FF:10014-101C5: Difference between revisions

Latest revision as of 12:14, 3 June 2020

Name:	colon, adult, pool1
Species:	Human (Homo sapiens)
Library ID:	CNhs10619
Sample type:	tissues
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	colon
dev stage	62,83,84 years old adult
sex	mixed
age	NA
cell type	CELL MIXTURE - tissue sample
cell line	NA
company	Ambion
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	0910061 -5
catalog number	Cat:AM6000 Lot:0910061 -5
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-ToTALLY-RNA-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005815

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10619		CAGE		DRX008638		DRR009510

Accession ID Hg19

Library id		BAM		CTSS
CNhs10619		DRZ000935		DRZ002320

Accession ID Hg38

Library id		BAM		CTSS
CNhs10619		DRZ012285		DRZ013670

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0732
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.119
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.00509
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0.209
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0.237
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.0368
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.0368
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.0368
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0.0368
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.0804
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.208
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0.0667
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.118
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.159
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0.547
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0.0368
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0.102
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.171
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0.53
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0.838
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	1.213
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0.0749
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.0228
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0.102
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.0368
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0.00463
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0.0368
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0.0368
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.193
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0.0368
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.25
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0.682
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.145
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0.117
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0.0368
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.0707
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.00508
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	-0.0233
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0.0368
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.268
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0.102
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0.0707
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0.0368
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0.0707
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.232
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.0632
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0.0538
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0.367
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0.0368
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0.35
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.185
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0.102
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0.0368
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10619

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.211
MA0003.1	MA0003.1	0.113
MA0004.1	MA0004.1	0.289
MA0006.1	MA0006.1	0.0774
MA0007.1	MA0007.1	0.0818
MA0009.1	MA0009.1	0.778
MA0014.1	MA0014.1	0.792
MA0017.1	MA0017.1	7.05636e-16
MA0018.2	MA0018.2	0.236
MA0019.1	MA0019.1	0.0445
MA0024.1	MA0024.1	0.13
MA0025.1	MA0025.1	0.774
MA0027.1	MA0027.1	0.95
MA0028.1	MA0028.1	1.03542e-4
MA0029.1	MA0029.1	0.742
MA0030.1	MA0030.1	1.74849e-4
MA0031.1	MA0031.1	0.00776
MA0035.2	MA0035.2	0.00269
MA0038.1	MA0038.1	0.994
MA0039.2	MA0039.2	0.0618
MA0040.1	MA0040.1	0.253
MA0041.1	MA0041.1	0.185
MA0042.1	MA0042.1	0.659
MA0043.1	MA0043.1	0.0213
MA0046.1	MA0046.1	4.00924e-52
MA0047.2	MA0047.2	8.25214e-6
MA0048.1	MA0048.1	0.01
MA0050.1	MA0050.1	0.00639
MA0051.1	MA0051.1	0.0166
MA0052.1	MA0052.1	0.413
MA0055.1	MA0055.1	0.00261
MA0057.1	MA0057.1	0.503
MA0058.1	MA0058.1	0.204
MA0059.1	MA0059.1	0.00424
MA0060.1	MA0060.1	0.481
MA0061.1	MA0061.1	1.28102e-4
MA0062.2	MA0062.2	1.00055e-5
MA0065.2	MA0065.2	0.0356
MA0066.1	MA0066.1	0.0658
MA0067.1	MA0067.1	0.129
MA0068.1	MA0068.1	0.0264
MA0069.1	MA0069.1	0.344
MA0070.1	MA0070.1	0.709
MA0071.1	MA0071.1	0.35
MA0072.1	MA0072.1	0.362
MA0073.1	MA0073.1	0.845
MA0074.1	MA0074.1	0.805
MA0076.1	MA0076.1	6.81515e-5
MA0077.1	MA0077.1	0.459
MA0078.1	MA0078.1	0.0291
MA0079.2	MA0079.2	0.0588
MA0080.2	MA0080.2	0.676
MA0081.1	MA0081.1	0.0521
MA0083.1	MA0083.1	2.49012e-4
MA0084.1	MA0084.1	0.289
MA0087.1	MA0087.1	0.197
MA0088.1	MA0088.1	0.158
MA0090.1	MA0090.1	0.543
MA0091.1	MA0091.1	0.644
MA0092.1	MA0092.1	0.894
MA0093.1	MA0093.1	0.273
MA0099.2	MA0099.2	7.32179e-12
MA0100.1	MA0100.1	0.133
MA0101.1	MA0101.1	0.00188
MA0102.2	MA0102.2	0.714
MA0103.1	MA0103.1	0.00355
MA0104.2	MA0104.2	7.62393e-4
MA0105.1	MA0105.1	1.33718e-6
MA0106.1	MA0106.1	0.0145
MA0107.1	MA0107.1	0.00342
MA0108.2	MA0108.2	2.35791e-16
MA0111.1	MA0111.1	0.733
MA0112.2	MA0112.2	0.855
MA0113.1	MA0113.1	0.264
MA0114.1	MA0114.1	8.21563e-12
MA0115.1	MA0115.1	3.32557e-7
MA0116.1	MA0116.1	0.00154
MA0117.1	MA0117.1	0.158
MA0119.1	MA0119.1	0.392
MA0122.1	MA0122.1	0.417
MA0124.1	MA0124.1	0.351
MA0125.1	MA0125.1	0.233
MA0131.1	MA0131.1	0.195
MA0135.1	MA0135.1	0.052
MA0136.1	MA0136.1	0.659
MA0137.2	MA0137.2	0.158
MA0138.2	MA0138.2	0.14
MA0139.1	MA0139.1	0.34
MA0140.1	MA0140.1	0.731
MA0141.1	MA0141.1	0.371
MA0142.1	MA0142.1	0.24
MA0143.1	MA0143.1	0.0636
MA0144.1	MA0144.1	0.275
MA0145.1	MA0145.1	0.158
MA0146.1	MA0146.1	0.942
MA0147.1	MA0147.1	2.39733e-4
MA0148.1	MA0148.1	2.10988e-5
MA0149.1	MA0149.1	0.0592
MA0150.1	MA0150.1	4.04805e-5
MA0152.1	MA0152.1	0.705
MA0153.1	MA0153.1	3.62922e-32
MA0154.1	MA0154.1	0.381
MA0155.1	MA0155.1	0.672
MA0156.1	MA0156.1	0.229
MA0157.1	MA0157.1	0.531
MA0159.1	MA0159.1	0.918
MA0160.1	MA0160.1	0.734
MA0162.1	MA0162.1	0.834
MA0163.1	MA0163.1	7.35412e-6
MA0164.1	MA0164.1	0.128
MA0258.1	MA0258.1	0.438
MA0259.1	MA0259.1	0.0322

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10619

Novel motif	Logo	P-value
1	1	0.122
10	10	0.0431
100	100	0.226
101	101	0.696
102	102	0.162
103	103	0.266
104	104	0.938
105	105	0.369
106	106	0.642
107	107	0.219
108	108	0.746
109	109	0.461
11	11	0.301
110	110	0.124
111	111	0.0758
112	112	0.532
113	113	0.864
114	114	0.0645
115	115	0.983
116	116	0.582
117	117	0.0292
118	118	0.296
119	119	0.705
12	12	0.843
120	120	0.092
121	121	0.767
122	122	0.824
123	123	0.167
124	124	0.635
125	125	0.0309
126	126	0.14
127	127	0.316
128	128	0.195
129	129	0.215
13	13	0.256
130	130	0.605
131	131	0.408
132	132	0.0867
133	133	0.00536
134	134	0.0172
135	135	0.174
136	136	0.866
137	137	0.341
138	138	0.503
139	139	0.0724
14	14	0.738
140	140	0.261
141	141	0.318
142	142	0.764
143	143	0.0247
144	144	0.701
145	145	0.415
146	146	0.262
147	147	0.65
148	148	0.969
149	149	0.134
15	15	0.0557
150	150	0.61
151	151	0.867
152	152	0.0843
153	153	0.993
154	154	0.538
155	155	0.822
156	156	0.904
157	157	0.413
158	158	0.248
159	159	0.716
16	16	0.342
160	160	0.655
161	161	0.458
162	162	0.481
163	163	0.811
164	164	0.0502
165	165	0.652
166	166	0.239
167	167	0.0894
168	168	0.0323
169	169	0.669
17	17	0.808
18	18	0.00772
19	19	0.43
2	2	0.0349
20	20	0.0656
21	21	0.194
22	22	0.563
23	23	0.551
24	24	0.643
25	25	0.61
26	26	0.342
27	27	0.568
28	28	0.84
29	29	0.0155
3	3	0.329
30	30	0.0117
31	31	0.839
32	32	0.366
33	33	0.378
34	34	0.272
35	35	0.199
36	36	0.0229
37	37	0.375
38	38	0.735
39	39	0.172
4	4	0.305
40	40	0.409
41	41	0.0836
42	42	0.447
43	43	0.482
44	44	0.761
45	45	0.162
46	46	0.215
47	47	0.27
48	48	0.446
49	49	0.0792
5	5	0.809
50	50	0.221
51	51	0.983
52	52	0.0599
53	53	0.649
54	54	0.77
55	55	0.479
56	56	0.857
57	57	0.073
58	58	0.945
59	59	0.47
6	6	0.863
60	60	0.372
61	61	0.576
62	62	0.612
63	63	0.957
64	64	0.527
65	65	0.707
66	66	0.0625
67	67	0.109
68	68	0.878
69	69	0.684
7	7	0.879
70	70	0.0639
71	71	0.0748
72	72	0.968
73	73	0.79
74	74	0.503
75	75	0.0175
76	76	0.009
77	77	0.0864
78	78	0.969
79	79	0.139
8	8	0.552
80	80	0.0296
81	81	0.145
82	82	0.409
83	83	0.726
84	84	0.747
85	85	0.464
86	86	0.887
87	87	0.951
88	88	0.793
89	89	0.875
9	9	0.498
90	90	0.0287
91	91	0.681
92	92	0.792
93	93	0.0535
94	94	0.0186
95	95	0.254
96	96	0.681
97	97	0.899
98	98	0.235
99	99	0.127

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10619

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0010014 human colon - adult sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0001155 (colon)
0000160 (intestine)
0000479 (tissue)
0001007 (digestive system)
0000064 (organ part)
0004119 (endoderm-derived structure)
0011216 (organ system subdivision)
0000062 (organ)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000063 (organ segment)
0000481 (multi-tissue structure)
0004921 (subdivision of digestive tract)
0000477 (anatomical cluster)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0000059 (large intestine)
0005409 (gastrointestinal system)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010014 (human colon - adult sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0010316 (germ layer / neural crest)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000922,UBERON:0001155,UBERON:0000160,UBERON:0000479,UBERON:0001007,UBERON:0000064,UBERON:0000062,UBERON:0004119,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0004921,UBERON:0005423,UBERON:0000481,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0000925,UBERON:0006598,UBERON:0004185,UBERON:0002532,UBERON:0001555,UBERON:0000059,UBERON:0005409,UBERON:0007026,UBERON:0006595
+|DRA_sample_Accession=CAGE@SAMD00005815
+|accession_numbers=CAGE;DRX008638;DRR009510;DRZ000935;DRZ002320;DRZ012285;DRZ013670
+|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0001155,UBERON:0000160,UBERON:0000479,UBERON:0001007,UBERON:0000064,UBERON:0004119,UBERON:0011216,UBERON:0000062,UBERON:0000061,UBERON:0000465,UBERON:0000063,UBERON:0000481,UBERON:0004921,UBERON:0000477,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0010317,UBERON:0001555,UBERON:0000059,UBERON:0005409
 |ancestors_in_cell_lineage_facet=
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000101,FF:0000001,FF:0000998,FF:0000004,FF:0010014
 |comment=
 |created_by=
 |creation_date=
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr1:201979743..201979762,+!p1@ELF3!2.25!176.12!ELF3;;chr19:4153613..4153652,+!p1@CREB3L3!2.25!175.59!CREB3L3;;chr5:149546334..149546364,+!p1@CDX1!2.09!123.31!CDX1;;chr4:174451370..174451387,-!p1@HAND2!1.93!84.57!HAND2;;chr8:76319876..76319926,+!p1@HNF4G!1.93!83.95!HNF4G;;chr1:201979703..201979721,+!p2@ELF3!1.88!75.72!ELF3;;chr8:76452097..76452126,+!p2@HNF4G!1.80!61.83!HNF4G;;chr20:43029862..43029900,+!p1@HNF4A!1.79!61.30!HNF4A;;chr6:134210243..134210257,+!p1@TCF21!1.79!60.86!TCF21;;chr16:86544113..86544145,+!p1@FOXF1!1.77!71.12!FOXF1;;chr13:28543431..28543487,-!p1@CDX2!1.73!52.10!CDX2;;chr7:73038839..73038862,-!p1@MLXIPL!1.65!43.52!MLXIPL;;chr3:12330560..12330579,+!p1@PPARG!1.64!48.56!PPARG;;chr19:46801639..46801699,+!p1@HIF3A!1.64!42.55!HIF3A;;chr19:50922187..50922204,+!p1@SPIB!1.64!42.19!SPIB;;chr20:42984330..42984364,+!p2@HNF4A!1.58!36.89!HNF4A;;chr13:73633131..73633149,+!p1@KLF5!1.52!327.91!KLF5;;chr16:79634595..79634620,-!p2@MAF!1.51!55.73!MAF;;chr6:391743..391759,+!p1@IRF4!1.47!28.31!IRF4;;chr16:79634624..79634642,-!p1@MAF!1.45!103.76!MAF;;chr16:85932760..85932775,+!p1@IRF8!1.45!27.42!IRF8;;chr11:113930291..113930339,+!p2@ZBTB16!1.43!41.93!ZBTB16;;chr11:113930425..113930471,+!p1@ZBTB16!1.43!37.33!ZBTB16;;chr13:28494130..28494168,+!p1@PDX1!1.43!26.18!PDX1;;chr11:16419037..16419064,-!p3@SOX6!1.43!25.74!SOX6;;chr13:28543285..28543314,-!p2@CDX2!1.41!24.50!CDX2;;chr8:11561684..11561751,+!p1@GATA4!1.39!23.62!GATA4;;chr11:111249993..111250006,-!p1@POU2AF1!1.38!23.18!POU2AF1;;chr20:62680984..62680999,-!p1@SOX18!1.37!29.72!SOX18;;chr6:1389789..1389821,+!p1@FOXF2!1.36!29.63!FOXF2;;chr3:119500941..119500961,+!p1@NR1I2!1.36!22.03!NR1I2;;chr11:34642612..34642646,+!p1@EHF!1.35!21.41!EHF;;chrY:21906594..21906622,-!p1@KDM5D!1.35!21.23!KDM5D;;chr5:153857778..153857794,-!p1@HAND1!1.34!20.96!HAND1;;chr18:55102598..55102623,+!p1@ONECUT2!1.34!20.70!ONECUT2;;chr1:151804244..151804310,-!p1@RORC!1.33!20.61!RORC;;chr7:27192185..27192209,-!p1@HOXA3!1.32!19.99!HOXA3;;chr8:76452129..76452159,+!p5@HNF4G!1.30!18.84!HNF4G;;chr8:55370487..55370503,+!p1@SOX17!1.29!18.58!SOX17;;chr1:27240455..27240474,-!p1@NR0B2!1.29!18.40!NR0B2;;chr18:55102628..55102646,+!p2@ONECUT2!1.27!17.78!ONECUT2;;chr4:94749897..94749909,+!p1@ATOH1!1.25!16.81!ATOH1;;chr11:47400078..47400106,-!p1@SPI1!1.25!16.63!SPI1;;chr13:28543388..28543406,-!p3@CDX2!1.23!16.01!CDX2;;chr20:61051039..61051057,-!p1@GATA5!1.23!16.01!GATA5;;chr22:38380543..38380569,-!p1@SOX10!1.23!15.92!SOX10;;chr1:199996831..199996843,+!p4@NR5A2!1.23!15.83!NR5A2;;chr12:48298765..48298783,-!p2@VDR!1.22!32.20!VDR;;chr1:199996733..199996781,+!p1@NR5A2!1.22!15.48!NR5A2;;chr12:52437488..52437507,+!p2@NR4A1!1.21!15.21!NR4A1;;chr10:48355030..48355090,+!p1@ZNF488!1.20!19.11!ZNF488;;chr18:19749386..19749404,+!p2@GATA6!1.19!20.70!GATA6;;chr6:135502501..135502546,+!p1@MYB!1.19!17.25!MYB;;chr1:42801540..42801562,-!p4@FOXJ3!1.19!14.42!FOXJ3;;chr4:149363494..149363543,-!p1@NR3C2!1.19!14.33!NR3C2;;chr18:19749541..19749557,+!p1@GATA6!1.18!44.58!GATA6;;chr4:174451350..174451363,-!p3@HAND2!1.18!13.98!HAND2;;chr2:19558373..19558392,-!p1@OSR1!1.17!37.68!OSR1;;chr13:72441315..72441454,-!p1@DACH1!1.17!27.69!DACH1;;chr17:53342311..53342400,+!p1@HLF!1.17!15.83!HLF;;chr17:46682321..46682362,-!p1@HOXB6!1.17!13.71!HOXB6;;chr21:39870339..39870443,-!p1@ERG!1.16!13.45!ERG;;chr4:149363475..149363492,-!p2@NR3C2!1.16!13.36!NR3C2;;chr7:113726357..113726443,+!p1@FOXP2!1.15!22.56!FOXP2;;chr10:101292684..101292706,+!p1@NKX2-3!1.15!13.27!NKX2-3;;chr8:102504651..102504683,+!p1@GRHL2!1.14!12.83!GRHL2;;chr19:46367576..46367592,+!p1@FOXA3!1.14!12.74!FOXA3;;chr16:79634581..79634592,-!p4@MAF!1.14!12.65!MAF;;chr1:214161272..214161322,+!p1@PROX1!1.12!17.16!PROX1;;chr1:40105299..40105326,-!p1@HEYL!1.11!11.76!HEYL;;chr6:34524093..34524135,-!p1@SPDEF!1.10!11.68!SPDEF;;chr4:57547454..57547469,-!p1@HOPX!1.10!11.59!HOPX;;chr2:70142232..70142251,+!p1@MXD1!1.09!64.22!MXD1;;chr12:121416340..121416360,+!p1@HNF1A!1.09!11.41!HNF1A;;chr20:50159198..50159299,-!p1@NFATC2!1.08!16.36!NFATC2;;chr7:27205136..27205164,-!p1@HOXA9!1.08!11.06!HOXA9;;chr4:174450089..174450153,-!p2@HAND2!1.08!11.06!HAND2;;chr2:182545234..182545252,-!p1@NEUROD1!1.07!10.61!NEUROD1;;chr11:12696579..12696611,+!p4@TEAD1!1.07!10.61!TEAD1;;chr11:61520075..61520136,+!p1@C11orf9!1.06!22.29!C11orf9;;chr13:28543253..28543276,-!p5@CDX2!1.06!10.53!CDX2;;chr14:38064429..38064486,-!p1@FOXA1!1.06!10.44!FOXA1;;chr12:100897130..100897149,+!p3@NR1H4!1.05!10.26!NR1H4;;chr2:68592406..68592424,+!p1@PLEK!1.05!10.17!PLEK;;chr20:51588873..51588953,+!p1@TSHZ2!1.04!13.18!TSHZ2;;chr1:209979467..209979494,-!p1@IRF6!1.04!11.32!IRF6;;chr11:113930401..113930422,+!p3@ZBTB16!1.03!9.82!ZBTB16;;chr13:28543316..28543329,-!p4@CDX2!1.03!9.73!CDX2;;chr12:52445218..52445237,+!p1@NR4A1!1.02!121.54!NR4A1;;chr7:27213893..27213954,-!p1@HOXA10!1.02!9.38!HOXA10;;chr3:169381420..169381535,-!p1@MECOM!1.01!10.88!MECOM;;chr1:25291475..25291511,-!p2@RUNX3!1.01!9.29!RUNX3;;chr1:10856639..10856662,-!p2@CASZ1!1.01!9.20!CASZ1;;chrX:107018969..107019024,-!p6@TSC22D3!1.00!12.47!TSC22D3;;chr7:137620650..137620677,-!p3@CREB3L2!1.00!9.11!CREB3L2;;chr19:33793430..33793447,-!p1@CEBPA!0.99!37.59!CEBPA;;chr3:126076242..126076257,-!p1@KLF15!0.99!10.97!KLF15;;chr11:34664014..34664045,+!p4@EHF!0.99!8.76!EHF;;chr17:38498594..38498661,+!p2@RARA!0.98!29.37!RARA;;chr1:61548225..61548299,+!p1@NFIA!0.97!113.14!NFIA;;chr1:10856665..10856683,-!p4@CASZ1!0.97!8.23!CASZ1;;chr8:71316428..71316459,-!p2@NCOA2!0.96!13.89!NCOA2;;chrX:106960285..106960299,-!p1@TSC22D3!0.95!221.06!TSC22D3;;chr6:106534192..106534224,+!p1@PRDM1!0.95!23.00!PRDM1;;chr11:65554528..65554546,+!p1@OVOL1!0.95!7.96!OVOL1;;chr2:122042770..122042785,-!p1@TFCP2L1!0.95!7.96!TFCP2L1;;chr1:209979411..209979433,-!p2@IRF6!0.94!7.70!IRF6;;chr7:27224842..27224872,-!p1@HOXA11!0.93!7.43!HOXA11;;chr5:88178983..88179012,-!p1@MEF2C!0.92!59.27!MEF2C;;chr1:164528410..164528428,+!p1@PBX1!0.92!57.76!PBX1;;chr8:10588010..10588030,-!p1@SOX7!0.92!7.34!SOX7;;chr11:34645791..34645836,+!p3@EHF!0.92!7.34!EHF;;chr9:73028814..73028895,-!p1@KLF9!0.91!74.57!KLF9;;chr4:26165074..26165110,+!p9@RBPJ!0.91!7.17!RBPJ;;chr11:129245526..129245553,+!p1@BARX2!0.91!7.08!BARX2;;chr2:60780753..60780800,-!p1@BCL11A!0.90!35.38!BCL11A;;chr16:79634464..79634493,-!p5@MAF!0.90!6.99!MAF;;chr1:2985760..2985774,+!p1@PRDM16!0.90!6.90!PRDM16;;chr2:46524897..46524911,+!p2@EPAS1!0.89!19.73!EPAS1;;chr7:114054885..114054910,+!p4@FOXP2!0.89!6.81!FOXP2;;chr7:27224795..27224840,-!p2@HOXA11!0.89!6.81!HOXA11;;chr3:69788576..69788648,+!p1@MITF!0.88!36.53!MITF;;chr2:145277882..145277967,-!p3@ZEB2!0.88!11.59!ZEB2;;chr18:53068911..53068935,-!p4@TCF4!0.88!7.43!TCF4;;chr11:65554563..65554576,+!p2@OVOL1!0.88!6.63!OVOL1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!0.88!6.63!PEG3;;chr1:200011711..200011752,+!p3@NR5A2!0.88!6.63!NR5A2;;chr19:46806868..46806883,+!p3@HIF3A!0.88!6.55!HIF3A;;chr20:18038521..18038571,-!p1@OVOL2!0.88!6.55!OVOL2;;chr5:71803177..71803255,-!p1@ZNF366!0.88!6.55!ZNF366;;chr18:72922811..72922827,+!p1@TSHZ1!0.87!33.17!TSHZ1;;chr2:66662281..66662308,+!p1@MEIS1!0.87!23.35!MEIS1;;chr3:141868230..141868250,-!p6@TFDP2!0.87!7.96!TFDP2;;chr11:47279248..47279264,+!p3@NR1H3!0.87!7.34!NR1H3;;chr8:11534438..11534451,+!p3@GATA4!0.87!6.37!GATA4;;chr1:61548069..61548102,+!p3@NFIA!0.86!15.92!NFIA;;chr15:42749722..42749739,-!p2@ZFP106!0.86!11.50!ZFP106;;chr17:36105042..36105060,-!p1@HNF1B!0.86!6.19!HNF1B;;chr20:20348740..20348757,+!p1@INSM1!0.86!6.19!INSM1;;chr8:60031682..60031710,-!p2@TOX!0.85!10.17!TOX;;chr6:36355513..36355578,-!p2@ETV7!0.85!7.78!ETV7;;chr6:1389989..1390019,+!p2@FOXF2!0.85!6.10!FOXF2;;chr1:10856694..10856715,-!p3@CASZ1!0.85!6.10!CASZ1;;chr11:34642656..34642667,+!p2@EHF!0.85!6.02!EHF;;chr3:114819124..114819200,-!p3@ZBTB20!0.84!14.42!ZBTB20;;chr1:221052840..221052875,+!p4@HLX!0.84!7.08!HLX;;chr3:141043050..141043063,+!p22@ZBTB38!0.84!5.93!ZBTB38;;chr2:60780607..60780624,-!p2@BCL11A!0.83!18.58!BCL11A;;chr11:47279504..47279563,+!p1@NR1H3!0.83!13.71!NR1H3;;chr1:10754477..10754517,-!p1@CASZ1!0.83!9.91!CASZ1;;chr22:29196433..29196445,-!p4@XBP1!0.83!6.37!XBP1;;chr7:63505799..63505904,+!p1@ZNF727!0.83!5.84!ZNF727;;chr7:137620684..137620711,-!p4@CREB3L2!0.83!5.75!CREB3L2;;chr7:15726296..15726315,-!p1@MEOX2!0.83!5.75!MEOX2;;chr1:164528445..164528459,+!p2@PBX1!0.82!18.84!PBX1;;chr1:61547894..61547968,+!p2@NFIA!0.82!17.16!NFIA;;chr3:126076264..126076305,-!p2@KLF15!0.82!7.96!KLF15;;chr3:128212033..128212051,-!p1@GATA2!0.82!5.66!GATA2;;chr8:25902876..25902936,-!p1@EBF2!0.82!5.66!EBF2;;chr16:52581025..52581072,-!p1@TOX3!0.82!5.66!TOX3;;chr6:1389824..1389840,+!p3@FOXF2!0.82!5.57!FOXF2;;chr17:38256822..38256851,-!p1@NR1D1!0.81!46.35!NR1D1;;chrX:70315688..70315709,+!p1@FOXO4!0.81!13.53!FOXO4;;chr1:61548374..61548415,+!p4@NFIA!0.81!10.70!NFIA;;chr2:176994408..176994492,+!p1@HOXD8!0.81!5.48!HOXD8;;chr3:63953435..63953499,+!p1@ATXN7!0.81!5.40!ATXN7;;chr7:44143925..44143970,+!p1@AEBP1!0.80!129.24!AEBP1;;chr11:46299199..46299233,+!p1@CREB3L1!0.80!29.81!CREB3L1;;chr20:43030002..43030028,+!p3@HNF4A!0.80!5.31!HNF4A;;chr9:14314566..14314618,-!p1@NFIB!0.79!67.32!NFIB;;chr17:46621937..46621966,-!p2@HOXB2!0.79!15.04!HOXB2;;chr8:60031762..60031803,-!p3@TOX!0.79!7.78!TOX;;chr7:156803329..156803362,-!p1@MNX1!0.79!5.22!MNX1;;chr7:27239703..27239715,-!p1@HOXA13!0.79!5.13!HOXA13;;chr10:51572408..51572454,+!p3@NCOA4!0.78!31.76!NCOA4;;chr3:114866084..114866118,-!p2@ZBTB20!0.78!19.46!ZBTB20;;chr17:7492684..7492778,-!p2@SOX15!0.78!11.23!SOX15;;chr2:66662249..66662267,+!p2@MEIS1!0.77!20.52!MEIS1;;chr9:127533519..127533573,-!p2@NR6A1!0.77!6.10!NR6A1;;chr3:141043020..141043049,+!p17@ZBTB38!0.77!4.95!ZBTB38;;chr17:53344945..53344977,+!p2@HLF!0.77!4.87!HLF;;chr7:15726243..15726293,-!p2@MEOX2!0.77!4.87!MEOX2;;chr7:97840743..97840786,+!p1@BHLHA15!0.77!4.87!BHLHA15;;chr8:48650715..48650735,-!p1@CEBPD!0.76!666.44!CEBPD;;chr10:114709999..114710031,+!p1@TCF7L2!0.76!123.84!TCF7L2;;chr3:18466787..18466839,-!p1@SATB1!0.76!23.18!SATB1;;chr16:79633894..79633954,-!p3@MAF!0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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000160;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001155;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0005409
+|ffid_belonging_in_development=UBERON:0002532,UBERON:0006595,UBERON:0010316
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 35: / Line 42: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/colon%252c%2520adult%252c%2520pool1.CNhs10619.10014-101C5.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/colon%252c%2520adult%252c%2520pool1.CNhs10619.10014-101C5.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/colon%252c%2520adult%252c%2520pool1.CNhs10619.10014-101C5.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/colon%252c%2520adult%252c%2520pool1.CNhs10619.10014-101C5.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/colon%252c%2520adult%252c%2520pool1.CNhs10619.10014-101C5.hg38.nobarcode.ctss.bed.gz
 |id=FF:10014-101C5
 |is_a=EFO:0002091;;FF:0010014
 |is_obsolete=
+|library_id=CNhs10619
+|library_id_phase_based=2:CNhs10619
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10014
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10014
 |name=colon, adult, pool1
 |namespace=FANTOM5
@@ Line 43: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10619,LSID656,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=101
 |rna_catalog_number=Cat:AM6000 Lot:0910061 -5
@@ Line 58: / Line 79: @@
 |rna_weight_ug=10
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+|sample_category=tissues
 |sample_cell_catalog=NA
 |sample_cell_line=
@@ Line 79: / Line 101: @@
 |top_motifs=HNF4A_NR2F1,2:6.17982717821;HNF1A:4.1852458009;RXR{A,B,G}_{NR1H2,PPAR}dimers:2.97743531193;GATA6:2.51497333229;NR1H4:2.2229534358;SP1:2.18869153487;AR:2.01657536191;SNAI1..3:2.01585090536;T:1.95110676896;ZEB1:1.88711902113;MTF1:1.8763845941;ESRRA:1.80579235391;TBP:1.78992475971;SRF:1.72541256102;FOX{D1,D2}:1.71032168487;FOX{F1,F2,J1}:1.66207819773;TFCP2:1.64285819161;MAZ:1.62463376666;RBPJ:1.59934929512;TFAP2{A,C}:1.52513301289;XCPE1{core}:1.52460054935;SPZ1:1.51533851241;FOXA2:1.44203958121;FOXL1:1.43058622419;ZNF148:1.323126132;NANOG:1.29955082283;MYBL2:1.25673112396;FOXO1,3,4:1.25354444089;TLX1..3_NFIC{dimer}:1.23450016649;MYFfamily:1.22187521752;ATF6:1.21176817819;PAX6:1.20889638508;PATZ1:1.20169125418;POU5F1:1.15756647484;EP300:1.15553788715;NR3C1:1.13263777733;MYOD1:1.12941365457;FOX{I1,J2}:1.10348555054;MTE{core}:1.05577815381;GTF2I:1.04681401936;ADNP_IRX_SIX_ZHX:1.04596752184;HIC1:1.02913352185;NFATC1..3:1.02037708555;TFAP2B:0.98619063851;POU2F1..3:0.983697366037;TLX2:0.973587869356;MED-1{core}:0.911856078791;GTF2A1,2:0.893728844104;GFI1B:0.85712912328;LMO2:0.845596026563;HMX1:0.835000808895;MZF1:0.82998727814;EBF1:0.806997071652;POU6F1:0.772968400548;HOX{A6,A7,B6,B7}:0.758587915262;PAX5:0.758578587199;DBP:0.725684069938;PRDM1:0.706687533283;TFAP4:0.695258416688;TBX4,5:0.675560060641;NHLH1,2:0.666043644703;IRF7:0.659070634534;ESR1:0.640219763641;NR5A1,2:0.638638725258;NR6A1:0.633527770308;EGR1..3:0.617523147014;RREB1:0.604526469223;bHLH_family:0.593236322817;FOXM1:0.588268563793;IRF1,2:0.578185968713;STAT1,3:0.556149601838;ZNF423:0.554779392964;ALX1:0.488450331837;REST:0.464529827606;FOXD3:0.463221346188;SOX5:0.46245053305;STAT2,4,6:0.439999037102;RXR{A,B,G}:0.431843277602;NKX2-3_NKX2-5:0.430394719223;ETS1,2:0.424845265589;DMAP1_NCOR{1,2}_SMARC:0.393560325944;SREBF1,2:0.393165776306;MEF2{A,B,C,D}:0.323036991108;IKZF1:0.316721197363;TGIF1:0.314847280025;SMAD1..7,9:0.284128735711;NFIX:0.267849210024;BREu{core}:0.233199754094;ZFP161:0.227829977061;FOXP1:0.22319872264;RFX2..5_RFXANK_RFXAP:0.216411599786;PITX1..3:0.193031946048;TEAD1:0.189057226574;SPIB:0.165860713043;FOXN1:0.125214190578;ATF2:0.0681447351113;HBP1_HMGB_SSRP1_UBTF:0.0563305906391;IKZF2:0.0228599917821;CRX:0.0183774765253;LEF1_TCF7_TCF7L1,2:0.0116771427551;ZNF143:0.00247455012437;GCM1,2:-0.00378446885997;VSX1,2:-0.00927820635734;MAFB:-0.0127204802296;HMGA1,2:-0.0596024213389;PRRX1,2:-0.0753007321022;SPI1:-0.0851728669809;NKX2-2,8:-0.0960831264369;XBP1:-0.100561831079;GZF1:-0.101902557521;NFY{A,B,C}:-0.103288109981;NFIL3:-0.123895548757;RUNX1..3:-0.126740879356;ZBTB6:-0.139519131812;ONECUT1,2:-0.142376795524;SOX2:-0.150768613442;ZNF238:-0.163910957014;ATF4:-0.174782710186;JUN:-0.184505188221;ELF1,2,4:-0.232307319378;PBX1:-0.234291988202;HAND1,2:-0.246249849389;GFI1:-0.255388980714;GATA4:-0.262434773107;CDC5L:-0.264477888196;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.265106944735;NKX3-2:-0.297750512696;TFDP1:-0.30079372902;GLI1..3:-0.321634811244;TP53:-0.35166107891;NFE2:-0.354158984624;KLF4:-0.36801271652;NKX2-1,4:-0.368218161364;NKX6-1,2:-0.375933852955;FOXQ1:-0.389615856036;HLF:-0.39530705483;TOPORS:-0.402047579834;PDX1:-0.405064371158;FOSL2:-0.428599835846;NFKB1_REL_RELA:-0.435210619116;SOX{8,9,10}:-0.435871739807;ATF5_CREB3:-0.448928211315;RORA:-0.458583312113;LHX3,4:-0.462511679157;HES1:-0.481153904365;PAX1,9:-0.495838174779;SOX17:-0.501841273956;PAX3,7:-0.503980350509;RXRA_VDR{dimer}:-0.565682458283;BPTF:-0.577564976073;AHR_ARNT_ARNT2:-0.585463285768;E2F1..5:-0.592350310861;FOS_FOS{B,L1}_JUN{B,D}:-0.594128307752;CUX2:-0.596659748657;CEBPA,B_DDIT3:-0.597504856766;NRF1:-0.605639877723;PAX2:-0.638794681525;CDX1,2,4:-0.658249985622;BACH2:-0.659069658586;TEF:-0.758658688536;ZIC1..3:-0.762408056847;POU1F1:-0.796077459574;UFEwm:-0.823513542364;ZNF384:-0.838670906621;OCT4_SOX2{dimer}:-0.854347910888;ARID5B:-0.901161597379;CREB1:-0.909129114257;RFX1:-0.944208063095;ALX4:-0.946306981477;EVI1:-0.960999450163;NFE2L2:-0.965390661737;FOXP3:-0.966721421673;ELK1,4_GABP{A,B1}:-0.969436746812;HOX{A5,B5}:-0.994909203445;PPARG:-1.02800001516;HIF1A:-1.03588163929;AIRE:-1.04156359446;YY1:-1.10380680944;POU3F1..4:-1.13571738598;HSF1,2:-1.16693004659;EN1,2:-1.17126061638;TAL1_TCF{3,4,12}:-1.23295178997;NANOG{mouse}:-1.24130219517;NFE2L1:-1.36802832902;MYB:-1.37234256327;ZBTB16:-1.64308490792;HOX{A4,D4}:-1.72809584046;HOXA9_MEIS1:-1.83803648027;STAT5{A,B}:-1.93591357471;NKX3-1:-1.98602828311;PAX8:-2.09758347476;PAX4:-2.31118595141
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10014-101C5;search_select_hide=table117:FF:10014-101C5
 }}

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FF:10014-101C5: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 12:14, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0