ZNF540;;chr1:170633058..170633084,+!p5@PRRX1!0.58!2.81!PRRX1;;chr17:35767301..35767344,+!p2@TADA2A!0.57!7.58!TADA2A;;chr4:206390..206444,+!p1@ZNF876P!0.57!5.37!ZNF876P;;chr2:100721328..100721348,-!p4@AFF3!0.57!2.73!AFF3;;chr2:172950227..172950249,+!p2@DLX1!0.57!2.73!DLX1;;chr17:46703942..46703964,-!p4@HOXB9!0.57!2.73!HOXB9;;chr3:37217756..37217844,-!p1@LRRFIP2!0.56!211.84!LRRFIP2;;chr7:4815238..4815327,+!p1@KIAA0415!0.56!73.03!AP5Z1;;chr17:46655730..46655791,-!p1@HOXB4!0.56!7.58!HOXB4;;chr5:132299572..132299623,-!p6@AFF4!0.56!5.28!AFF4;;chr4:81104895..81104920,+!p2@PRDM8!0.56!4.35!PRDM8;;c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| ||
|ffid_belonging_in_development=CL:0000133,CL:0000339,CL:0000221 | |||
|fonse_cell_line=FF:0103225 | |fonse_cell_line=FF:0103225 | ||
|fonse_cell_line_closure=FF:0103225 | |fonse_cell_line_closure=FF:0103225 | ||
| Line 35: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/schwannoma%2520cell%2520line%253aHS-PSS%252c%2520tech_rep2.CNhs11245.10442-106F1.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/schwannoma%2520cell%2520line%253aHS-PSS%252c%2520tech_rep2.CNhs11245.10442-106F1.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/schwannoma%2520cell%2520line%253aHS-PSS%252c%2520tech_rep2.CNhs11245.10442-106F1.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/schwannoma%2520cell%2520line%253aHS-PSS%252c%2520tech_rep2.CNhs11245.10442-106F1.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/schwannoma%2520cell%2520line%253aHS-PSS%252c%2520tech_rep2.CNhs11245.10442-106F1.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10442-106F1 | |id=FF:10442-106F1 | ||
|is_a=EFO:0002091;;FF: | |is_a=EFO:0002091;;FF:0000210;;FF:0103225 | ||
|is_obsolete= | |||
|library_id=CNhs11245!CNhs11183 | |||
|library_id_phase_based=2:CNhs11245 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10442 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10442 | |||
|name=schwannoma cell line:HS-PSS | |name=schwannoma cell line:HS-PSS | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
| Line 42: | Line 62: | ||
|profile_cagescan=NCig10058,,, | |profile_cagescan=NCig10058,,, | ||
|profile_hcage=CNhs11245 & CNhs11183,LSID757,release008,COMPLETED | |profile_hcage=CNhs11245 & CNhs11183,LSID757,release008,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
|repeat_enrich_byfamily=0,0,0,0.0355151496094428,0,0,0,-0.00617809266266381,0,-0.277362132193514,-0.282403560576942,0,0,0,0,0,0,0,0,0,0,0,0,0,-0.153323010348428,0,0.360520539577179,0,0.701438524079415,0,-0.0979578962680575,0,0,-0.0974414401694194,0,0,0,0,0,0,0,0,0,0,0.225750393390708,0,-0.202955559028396,0,0,0,0.0355151496094428,0,0,0,0,0.109621186588903,0,0,0,0.0355151496094428,0,-0.035239724823705,0.0683442610773682,-0.0969923612426051,0,0,-0.0618284776036541,0,0,0,0,0,0,0,0,0.0683442610773682,0,0,0,0,0,0,0,0,0,0.0341721305386841,0,0.0127242265722793,0,0,0,0.00671010717542497,0,0,0,-0.0584468268118252,0.00177075372408485,0,0,0.0177575748047214,0.0355151496094428,0.0293460172815869,-0.0890445926201497,0,0,0,0.0355151496094428,0,0,0,0,0,0,0.140760652971507,0,0,0,0,0,0,0.055220188583997,0,0,0,-0.153368255746384,-0.473354777558724,0,0,0,0,0,0 | |||
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| |||
|rna_box=106 | |rna_box=106 | ||
|rna_catalog_number= | |rna_catalog_number= | ||
| Line 57: | Line 80: | ||
|rna_weight_ug=56.82825 | |rna_weight_ug=56.82825 | ||
|sample_age=unknown | |sample_age=unknown | ||
|sample_category=cell lines | |||
|sample_cell_catalog=RCB2362 | |sample_cell_catalog=RCB2362 | ||
|sample_cell_line=HS-PSS | |sample_cell_line=HS-PSS | ||
| Line 69: | Line 93: | ||
|sample_ethnicity=unknown | |sample_ethnicity=unknown | ||
|sample_experimental_condition= | |sample_experimental_condition= | ||
| | |||
|sample_id=10442 | |sample_id=10442 | ||
|sample_note= | |sample_note= | ||
| Line 77: | Line 101: | ||
|sample_tissue=peripheral nervous system | |sample_tissue=peripheral nervous system | ||
|top_motifs=ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.77507560552;SREBF1,2:2.19604267948;bHLH_family:1.75666960827;HBP1_HMGB_SSRP1_UBTF:1.58961406753;HOX{A4,D4}:1.35667021558;EN1,2:1.25359518353;ALX1:1.14383553117;RXR{A,B,G}:1.10519107256;NKX2-2,8:1.01458964918;HIF1A:0.958256254769;AHR_ARNT_ARNT2:0.890849049617;TFDP1:0.883455950013;ONECUT1,2:0.849767393636;ZBTB16:0.81909699613;GFI1B:0.793047630299;PRRX1,2:0.768094262172;CDC5L:0.733705193157;HOXA9_MEIS1:0.703433305978;POU1F1:0.656232563003;ELK1,4_GABP{A,B1}:0.643376965527;FOX{I1,J2}:0.63663155352;PAX4:0.636017721986;PRDM1:0.625572144594;ZFP161:0.62258458136;MYB:0.619567298708;NRF1:0.616019415333;POU3F1..4:0.610280854409;NKX6-1,2:0.571958382545;NR3C1:0.560483256403;NANOG:0.532386753823;GZF1:0.499423049119;YY1:0.472416781794;EVI1:0.469541208713;ALX4:0.460991857707;TP53:0.438592173213;HLF:0.437289272722;ARID5B:0.421855182097;FOS_FOS{B,L1}_JUN{B,D}:0.420781848068;RFX1:0.420360596465;GATA4:0.417047792381;DMAP1_NCOR{1,2}_SMARC:0.406707809858;HSF1,2:0.391118379388;TBX4,5:0.387796978736;CEBPA,B_DDIT3:0.385186439432;ZNF143:0.356565439584;POU5F1:0.34890007191;BACH2:0.34819044882;NFE2L2:0.335796571934;FOXD3:0.332855014904;ZIC1..3:0.329090681169;PBX1:0.310096442764;PAX8:0.303210777314;ADNP_IRX_SIX_ZHX:0.277848143687;NANOG{mouse}:0.270416233227;STAT1,3:0.262465364639;NFIX:0.26152385874;E2F1..5:0.247391053037;CREB1:0.233438927502;HOX{A5,B5}:0.228992205512;NFE2:0.214412042876;NKX3-1:0.213170103119;ELF1,2,4:0.207764372822;PPARG:0.203949596407;FOSL2:0.197815542018;HES1:0.180460785191;NKX3-2:0.167891357113;NKX2-3_NKX2-5:0.160218656954;PITX1..3:0.152931937132;NFATC1..3:0.152868431291;TEAD1:0.152868375181;FOXQ1:0.150413885774;NFY{A,B,C}:0.128668877173;PDX1:0.114635993596;RUNX1..3:0.104353864259;LHX3,4:0.101005338443;FOXP1:0.086459448205;ESRRA:0.0859997506417;VSX1,2:0.0560052256001;TEF:0.0548093853422;TLX1..3_NFIC{dimer}:0.0464322088975;TLX2:0.0393372364334;GFI1:0.0385160790051;NFE2L1:0.0237819473507;BREu{core}:-0.00298422048972;CDX1,2,4:-0.00665054406674;TOPORS:-0.00783177124575;ATF2:-0.0143262246586;PAX1,9:-0.0222211148905;FOXA2:-0.0241834724471;POU6F1:-0.0250872821022;SOX17:-0.0324461594257;CUX2:-0.0495762230501;RFX2..5_RFXANK_RFXAP:-0.0537073964115;SRF:-0.0545563243368;UFEwm:-0.0748449456083;AIRE:-0.0774556691288;PAX3,7:-0.0785358921239;HMGA1,2:-0.0843174457544;TAL1_TCF{3,4,12}:-0.0961053390283;ATF5_CREB3:-0.0962310017206;MAFB:-0.109949610586;TFAP4:-0.111724449774;CRX:-0.115535368449;ZNF238:-0.119157300544;FOXM1:-0.120231890068;LEF1_TCF7_TCF7L1,2:-0.14726334345;REST:-0.152999289711;HNF4A_NR2F1,2:-0.155913610702;ETS1,2:-0.157305747449;EBF1:-0.172740246881;HNF1A:-0.174759934343;MYBL2:-0.174917676274;EGR1..3:-0.176209254129;IKZF2:-0.182587441988;PAX5:-0.184338261351;PAX2:-0.197340314001;SOX{8,9,10}:-0.21089643161;NKX2-1,4:-0.214473053487;BPTF:-0.233370658275;RBPJ:-0.242188521183;KLF4:-0.247092060617;ATF4:-0.247124646612;GATA6:-0.248986014807;NFKB1_REL_RELA:-0.25458909182;NHLH1,2:-0.256080111558;POU2F1..3:-0.256320582633;MED-1{core}:-0.258124362341;MZF1:-0.272340911186;STAT2,4,6:-0.27495203284;FOXO1,3,4:-0.281722113625;ZNF384:-0.288001018225;RREB1:-0.309023960609;SPIB:-0.31188762809;SPZ1:-0.323611912755;PATZ1:-0.330089185547;GTF2I:-0.331062526883;SOX5:-0.332385443433;MYFfamily:-0.333099668461;HOX{A6,A7,B6,B7}:-0.335318802881;MTF1:-0.35142628097;HIC1:-0.354784033474;AR:-0.367267303006;FOXN1:-0.371502073859;SOX2:-0.37748837096;IKZF1:-0.385625103072;MTE{core}:-0.392219927893;XBP1:-0.407726523724;SPI1:-0.407791121364;STAT5{A,B}:-0.409687308533;TFAP2B:-0.423027312984;ZEB1:-0.428974737105;XCPE1{core}:-0.440114819473;IRF7:-0.444622564821;ZBTB6:-0.452814280128;RORA:-0.45564153854;FOX{D1,D2}:-0.463924287915;MYOD1:-0.465337440582;IRF1,2:-0.48229494686;ATF6:-0.483567871972;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.491332586125;TFAP2{A,C}:-0.496241692784;NR6A1:-0.50676995718;ZNF148:-0.515999589761;NR1H4:-0.517465761657;OCT4_SOX2{dimer}:-0.517512373913;FOXL1:-0.533026859753;T:-0.55122366777;TGIF1:-0.56172631292;MEF2{A,B,C,D}:-0.5861459528;GCM1,2:-0.620804588442;TBP:-0.628128805476;MAZ:-0.640836454103;NFIL3:-0.64194611631;DBP:-0.644579842588;SMAD1..7,9:-0.658344947856;TFCP2:-0.663248222362;LMO2:-0.663353130284;ESR1:-0.693919703743;NR5A1,2:-0.697130679521;HAND1,2:-0.727102326711;SP1:-0.751616334487;FOXP3:-0.752841216438;JUN:-0.779542917383;SNAI1..3:-0.785792325649;RXRA_VDR{dimer}:-0.824911774261;ZNF423:-0.852173547648;FOX{F1,F2,J1}:-0.912397664919;GTF2A1,2:-0.948814983825;EP300:-0.970706250276;GLI1..3:-1.10654685708;HMX1:-1.12437485214;PAX6:-1.33839613258ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:2.65366661229;SREBF1,2:2.3010715039;NKX2-2,8:1.61064492846;HBP1_HMGB_SSRP1_UBTF:1.53085353541;HOX{A4,D4}:1.44560704416;bHLH_family:1.36474005451;ALX1:1.32236842852;EN1,2:1.26270668937;ZBTB16:1.17320220618;RXR{A,B,G}:1.09351527689;ONECUT1,2:1.08554436274;HIF1A:1.08536480745;CDC5L:1.01294543419;FOXD3:0.994315616377;GFI1B:0.885060121267;NKX6-1,2:0.842267997663;AHR_ARNT_ARNT2:0.841747492531;ELK1,4_GABP{A,B1}:0.83503059224;TFDP1:0.8323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| 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| ||
|xref= | |||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10442-106F1;search_select_hide=table117:FF:10442-106F1 | |||
}} | }} | ||
Latest revision as of 14:02, 3 June 2020
| Name: | schwannoma cell line:HS-PSS |
|---|---|
| Species: | Human (Homo sapiens) |
| Library ID: | CNhs11245,CNhs11183 |
| Sample type: | cell lines |
| Genomic View: | UCSC |
| RefEX: | Specific genes |
| CAGEd-oPOSSUM: | link |
| ZENBU report : | link |
| Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11245
library id: CNhs11183
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11245
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.792 |
| 10 | 10 | 0.0384 |
| 100 | 100 | 0.316 |
| 101 | 101 | 0.682 |
| 102 | 102 | 0.799 |
| 103 | 103 | 0.832 |
| 104 | 104 | 0.819 |
| 105 | 105 | 0.533 |
| 106 | 106 | 0.00224 |
| 107 | 107 | 0.496 |
| 108 | 108 | 0.513 |
| 109 | 109 | 0.348 |
| 11 | 11 | 0.979 |
| 110 | 110 | 0.283 |
| 111 | 111 | 0.0977 |
| 112 | 112 | 0.481 |
| 113 | 113 | 0.0302 |
| 114 | 114 | 0.718 |
| 115 | 115 | 0.0613 |
| 116 | 116 | 0.253 |
| 117 | 117 | 0.246 |
| 118 | 118 | 0.998 |
| 119 | 119 | 0.122 |
| 12 | 12 | 0.448 |
| 120 | 120 | 0.225 |
| 121 | 121 | 0.722 |
| 122 | 122 | 0.758 |
| 123 | 123 | 0.682 |
| 124 | 124 | 0.577 |
| 125 | 125 | 0.503 |
| 126 | 126 | 0.274 |
| 127 | 127 | 0.658 |
| 128 | 128 | 0.0271 |
| 129 | 129 | 0.368 |
| 13 | 13 | 0.179 |
| 130 | 130 | 0.138 |
| 131 | 131 | 0.44 |
| 132 | 132 | 0.84 |
| 133 | 133 | 0.263 |
| 134 | 134 | 0.114 |
| 135 | 135 | 0.536 |
| 136 | 136 | 0.747 |
| 137 | 137 | 0.682 |
| 138 | 138 | 0.785 |
| 139 | 139 | 0.373 |
| 14 | 14 | 0.469 |
| 140 | 140 | 0.141 |
| 141 | 141 | 0.247 |
| 142 | 142 | 0.0138 |
| 143 | 143 | 0.282 |
| 144 | 144 | 0.842 |
| 145 | 145 | 0.391 |
| 146 | 146 | 0.186 |
| 147 | 147 | 0.47 |
| 148 | 148 | 0.16 |
| 149 | 149 | 0.233 |
| 15 | 15 | 0.934 |
| 150 | 150 | 0.764 |
| 151 | 151 | 0.241 |
| 152 | 152 | 0.0622 |
| 153 | 153 | 0.563 |
| 154 | 154 | 0.92 |
| 155 | 155 | 0.0243 |
| 156 | 156 | 0.463 |
| 157 | 157 | 0.368 |
| 158 | 158 | 0.453 |
| 159 | 159 | 0.0689 |
| 16 | 16 | 0.615 |
| 160 | 160 | 0.338 |
| 161 | 161 | 0.395 |
| 162 | 162 | 0.78 |
| 163 | 163 | 0.781 |
| 164 | 164 | 0.081 |
| 165 | 165 | 0.358 |
| 166 | 166 | 0.804 |
| 167 | 167 | 0.576 |
| 168 | 168 | 0.514 |
| 169 | 169 | 0.233 |
| 17 | 17 | 0.5 |
| 18 | 18 | 0.162 |
| 19 | 19 | 0.248 |
| 2 | 2 | 0.0685 |
| 20 | 20 | 0.112 |
| 21 | 21 | 0.374 |
| 22 | 22 | 0.175 |
| 23 | 23 | 0.328 |
| 24 | 24 | 0.412 |
| 25 | 25 | 0.288 |
| 26 | 26 | 0.701 |
| 27 | 27 | 0.172 |
| 28 | 28 | 0.848 |
| 29 | 29 | 0.176 |
| 3 | 3 | 0.846 |
| 30 | 30 | 0.223 |
| 31 | 31 | 0.251 |
| 32 | 32 | 0.0356 |
| 33 | 33 | 0.207 |
| 34 | 34 | 0.354 |
| 35 | 35 | 0.855 |
| 36 | 36 | 0.0549 |
| 37 | 37 | 0.553 |
| 38 | 38 | 0.623 |
| 39 | 39 | 0.751 |
| 4 | 4 | 0.0271 |
| 40 | 40 | 0.489 |
| 41 | 41 | 0.91 |
| 42 | 42 | 0.805 |
| 43 | 43 | 0.518 |
| 44 | 44 | 0.472 |
| 45 | 45 | 0.121 |
| 46 | 46 | 0.453 |
| 47 | 47 | 0.719 |
| 48 | 48 | 0.838 |
| 49 | 49 | 0.364 |
| 5 | 5 | 0.172 |
| 50 | 50 | 0.891 |
| 51 | 51 | 0.47 |
| 52 | 52 | 0.0741 |
| 53 | 53 | 0.409 |
| 54 | 54 | 0.396 |
| 55 | 55 | 0.56 |
| 56 | 56 | 0.811 |
| 57 | 57 | 0.456 |
| 58 | 58 | 0.113 |
| 59 | 59 | 0.112 |
| 6 | 6 | 0.699 |
| 60 | 60 | 0.0712 |
| 61 | 61 | 0.578 |
| 62 | 62 | 0.0684 |
| 63 | 63 | 0.699 |
| 64 | 64 | 0.688 |
| 65 | 65 | 0.397 |
| 66 | 66 | 0.232 |
| 67 | 67 | 0.974 |
| 68 | 68 | 0.585 |
| 69 | 69 | 0.682 |
| 7 | 7 | 0.366 |
| 70 | 70 | 0.152 |
| 71 | 71 | 0.987 |
| 72 | 72 | 0.667 |
| 73 | 73 | 0.98 |
| 74 | 74 | 0.306 |
| 75 | 75 | 0.753 |
| 76 | 76 | 0.0511 |
| 77 | 77 | 0.288 |
| 78 | 78 | 0.508 |
| 79 | 79 | 0.333 |
| 8 | 8 | 0.251 |
| 80 | 80 | 0.991 |
| 81 | 81 | 0.957 |
| 82 | 82 | 0.0921 |
| 83 | 83 | 0.852 |
| 84 | 84 | 0.533 |
| 85 | 85 | 0.0828 |
| 86 | 86 | 0.805 |
| 87 | 87 | 0.66 |
| 88 | 88 | 0.616 |
| 89 | 89 | 0.0168 |
| 9 | 9 | 0.469 |
| 90 | 90 | 0.0436 |
| 91 | 91 | 0.533 |
| 92 | 92 | 0.178 |
| 93 | 93 | 0.308 |
| 94 | 94 | 0.596 |
| 95 | 95 | 0.129 |
| 96 | 96 | 0.613 |
| 97 | 97 | 0.781 |
| 98 | 98 | 0.625 |
| 99 | 99 | 0.492 |
library id: CNhs11183
| Novel motif | Logo | P-value |
|---|---|---|
| 1 | 1 | 0.896 |
| 10 | 10 | 0.0761 |
| 100 | 100 | 0.529 |
| 101 | 101 | 0.72 |
| 102 | 102 | 0.748 |
| 103 | 103 | 0.703 |
| 104 | 104 | 0.725 |
| 105 | 105 | 0.744 |
| 106 | 106 | 8.98319e-4 |
| 107 | 107 | 0.367 |
| 108 | 108 | 0.376 |
| 109 | 109 | 0.693 |
| 11 | 11 | 0.703 |
| 110 | 110 | 0.55 |
| 111 | 111 | 0.16 |
| 112 | 112 | 0.203 |
| 113 | 113 | 0.0401 |
| 114 | 114 | 0.722 |
| 115 | 115 | 0.0956 |
| 116 | 116 | 0.212 |
| 117 | 117 | 0.457 |
| 118 | 118 | 0.87 |
| 119 | 119 | 0.0392 |
| 12 | 12 | 0.522 |
| 120 | 120 | 0.468 |
| 121 | 121 | 0.436 |
| 122 | 122 | 0.733 |
| 123 | 123 | 0.656 |
| 124 | 124 | 0.954 |
| 125 | 125 | 0.387 |
| 126 | 126 | 0.199 |
| 127 | 127 | 0.489 |
| 128 | 128 | 0.0105 |
| 129 | 129 | 0.396 |
| 13 | 13 | 0.525 |
| 130 | 130 | 0.245 |
| 131 | 131 | 0.307 |
| 132 | 132 | 0.801 |
| 133 | 133 | 0.272 |
| 134 | 134 | 0.197 |
| 135 | 135 | 0.537 |
| 136 | 136 | 0.942 |
| 137 | 137 | 0.837 |
| 138 | 138 | 0.946 |
| 139 | 139 | 0.284 |
| 14 | 14 | 0.407 |
| 140 | 140 | 0.33 |
| 141 | 141 | 0.425 |
| 142 | 142 | 0.018 |
| 143 | 143 | 0.417 |
| 144 | 144 | 0.838 |
| 145 | 145 | 0.439 |
| 146 | 146 | 0.492 |
| 147 | 147 | 0.565 |
| 148 | 148 | 0.201 |
| 149 | 149 | 0.0725 |
| 15 | 15 | 0.916 |
| 150 | 150 | 0.794 |
| 151 | 151 | 0.427 |
| 152 | 152 | 0.0409 |
| 153 | 153 | 0.421 |
| 154 | 154 | 0.994 |
| 155 | 155 | 0.018 |
| 156 | 156 | 0.457 |
| 157 | 157 | 0.626 |
| 158 | 158 | 0.492 |
| 159 | 159 | 0.184 |
| 16 | 16 | 0.408 |
| 160 | 160 | 0.248 |
| 161 | 161 | 0.509 |
| 162 | 162 | 0.71 |
| 163 | 163 | 0.696 |
| 164 | 164 | 0.139 |
| 165 | 165 | 0.379 |
| 166 | 166 | 0.877 |
| 167 | 167 | 0.676 |
| 168 | 168 | 0.241 |
| 169 | 169 | 0.117 |
| 17 | 17 | 0.476 |
| 18 | 18 | 0.175 |
| 19 | 19 | 0.16 |
| 2 | 2 | 0.0921 |
| 20 | 20 | 0.18 |
| 21 | 21 | 0.347 |
| 22 | 22 | 0.136 |
| 23 | 23 | 0.263 |
| 24 | 24 | 0.217 |
| 25 | 25 | 0.258 |
| 26 | 26 | 0.502 |
| 27 | 27 | 0.134 |
| 28 | 28 | 0.929 |
| 29 | 29 | 0.366 |
| 3 | 3 | 0.871 |
| 30 | 30 | 0.243 |
| 31 | 31 | 0.214 |
| 32 | 32 | 0.00246 |
| 33 | 33 | 0.344 |
| 34 | 34 | 0.373 |
| 35 | 35 | 0.872 |
| 36 | 36 | 0.0635 |
| 37 | 37 | 0.868 |
| 38 | 38 | 0.544 |
| 39 | 39 | 0.566 |
| 4 | 4 | 0.0335 |
| 40 | 40 | 0.728 |
| 41 | 41 | 0.917 |
| 42 | 42 | 0.697 |
| 43 | 43 | 0.349 |
| 44 | 44 | 0.196 |
| 45 | 45 | 0.131 |
| 46 | 46 | 0.397 |
| 47 | 47 | 0.934 |
| 48 | 48 | 0.961 |
| 49 | 49 | 0.267 |
| 5 | 5 | 0.125 |
| 50 | 50 | 0.916 |
| 51 | 51 | 0.41 |
| 52 | 52 | 0.0549 |
| 53 | 53 | 0.758 |
| 54 | 54 | 0.324 |
| 55 | 55 | 0.354 |
| 56 | 56 | 0.898 |
| 57 | 57 | 0.533 |
| 58 | 58 | 0.071 |
| 59 | 59 | 0.103 |
| 6 | 6 | 0.539 |
| 60 | 60 | 0.0512 |
| 61 | 61 | 0.785 |
| 62 | 62 | 0.0411 |
| 63 | 63 | 0.538 |
| 64 | 64 | 0.52 |
| 65 | 65 | 0.308 |
| 66 | 66 | 0.219 |
| 67 | 67 | 0.873 |
| 68 | 68 | 0.546 |
| 69 | 69 | 0.447 |
| 7 | 7 | 0.276 |
| 70 | 70 | 0.112 |
| 71 | 71 | 0.874 |
| 72 | 72 | 0.486 |
| 73 | 73 | 0.588 |
| 74 | 74 | 0.304 |
| 75 | 75 | 0.925 |
| 76 | 76 | 0.0918 |
| 77 | 77 | 0.301 |
| 78 | 78 | 0.386 |
| 79 | 79 | 0.417 |
| 8 | 8 | 0.174 |
| 80 | 80 | 0.727 |
| 81 | 81 | 0.827 |
| 82 | 82 | 0.0726 |
| 83 | 83 | 0.413 |
| 84 | 84 | 0.538 |
| 85 | 85 | 0.105 |
| 86 | 86 | 0.951 |
| 87 | 87 | 0.569 |
| 88 | 88 | 0.804 |
| 89 | 89 | 0.0176 |
| 9 | 9 | 0.502 |
| 90 | 90 | 0.0919 |
| 91 | 91 | 0.529 |
| 92 | 92 | 0.216 |
| 93 | 93 | 0.469 |
| 94 | 94 | 0.652 |
| 95 | 95 | 0.234 |
| 96 | 96 | 0.705 |
| 97 | 97 | 0.99 |
| 98 | 98 | 0.494 |
| 99 | 99 | 0.423 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11245
library id: CNhs11183
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0103225 neurilemoma cell line sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0002371 (somatic cell)
0002319 (neural cell)
0000095 (neuron associated cell)
0000243 (glial cell (sensu Vertebrata))
0002573 (Schwann cell)
0000125 (glial cell)
0000255 (eukaryotic cell)
UBERON: Anatomy
0000468 (multi-cellular organism)
0004121 (ectoderm-derived structure)
0011216 (organ system subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0000010 (peripheral nervous system)
0001016 (nervous system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0103225 (neurilemoma cell line sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000133 (neurectodermal cell)
CL:0000339 (glioblast (sensu Vertebrata))
CL:0000221 (ectodermal cell)
