FF:11887-125D6: Difference between revisions

Latest revision as of 18:26, 4 June 2020

Name:	CD14+ monocytes - treated with Cryptococcus, donor3
Species:	Human (Homo sapiens)
Library ID:	CNhs13546
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	female
age	21
cell type	monocyte
cell line	NA
company	NA
collaboration	Christine Wells (University of Queensland)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	D5-8
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005991

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13546		CAGE		DRX008146		DRR009018

Accession ID Hg19

Library id		BAM		CTSS
CNhs13546		DRZ000443		DRZ001828

Accession ID Hg38

Library id		BAM		CTSS
CNhs13546		DRZ011793		DRZ013178

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0.41
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.152
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.371
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.466
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.088
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.132
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.722
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.088
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.447
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0.371
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.395
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.406
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.129
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.806
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.088
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.327
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.0442
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.224
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.0427
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0.224
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.887
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0.161
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.836
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.68
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.462
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.849
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.447
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.161
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.672
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.292
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0.948
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.365
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.717
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.642
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.327
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.863
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.279
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.224
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.606
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.0493
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0.224
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.347
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0.224
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0.817
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0.224
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.195
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.161
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.224
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.279
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13546

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	2.65716e-9
MA0003.1	MA0003.1	0.367
MA0004.1	MA0004.1	0.293
MA0006.1	MA0006.1	0.986
MA0007.1	MA0007.1	0.807
MA0009.1	MA0009.1	0.715
MA0014.1	MA0014.1	0.561
MA0017.1	MA0017.1	0.0534
MA0018.2	MA0018.2	0.0317
MA0019.1	MA0019.1	0.988
MA0024.1	MA0024.1	0.00179
MA0025.1	MA0025.1	1.82378e-4
MA0027.1	MA0027.1	0.818
MA0028.1	MA0028.1	0.664
MA0029.1	MA0029.1	0.276
MA0030.1	MA0030.1	0.609
MA0031.1	MA0031.1	0.775
MA0035.2	MA0035.2	0.364
MA0038.1	MA0038.1	0.377
MA0039.2	MA0039.2	0.812
MA0040.1	MA0040.1	0.219
MA0041.1	MA0041.1	0.426
MA0042.1	MA0042.1	0.572
MA0043.1	MA0043.1	3.73339e-7
MA0046.1	MA0046.1	0.0226
MA0047.2	MA0047.2	0.914
MA0048.1	MA0048.1	0.97
MA0050.1	MA0050.1	1.38239e-4
MA0051.1	MA0051.1	0.0643
MA0052.1	MA0052.1	0.0335
MA0055.1	MA0055.1	0.894
MA0057.1	MA0057.1	0.578
MA0058.1	MA0058.1	0.0899
MA0059.1	MA0059.1	0.166
MA0060.1	MA0060.1	1.12531e-8
MA0061.1	MA0061.1	7.42852e-8
MA0062.2	MA0062.2	0.0526
MA0065.2	MA0065.2	0.00746
MA0066.1	MA0066.1	0.0263
MA0067.1	MA0067.1	1.12029e-5
MA0068.1	MA0068.1	0.873
MA0069.1	MA0069.1	0.761
MA0070.1	MA0070.1	0.0245
MA0071.1	MA0071.1	0.26
MA0072.1	MA0072.1	0.606
MA0073.1	MA0073.1	0.242
MA0074.1	MA0074.1	0.198
MA0076.1	MA0076.1	0.677
MA0077.1	MA0077.1	0.108
MA0078.1	MA0078.1	0.468
MA0079.2	MA0079.2	0.265
MA0080.2	MA0080.2	3.98268e-14
MA0081.1	MA0081.1	1.93025e-4
MA0083.1	MA0083.1	0.645
MA0084.1	MA0084.1	0.775
MA0087.1	MA0087.1	0.75
MA0088.1	MA0088.1	0.846
MA0090.1	MA0090.1	0.237
MA0091.1	MA0091.1	0.672
MA0092.1	MA0092.1	0.286
MA0093.1	MA0093.1	0.289
MA0099.2	MA0099.2	1.04062e-41
MA0100.1	MA0100.1	0.853
MA0101.1	MA0101.1	1.15574e-7
MA0102.2	MA0102.2	3.36993e-8
MA0103.1	MA0103.1	0.143
MA0104.2	MA0104.2	0.449
MA0105.1	MA0105.1	1.95931e-11
MA0106.1	MA0106.1	0.816
MA0107.1	MA0107.1	9.60169e-10
MA0108.2	MA0108.2	0.335
MA0111.1	MA0111.1	0.471
MA0112.2	MA0112.2	3.64364e-5
MA0113.1	MA0113.1	0.75
MA0114.1	MA0114.1	0.138
MA0115.1	MA0115.1	0.85
MA0116.1	MA0116.1	2.48927e-4
MA0117.1	MA0117.1	0.0682
MA0119.1	MA0119.1	0.31
MA0122.1	MA0122.1	0.658
MA0124.1	MA0124.1	0.41
MA0125.1	MA0125.1	0.275
MA0131.1	MA0131.1	0.509
MA0135.1	MA0135.1	0.935
MA0136.1	MA0136.1	3.26574e-17
MA0137.2	MA0137.2	0.135
MA0138.2	MA0138.2	0.711
MA0139.1	MA0139.1	0.997
MA0140.1	MA0140.1	0.37
MA0141.1	MA0141.1	0.0881
MA0142.1	MA0142.1	0.451
MA0143.1	MA0143.1	0.638
MA0144.1	MA0144.1	0.0894
MA0145.1	MA0145.1	0.33
MA0146.1	MA0146.1	0.21
MA0147.1	MA0147.1	0.558
MA0148.1	MA0148.1	0.991
MA0149.1	MA0149.1	0.149
MA0150.1	MA0150.1	3.12296e-19
MA0152.1	MA0152.1	0.983
MA0153.1	MA0153.1	0.00326
MA0154.1	MA0154.1	7.11656e-4
MA0155.1	MA0155.1	0.745
MA0156.1	MA0156.1	9.31238e-11
MA0157.1	MA0157.1	0.687
MA0159.1	MA0159.1	0.00624
MA0160.1	MA0160.1	0.0283
MA0162.1	MA0162.1	0.859
MA0163.1	MA0163.1	1.15909e-7
MA0164.1	MA0164.1	0.703
MA0258.1	MA0258.1	0.0054
MA0259.1	MA0259.1	0.759

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13546

Novel motif	Logo	P-value
1	1	0.0877
10	10	0.021
100	100	0.761
101	101	0.971
102	102	0.786
103	103	0.229
104	104	0.577
105	105	0.185
106	106	0.00216
107	107	0.321
108	108	0.762
109	109	0.194
11	11	0.145
110	110	0.201
111	111	0.0638
112	112	0.316
113	113	0.554
114	114	0.0196
115	115	0.122
116	116	0.85
117	117	0.0577
118	118	0.184
119	119	0.148
12	12	0.304
120	120	0.361
121	121	0.472
122	122	0.588
123	123	0.44
124	124	0.715
125	125	0.428
126	126	0.172
127	127	0.362
128	128	0.0445
129	129	0.373
13	13	0.127
130	130	0.378
131	131	0.691
132	132	0.0603
133	133	0.964
134	134	0.539
135	135	0.305
136	136	0.89
137	137	0.00743
138	138	0.347
139	139	0.0474
14	14	0.583
140	140	0.216
141	141	0.309
142	142	0.516
143	143	0.0164
144	144	0.622
145	145	0.535
146	146	0.606
147	147	0.524
148	148	0.0185
149	149	0.837
15	15	0.14
150	150	0.496
151	151	0.425
152	152	0.241
153	153	0.504
154	154	0.76
155	155	0.706
156	156	0.517
157	157	0.562
158	158	0.0562
159	159	0.116
16	16	0.317
160	160	0.523
161	161	0.47
162	162	0.226
163	163	0.25
164	164	0.151
165	165	0.164
166	166	0.584
167	167	0.23
168	168	0.15
169	169	0.00779
17	17	0.242
18	18	0.123
19	19	0.342
2	2	0.744
20	20	0.318
21	21	0.614
22	22	0.231
23	23	0.0647
24	24	0.304
25	25	0.308
26	26	0.0504
27	27	0.856
28	28	0.388
29	29	0.272
3	3	0.143
30	30	0.523
31	31	0.79
32	32	0.618
33	33	0.282
34	34	0.579
35	35	0.137
36	36	0.0987
37	37	0.0634
38	38	0.365
39	39	0.789
4	4	0.817
40	40	0.202
41	41	0.0104
42	42	0.371
43	43	0.0321
44	44	0.934
45	45	0.7
46	46	0.164
47	47	0.477
48	48	0.464
49	49	0.126
5	5	0.236
50	50	0.913
51	51	0.412
52	52	0.373
53	53	0.453
54	54	0.356
55	55	0.63
56	56	0.712
57	57	0.928
58	58	0.125
59	59	0.178
6	6	0.619
60	60	0.0512
61	61	0.571
62	62	0.0532
63	63	0.566
64	64	0.437
65	65	0.233
66	66	0.41
67	67	0.395
68	68	0.553
69	69	0.633
7	7	0.22
70	70	0.0325
71	71	0.0218
72	72	0.257
73	73	0.148
74	74	0.0721
75	75	0.0884
76	76	0.204
77	77	0.483
78	78	0.131
79	79	0.764
8	8	0.4
80	80	0.101
81	81	0.34
82	82	0.141
83	83	0.0612
84	84	0.401
85	85	0.0221
86	86	0.058
87	87	0.294
88	88	0.628
89	89	0.166
9	9	0.366
90	90	0.085
91	91	0.362
92	92	0.208
93	93	0.173
94	94	0.0465
95	95	0.369
96	96	0.392
97	97	0.786
98	98	0.149
99	99	0.0743

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13546

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011105 human CD14-positive monocytes - treated with Cryptococcus sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000634 (Cryptococcus treatment sample)
0011105 (human CD14-positive monocytes - treated with Cryptococcus sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004765,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405,UBERON:0003081,UBERON:0006603,UBERON:0003061
+|DRA_sample_Accession=CAGE@SAMD00005991
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000839,CL:0000548,CL:0002194,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000766,CL:0000219,CL:0000004,CL:0000134,CL:0000738,CL:0002087,CL:0000255,CL:0002031,CL:0000576,CL:0000037,CL:0000860,CL:0000566,CL:0000049,CL:0000557,CL:0000837,CL:0002057,CL:0002009,CL:0000040,CL:0000559
+|accession_numbers=CAGE;DRX008146;DRR009018;DRZ000443;DRZ001828;DRZ011793;DRZ013178
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000625,FF:0000350,FF:0000634,FF:0011105
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.09!1215.98!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.71!515.29!SPI1;;chr7:115670804..115670825,-!p1@TFEC!2.65!447.20!TFEC;;chr10:64576105..64576133,-!p1@EGR2!2.29!384.95!EGR2;;chr12:54778471..54778528,-!p1@ZNF385A!2.16!144.05!ZNF385A;;chr16:85932760..85932775,+!p1@IRF8!2.11!128.32!IRF8;;chr6:106534192..106534224,+!p1@PRDM1!1.98!253.26!PRDM1;;chr10:35484053..35484076,+!p1@CREM!1.98!229.44!CREM;;chr21:34442439..34442455,+!p1@OLIG1!1.98!93.48!OLIG1;;chr11:47400062..47400077,-!p2@SPI1!1.91!80.45!SPI1;;chr11:47399947..47399961,-!p3@SPI1!1.88!75.73!SPI1;;chr2:70142232..70142251,+!p1@MXD1!1.87!386.52!MXD1;;chr10:31288398..31288455,-!p2@ZNF438!1.83!77.98!ZNF438;;chr20:39317868..39317884,-!p1@MAFB!1.81!709.68!MAFB;;chr19:45971246..45971265,+!p1@FOSB!1.76!995.30!FOSB;;chr2:145277640..145277771,-!p1@ZEB2!1.71!635.29!ZEB2;;chr3:12330560..12330579,+!p1@PPARG!1.71!57.98!PPARG;;chr1:25256756..25256774,-!p1@RUNX3!1.70!90.79!RUNX3;;chr21:34398234..34398250,+!p1@OLIG2!1.70!48.76!OLIG2;;chr6:106534230..106534254,+!p2@PRDM1!1.68!114.83!PRDM1;;chr10:31288370..31288393,-!p3@ZNF438!1.68!47.42!ZNF438;;chr10:51572408..51572454,+!p3@NCOA4!1.66!251.47!NCOA4;;chr16:31885093..31885165,+!p1@ZNF267!1.63!602.48!ZNF267;;chr14:35872453..35872485,-!p2@NFKBIA!1.61!95.28!NFKBIA;;chr11:47400032..47400043,-!p5@SPI1!1.60!38.65!SPI1;;chr21:30671690..30671762,+!p2@BACH1!1.59!125.62!BACH1;;chr2:157189180..157189290,-!p1@NR4A2!1.58!185.17!NR4A2;;chr10:51572339..51572376,+!p4@NCOA4!1.58!82.02!NCOA4;;chr10:104155659..104155676,+!p4@NFKB2!1.58!45.39!NFKB2;;chr11:47399996..47400014,-!p4@SPI1!1.57!36.18!SPI1;;chr12:52445218..52445237,+!p1@NR4A1!1.54!408.32!NR4A1;;chr19:50432132..50432217,+!p2@ATF5!1.54!39.55!ATF5;;chr1:212782094..212782109,+!p1@ATF3!1.53!843.84!ATF3;;chr2:68592394..68592405,+!p2@PLEK!1.53!33.03!PLEK;;chr7:50344289..50344323,+!p1@IKZF1!1.51!31.01!IKZF1;;chr12:72056800..72056834,+!p1@THAP2!1.49!39.78!THAP2;;chr13:41593425..41593480,-!p1@ELF1!1.47!175.96!ELF1;;chr10:64018918..64018936,+!p2@ZNF365!1.47!28.76!ZNF365;;chr6:44233252..44233296,-!p1@NFKBIE!1.44!251.02!NFKBIE;;chr2:145275162..145275202,-!p2@ZEB2!1.44!150.12!ZEB2;;chr8:22550982..22550999,-!p1@EGR3!1.43!71.91!EGR3;;chr20:48599506..48599526,+!p1@SNAI1!1.42!156.18!SNAI1;;chr10:35484090..35484104,+!p6@CREM!1.42!25.17!CREM;;chr14:35873947..35873965,-!p1@NFKBIA!1.40!1471.71!NFKBIA;;chr4:106068026..106068084,+!p1@TET2!1.39!204.27!TET2;;chr2:61108695..61108753,+!p1@REL!1.38!154.16!REL;;chr12:54778351..54778378,-!p6@ZNF385A!1.38!23.15!ZNF385A;;chr21:30671235..30671253,+!p1@BACH1!1.36!272.14!BACH1;;chr9:102584159..102584174,+!p2@NR4A3!1.36!39.10!NR4A3;;chr21:36260295..36260310,-!p3@RUNX1!1.36!35.06!RUNX1;;chr11:47400045..47400060,-!p6@SPI1!1.36!22.02!SPI1;;chr6:15246200..15246214,+!p2@JARID2!1.33!54.83!JARID2;;chr3:12329397..12329433,+!p2@PPARG!1.33!45.62!PPARG;;chr9:102584262..102584276,+!p1@NR4A3!1.33!45.17!NR4A3;;chr10:31288329..31288353,-!p7@ZNF438!1.33!20.45!ZNF438;;chr10:104154246..104154347,+!p3@NFKB2!1.32!119.55!NFKB2;;chr14:35872962..35873025,-!p3@NFKBIA!1.31!48.76!NFKBIA;;chr19:36391434..36391450,-!p1@NFKBID!1.31!37.98!NFKBID;;chrX:153305787..153305807,-!p3@MECP2!1.30!18.88!MECP2;;chr18:3449720..3449749,+!p2@TGIF1!1.29!38.88!TGIF1;;chr3:101546827..101546847,+!p2@NFKBIZ!1.29!25.62!NFKBIZ;;chr6:144385698..144385742,-!p2@PLAGL1!1.29!22.25!PLAGL1;;chr8:53373491..53373506,-!p4@ST18!1.29!18.43!ST18;;chr21:30672433..30672464,+!p6@BACH1!1.29!18.43!BACH1;;chr4:103422499..103422632,+!p1@NFKB1!1.28!364.73!NFKB1;;chr2:145277882..145277967,-!p3@ZEB2!1.28!30.79!ZEB2;;chr12:48298765..48298783,-!p2@VDR!1.27!36.18!VDR;;chr20:48807351..48807384,+!p1@CEBPB!1.26!1723.63!CEBPB;;chr7:115670792..115670797,-!p2@TFEC!1.26!17.08!TFEC;;chr10:104155480..104155534,+!p2@NFKB2!1.25!106.97!NFKB2;;chr8:80679993..80680011,-!p1@HEY1!1.25!24.27!HEY1;;chr12:72056773..72056796,+!p3@THAP2!1.25!22.02!THAP2;;chr19:45251395..45251432,+!p8@BCL3!1.25!16.85!BCL3;;chr22:38597987..38598021,+!p2@MAFF!1.24!97.75!MAFF;;chr2:70314240..70314256,+!p4@PCBP1!1.24!33.93!PCBP1;;chr2:61108808..61108821,+!p3@REL!1.24!20.45!REL;;chr12:72056749..72056767,+!p6@THAP2!1.24!18.20!THAP2;;chr11:47399920..47399931,-!p7@SPI1!1.23!15.96!SPI1;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.23!15.96!ZBED1;;chr19:54041669..54041697,+!p2@ZNF331!1.21!15.06!ZNF331;;chr1:37940170..37940190,+!p1@ZC3H12A!1.20!178.88!ZC3H12A;;chr12:96588219..96588263,+!p2@ELK3!1.19!103.37!ELK3;;chr10:35484804..35484902,+!p2@CREM!1.19!54.83!CREM;;chr3:170075436..170075520,+!p1@SKIL!1.18!301.80!SKIL;;chr9:102584128..102584144,+!p3@NR4A3!1.18!26.74!NR4A3;;chr12:11802753..11802834,+!p2@ETV6!1.17!67.19!ETV6;;chr19:54058073..54058088,+!p1@ZNF331!1.17!13.93!ZNF331;;chr1:157108130..157108173,-!p1@ETV3!1.16!95.96!ETV3;;chr21:36421535..36421610,-!p2@RUNX1!1.16!47.42!RUNX1;;chr2:97202480..97202499,+!p1@ARID5A!1.15!133.26!ARID5A;;chr19:13213662..13213686,-!p1@LYL1!1.15!19.55!LYL1;;chr1:38325227..38325246,-!p2@MTF1!1.15!17.75!MTF1;;chr14:35872494..35872511,-!p5@NFKBIA!1.15!17.53!NFKBIA;;chr9:129567282..129567353,+!p1@ZBTB43!1.14!164.95!ZBTB43;;chrX:129244454..129244488,-!p1@ELF4!1.14!91.24!ELF4;;chr4:103423079..103423112,+!p4@NFKB1!1.14!12.81!NFKB1;;chr18:3449618..3449634,+!p13@TGIF1!1.12!15.06!TGIF1;;chr6:106535598..106535637,+!p7@PRDM1!1.12!12.14!PRDM1;;chr19:45252008..45252024,+!p2@BCL3!1.11!38.88!BCL3;;chr17:38497662..38497713,+!p4@RARA!1.11!13.71!RARA;;chr5:88178983..88179012,-!p1@MEF2C!1.10!88.77!MEF2C;;chr12:96588279..96588299,+!p4@ELK3!1.10!55.51!ELK3;;chr21:34442540..34442560,+!p2@OLIG1!1.10!11.69!OLIG1;;chr2:231090471..231090504,+!p2@SP140!1.10!11.69!SP140;;chr2:238600998..238601013,+!p5@LRRFIP1!1.10!11.46!LRRFIP1;;chr7:17338266..17338282,+!p1@AHR!1.09!122.25!AHR;;chr2:238600933..238600985,+!p3@LRRFIP1!1.09!62.25!LRRFIP1;;chr6:12012249..12012266,+!p5@HIVEP1!1.09!19.78!HIVEP1;;chr12:48298785..48298828,-!p1@VDR!1.08!58.20!VDR;;chr6:12012170..12012245,+!p1@HIVEP1!1.07!54.16!HIVEP1;;chr19:45250948..45250998,+!p3@BCL3!1.06!26.52!BCL3;;chr2:231280954..231280965,+!p2@SP100!1.06!19.33!SP100;;chr18:3449586..3449617,+!p8@TGIF1!1.06!17.08!TGIF1;;chr2:61108771..61108789,+!p4@REL!1.06!16.18!REL;;chr7:106809470..106809481,+!p2@HBP1!1.06!14.83!HBP1;;chr19:33793430..33793447,-!p1@CEBPA!1.05!44.05!CEBPA;;chr10:35416142..35416169,+!p3@CREM!1.05!27.64!CREM;;chr8:72756063..72756125,-!p1@MSC!1.05!20.90!MSC;;chr20:48807615..48807644,+!p6@CEBPB!1.05!17.30!CEBPB;;chr14:64971014..64971044,+!p4@ZBTB1!1.05!17.08!ZBTB1;;chr18:3449695..3449712,+!p9@TGIF1!1.05!15.96!TGIF1;;chr9:110252035..110252057,-!p1@KLF4!1.04!160.23!KLF4;;chr2:192015701..192015743,-!p1@STAT4!1.04!13.93!STAT4;;chr2:145275228..145275241,-!p11@ZEB2!1.04!12.14!ZEB2;;chr13:41635029..41635044,-!p4@ELF1!1.03!20.90!ELF1;;chr19:19496539..19496576,+!p8@GATAD2A!1.03!17.30!GATAD2A;;chr2:28618532..28618610,+!p4@FOSL2!1.03!16.63!FOSL2;;chr2:28615716..28615733,+!p1@FOSL2!1.02!460.01!FOSL2;;chr2:208394817..208394834,+!p3@CREB1!1.02!39.10!CREB1;;chr20:48807648..48807671,+!p9@CEBPB!1.02!13.93!CEBPB;;chr12:96588368..96588394,+!p3@ELK3!1.01!25.39!ELK3;;chr6:391743..391759,+!p1@IRF4!1.01!9.21!IRF4;;chr11:65430554..65430579,-!p3@RELA!1.00!23.15!RELA;;chr7:128577972..128578047,+!p1@IRF5!1.00!14.38!IRF5;;chr10:104155680..104155687,+!p6@NFKB2!0.99!8.76!NFKB2;;chr19:12902289..12902307,+!p1@JUNB!0.98!1984.98!JUNB;;chr20:48807456..48807475,+!p3@CEBPB!0.98!16.85!CEBPB;;chr2:70167296..70167306,+!p3@MXD1!0.98!13.26!MXD1;;chr14:75745523..75745537,+!p1@FOS!0.97!1020.02!FOS;;chr1:212738742..212738755,+!p2@ATF3!0.97!8.31!ATF3;;chr2:70142189..70142223,+!p2@MXD1!0.96!60.00!MXD1;;chr7:17338324..17338341,+!p3@AHR!0.96!28.09!AHR;;chr5:142782823..142782854,-!p3@NR3C1!0.96!11.91!NR3C1;;chr7:111846777..111846804,+!p2@ZNF277!0.96!9.66!ZNF277;;chr12:57914286..57914304,-!p1@DDIT3!0.95!295.29!DDIT3;;chr11:615942..615957,-!p1@IRF7!0.95!76.63!IRF7;;chr3:39195037..39195069,-!p2@CSRNP1!0.95!50.34!CSRNP1;;chrX:129244430..129244442,-!p5@ELF4!0.95!7.87!ELF4;;chr1:156470515..156470542,-!p2@MEF2D!0.94!41.57!MEF2D;;chr1:161736038..161736056,+!p4@ATF6!0.93!17.98!ATF6;;chr7:99156393..99156433,+!p6@ZNF655!0.93!17.30!ZNF655;;chr18:3448455..3448480,+!p5@TGIF1!0.93!14.16!TGIF1;;chr4:83822199..83822239,+!p2@THAP9!0.93!8.99!THAP9;;chr21:30673091..30673135,+!p7@BACH1!0.93!7.42!BACH1;;chr3:101568349..101568365,+!p1@NFKBIZ!0.92!396.19!NFKBIZ;;chr9:88969303..88969335,-!p1@ZCCHC6!0.92!71.46!ZCCHC6;;chr2:185463247..185463263,+!p1@ZNF804A!0.91!12.81!ZNF804A;;chr3:126191157..126191171,-!p4@ZXDC!0.91!7.19!ZXDC;;chr10:104155455..104155479,+!p1@NFKB2!0.90!106.07!NFKB2;;chr6:12011943..12012015,+!p2@HIVEP1!0.90!23.37!HIVEP1;;chr8:116681123..116681143,-!p4@TRPS1!0.90!13.71!TRPS1;;chr14:35872926..35872951,-!p4@NFKBIA!0.90!9.89!NFKBIA;;chr13:41593392..41593403,-!p7@ELF1!0.90!6.97!ELF1;;chr6:15246261..15246312,+!p1@JARID2!0.89!173.94!JARID2;;chr9:102584241..102584261,+!p4@NR4A3!0.89!10.79!NR4A3;;chr8:81397846..81397860,+!p3@ZBTB10!0.89!8.54!ZBTB10;;chr9:102584278..102584285,+!p5@NR4A3!0.89!6.74!NR4A3;;chr2:70167033..70167069,+!p11@MXD1!0.89!6.74!MXD1;;chr4:103446567..103446592,+!p15@NFKB1!0.89!6.74!NFKB1;;chr6:20403916..20403965,+!p3@E2F3!0.88!31.46!E2F3;;chr4:185395633..185395651,-!p2@IRF2!0.88!10.79!IRF2;;chr2:145277589..145277612,-!p12@ZEB2!0.88!6.52!ZEB2;;chr19:50432104..50432126,+!p6@ATF5!0.88!6.52!ATF5;;chr1:25256439..25256476,-!p3@RUNX3!0.88!6.52!RUNX3;;chr9:88969339..88969422,-!p2@ZCCHC6!0.87!52.59!ZCCHC6;;chr17:38498594..38498661,+!p2@RARA!0.87!22.70!RARA;;chr18:3449527..3449582,+!p6@TGIF1!0.87!12.58!TGIF1;;chr19:45254529..45254561,+!p10@BCL3!0.87!8.76!BCL3;;chr4:87857474..87857489,+!p7@AFF1!0.86!11.24!AFF1;;chr2:145275211..145275220,-!p14@ZEB2!0.86!7.64!ZEB2;;chr14:35872414..35872425,-!p7@NFKBIA!0.86!6.97!NFKBIA;;chr10:104154415..104154434,+!p5@NFKB2!0.86!6.29!NFKB2;;chr2:231090433..231090469,+!p1@SP140!0.86!6.29!SP140;;chr4:26322616..26322652,+!p1@RBPJ!0.85!140.00!RBPJ;;chr8:72756267..72756296,-!p4@MSC!0.85!9.21!MSC;;chr1:25291620..25291635,-!p4@RU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KB1!0.28!0.90!NFKB1;;chr19:54041467..54041479,+!p13@ZNF331!0.28!0.90!ZNF331;;chr1:158985686..158985719,+!p15@IFI16!0.28!0.90!IFI16;;chr1:173837572..173837581,+!p3@ZBTB37!0.28!0.90!ZBTB37;;chr1:212873084..212873137,-!p2@BATF3!0.28!0.90!BATF3;;chr1:2234717..2234744,+!p4@SKI!0.28!0.90!SKI;;chr1:59250262..59250296,-!p5@JUN!0.28!0.90!JUN;;chr1:61869752..61869782,+!p13@NFIA!0.28!0.90!NFIA;;chr5:142814347..142814358,-!p27@NR3C1!0.28!0.90!NR3C1;;chr6:106535874..106535878,+!p12@PRDM1!0.28!0.90!PRDM1;;chr6:28226984..28227005,-!p4@ZKSCAN4!0.28!0.90!ZKSCAN4;;chr7:101460882..101460923,+!p5@CUX1!0.28!0.90!CUX1;;chr8:144512897..144512903,-!p1@MAFA!0.28!0.90!MAFA;;chr8:72756522..72756533,-!p13@MSC!0.28!0.90!MSC;;chr8:81787006..81787031,-!p2@ZNF704!0.28!0.90!ZNF704;;chr9:117138946..117138968,-!p4@AKNA!0.28!0.90!AKNA;;chr9:117139023..117139030,-!p5@AKNA!0.28!0.90!AKNA;;chr14:75746579..75746605,+!p9@FOS!0.28!0.90!FOS;;chr14:75746781..75746799,+!p6@FOS!0.28!0.90!FOS;;chr16:1429010..1429038,-!p5@UNKL!0.28!0.90!UNKL;;chr17:40440446..40440464,+!p5@STAT5A!0.28!0.90!STAT5A;;chr18:53177984..53178004,-!p17@TCF4!0.28!0.90!TCF4;;chr19:13213691..13213696,-!p9@LYL1!0.28!0.90!LYL1;;chr10:3823938..3823954,-!p13@KLF6!0.28!0.90!KLF6;;chr11:67007760..67007773,+!p17@KDM2A!0.28!0.90!KDM2A;;chr12:52448293..52448318,+!p10@NR4A1!0.28!0.90!NR4A1;;chr12:57911081..57911085,-!p2@DDIT3!0.28!0.90!DDIT3;;chr14:23588458..23588473,-!p2@CEBPE!0.28!0.90!CEBPE;;chr14:35874125..35874149,-!p11@NFKBIA!0.28!0.90!NFKBIA;;chr16:89939979..89940011,+!p2@TCF25!0.27!65.62!TCF25;;chr6:44355423..44355470,+!p1@CDC5L!0.27!60.23!CDC5L;;chr7:1570322..1570360,+!p1@MAFK!0.27!13.71!MAFK;;chr12:48744642..48744733,-!p1@ZNF641!0.27!10.79!ZNF641;;chr6:28092375..28092412,+!p1@ZSCAN16!0.27!6.29!ZSCAN16;;chr19:926001..926046,+!p1@ARID3A!0.27!5.17!ARID3A;;chr3:63897742..63897797,+!p2@ATXN7!0.27!4.94!ATXN7;;chr1:161736125..161736136,+!p5@ATF6!0.27!3.60!ATF6;;chr15:74833584..74833626,+!p1@ARID3B!0.27!3.15!ARID3B;;chr1:6845562..6845571,+!p3@CAMTA1!0.27!2.70!CAMTA1;;chr5:43065197..43065244,+!p5@ZNF131!0.27!2.47!ZNF131;;chr15:31619871..31619884,+!p8@KLF13!0.27!2.02!KLF13;;chr6:45390442..45390479,+!p8@RUNX2!0.27!1.80!RUNX2;;chr4:26321361..26321377,+!p6@RBPJ!0.27!1.35!RBPJ;;chr2:231084820..231084836,-!p5@SP110!0.27!1.12!SP110;;chr4:81105027..81105039,+!p3@PRDM8!0.27!1.12!PRDM8;;chr20:44600785..44600794,-!p7@ZNF335!0.27!1.12!ZNF335;;chr10:3824229..3824253,-!p7@KLF6!0.27!1.12!KLF6;;chr6:34204921..34204939,+!p3@HMGA1!0.26!49.89!HMGA1;;chr1:90460661..90460745,+!p1@ZNF326!0.26!46.07!ZNF326;;chr21:43430440..43430485,-!p1@ZNF295!0.26!22.02!ZNF295;;chr1:247095194..247095235,-!p1@AHCTF1!0.26!17.08!AHCTF1;;chr19:52408257..52408278,-!p1@ZNF649!0.26!10.11!ZNF649;;chr7:77428066..77428132,+!p2@PHTF2!0.26!10.11!PHTF2;;chr1:59249688..59249703,-!p3@JUN!0.26!9.21!JUN;;chr19:53836985..53837024,+!p1@ZNF845!0.26!7.42!ZNF845;;chr18:72922811..72922827,+!p1@TSHZ1!0.26!7.42!TSHZ1;;chr7:21467674..21467727,+!p1@SP4!0.26!5.84!SP4;;chrX:46404811..46404869,-!p1@ZNF674!0.26!5.39!ZNF674;;chr1:23694794..23694863,-!p1@ZNF436!0.26!4.94!ZNF436;;chr19:45251805..45251840,+!p4@BCL3!0.26!4.49!BCL3;;chr12:133758115..133758138,+!p3@ZNF268!0.26!3.15!ZNF268;;chr17:36861735..36861755,+!p4@MLLT6!0.26!2.02!MLLT6;;chr20:52185447..52185462,-!p2@ZNF217!0.26!1.80!ZNF217;;chr22:38598042..38598052,+!p4@MAFF!0.26!1.80!MAFF;;chr16:67063142..67063153,+!p4@CBFB!0.26!1.57!CBFB;;chr12:46123519..46123529,+!p4@ARID2!0.26!1.35!ARID2;;
+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
+|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 42: @@
 |fonse_treatment_closure=FF:0000625,FF:0000634,FF:0011105,FF:11887-125D6
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Cryptococcus%252c%2520donor3.CNhs13546.11887-125D6.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Cryptococcus%252c%2520donor3.CNhs13546.11887-125D6.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Cryptococcus%252c%2520donor3.CNhs13546.11887-125D6.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Cryptococcus%252c%2520donor3.CNhs13546.11887-125D6.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Cryptococcus%252c%2520donor3.CNhs13546.11887-125D6.hg38.nobarcode.ctss.bed.gz
 |id=FF:11887-125D6
 |is_a=EFO:0002091;;FF:0011105
 |is_obsolete=
+|library_id=CNhs13546
+|library_id_phase_based=2:CNhs13546
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11887
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11887
 |name=CD14+ monocytes - treated with Cryptococcus, donor3
 |namespace=
@@ Line 44: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13546,LSID1029,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=125
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@@ Line 59: / Line 79: @@
 |rna_weight_ug=1.607445
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+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 80: / Line 101: @@
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 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11887-125D6;search_select_hide=table117:FF:11887-125D6
 }}

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FF:11887-125D6: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:26, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0