FF:11872-125B9: Difference between revisions

Latest revision as of 18:25, 4 June 2020

Name:	CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor2
Species:	Human (Homo sapiens)
Library ID:	CNhs13483
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	male
age	51
cell type	monocyte
cell line	NA
company	NA
collaboration	Christine Wells (University of Queensland)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	D4-3
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005981

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13483		CAGE		DRX008157		DRR009029

Accession ID Hg19

Library id		BAM		CTSS
CNhs13483		DRZ000454		DRZ001839

Accession ID Hg38

Library id		BAM		CTSS
CNhs13483		DRZ011804		DRZ013189

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0.489
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	0.0798
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.755
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.47
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.182
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.31
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.798
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.31
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.489
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0.31
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0.31
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.476
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.411
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.366
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.946
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.31
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.31
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.327
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.31
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.218
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0.783
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.759
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	1.193
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0.837
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.667
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.568
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.947
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.531
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.409
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.57
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	1.077
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0.409
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.409
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.734
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0.746
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.182
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.714
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.31
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.182
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.616
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0.182
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.391
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0.182
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0.919
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0.828
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.182
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.182
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.182
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.182
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13483

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	3.87615e-5
MA0003.1	MA0003.1	0.78
MA0004.1	MA0004.1	0.232
MA0006.1	MA0006.1	0.626
MA0007.1	MA0007.1	0.7
MA0009.1	MA0009.1	0.128
MA0014.1	MA0014.1	0.958
MA0017.1	MA0017.1	0.0744
MA0018.2	MA0018.2	0.141
MA0019.1	MA0019.1	0.41
MA0024.1	MA0024.1	0.00173
MA0025.1	MA0025.1	0.0611
MA0027.1	MA0027.1	0.773
MA0028.1	MA0028.1	0.0692
MA0029.1	MA0029.1	0.129
MA0030.1	MA0030.1	0.0744
MA0031.1	MA0031.1	0.251
MA0035.2	MA0035.2	0.129
MA0038.1	MA0038.1	0.0895
MA0039.2	MA0039.2	0.592
MA0040.1	MA0040.1	0.755
MA0041.1	MA0041.1	0.125
MA0042.1	MA0042.1	0.191
MA0043.1	MA0043.1	1.77989e-5
MA0046.1	MA0046.1	0.014
MA0047.2	MA0047.2	0.678
MA0048.1	MA0048.1	0.659
MA0050.1	MA0050.1	3.12574e-18
MA0051.1	MA0051.1	2.6217e-10
MA0052.1	MA0052.1	0.151
MA0055.1	MA0055.1	0.871
MA0057.1	MA0057.1	0.585
MA0058.1	MA0058.1	0.0827
MA0059.1	MA0059.1	0.135
MA0060.1	MA0060.1	1.37103e-9
MA0061.1	MA0061.1	1.94552e-6
MA0062.2	MA0062.2	0.91
MA0065.2	MA0065.2	0.0172
MA0066.1	MA0066.1	0.0504
MA0067.1	MA0067.1	3.32874e-6
MA0068.1	MA0068.1	0.12
MA0069.1	MA0069.1	0.699
MA0070.1	MA0070.1	0.023
MA0071.1	MA0071.1	0.41
MA0072.1	MA0072.1	0.993
MA0073.1	MA0073.1	0.59
MA0074.1	MA0074.1	0.192
MA0076.1	MA0076.1	0.0692
MA0077.1	MA0077.1	0.158
MA0078.1	MA0078.1	0.554
MA0079.2	MA0079.2	0.207
MA0080.2	MA0080.2	6.91083e-13
MA0081.1	MA0081.1	6.77685e-4
MA0083.1	MA0083.1	0.604
MA0084.1	MA0084.1	0.639
MA0087.1	MA0087.1	0.571
MA0088.1	MA0088.1	0.559
MA0090.1	MA0090.1	0.335
MA0091.1	MA0091.1	0.547
MA0092.1	MA0092.1	0.335
MA0093.1	MA0093.1	0.277
MA0099.2	MA0099.2	6.84828e-42
MA0100.1	MA0100.1	0.734
MA0101.1	MA0101.1	4.3414e-5
MA0102.2	MA0102.2	2.30064e-6
MA0103.1	MA0103.1	0.278
MA0104.2	MA0104.2	0.327
MA0105.1	MA0105.1	3.36054e-11
MA0106.1	MA0106.1	0.871
MA0107.1	MA0107.1	6.87442e-6
MA0108.2	MA0108.2	0.0751
MA0111.1	MA0111.1	0.565
MA0112.2	MA0112.2	4.67695e-5
MA0113.1	MA0113.1	0.754
MA0114.1	MA0114.1	0.197
MA0115.1	MA0115.1	0.789
MA0116.1	MA0116.1	5.39579e-4
MA0117.1	MA0117.1	0.0917
MA0119.1	MA0119.1	0.178
MA0122.1	MA0122.1	0.971
MA0124.1	MA0124.1	0.622
MA0125.1	MA0125.1	0.34
MA0131.1	MA0131.1	0.417
MA0135.1	MA0135.1	0.43
MA0136.1	MA0136.1	2.54322e-12
MA0137.2	MA0137.2	7.6169e-10
MA0138.2	MA0138.2	0.446
MA0139.1	MA0139.1	0.715
MA0140.1	MA0140.1	0.204
MA0141.1	MA0141.1	0.165
MA0142.1	MA0142.1	0.735
MA0143.1	MA0143.1	0.955
MA0144.1	MA0144.1	1.46789e-4
MA0145.1	MA0145.1	0.45
MA0146.1	MA0146.1	0.19
MA0147.1	MA0147.1	0.404
MA0148.1	MA0148.1	0.748
MA0149.1	MA0149.1	0.197
MA0150.1	MA0150.1	5.50376e-20
MA0152.1	MA0152.1	0.753
MA0153.1	MA0153.1	0.00511
MA0154.1	MA0154.1	0.00178
MA0155.1	MA0155.1	0.949
MA0156.1	MA0156.1	5.08575e-7
MA0157.1	MA0157.1	0.975
MA0159.1	MA0159.1	0.0321
MA0160.1	MA0160.1	0.0445
MA0162.1	MA0162.1	0.68
MA0163.1	MA0163.1	2.37525e-8
MA0164.1	MA0164.1	0.534
MA0258.1	MA0258.1	0.00311
MA0259.1	MA0259.1	0.947

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13483

Novel motif	Logo	P-value
1	1	0.0749
10	10	0.018
100	100	0.916
101	101	0.836
102	102	0.767
103	103	0.378
104	104	0.609
105	105	0.217
106	106	6.8682e-4
107	107	0.211
108	108	0.94
109	109	0.303
11	11	0.156
110	110	0.134
111	111	0.023
112	112	0.322
113	113	0.43
114	114	0.0118
115	115	0.306
116	116	0.844
117	117	0.0644
118	118	0.166
119	119	0.118
12	12	0.376
120	120	0.708
121	121	0.468
122	122	0.801
123	123	0.0351
124	124	0.749
125	125	0.369
126	126	0.343
127	127	0.436
128	128	0.032
129	129	0.537
13	13	0.106
130	130	0.0767
131	131	0.573
132	132	0.0685
133	133	0.648
134	134	0.612
135	135	0.81
136	136	0.602
137	137	0.0149
138	138	0.153
139	139	0.0309
14	14	0.433
140	140	0.168
141	141	0.288
142	142	0.0968
143	143	0.0477
144	144	0.682
145	145	0.285
146	146	0.577
147	147	0.503
148	148	0.00931
149	149	0.939
15	15	0.169
150	150	0.433
151	151	0.361
152	152	0.232
153	153	0.778
154	154	0.319
155	155	0.732
156	156	0.484
157	157	0.395
158	158	0.0118
159	159	0.667
16	16	0.353
160	160	0.301
161	161	0.403
162	162	0.299
163	163	0.121
164	164	0.0747
165	165	0.147
166	166	0.702
167	167	0.083
168	168	0.381
169	169	0.00817
17	17	0.211
18	18	0.177
19	19	0.383
2	2	0.642
20	20	0.247
21	21	0.421
22	22	0.333
23	23	0.0444
24	24	0.345
25	25	0.394
26	26	0.0566
27	27	0.676
28	28	0.516
29	29	0.233
3	3	0.0959
30	30	0.439
31	31	0.849
32	32	0.813
33	33	0.316
34	34	0.71
35	35	0.17
36	36	0.0742
37	37	0.0775
38	38	0.388
39	39	0.844
4	4	0.944
40	40	0.251
41	41	0.0257
42	42	0.372
43	43	0.0429
44	44	0.993
45	45	0.929
46	46	0.151
47	47	0.502
48	48	0.462
49	49	0.123
5	5	0.276
50	50	0.931
51	51	0.445
52	52	0.394
53	53	0.39
54	54	0.368
55	55	0.41
56	56	0.701
57	57	0.665
58	58	0.122
59	59	0.35
6	6	0.711
60	60	0.0488
61	61	0.621
62	62	0.0637
63	63	0.5
64	64	0.411
65	65	0.23
66	66	0.224
67	67	0.576
68	68	0.927
69	69	0.578
7	7	0.278
70	70	0.0251
71	71	0.0377
72	72	0.211
73	73	0.203
74	74	0.15
75	75	0.124
76	76	0.174
77	77	0.596
78	78	0.108
79	79	0.296
8	8	0.39
80	80	0.493
81	81	0.302
82	82	0.205
83	83	0.0759
84	84	0.364
85	85	0.0195
86	86	0.0568
87	87	0.728
88	88	0.659
89	89	0.368
9	9	0.514
90	90	0.0745
91	91	0.221
92	92	0.211
93	93	0.502
94	94	0.0557
95	95	0.513
96	96	0.46
97	97	0.771
98	98	0.104
99	99	0.0594

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13483

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011444 CD14-positive monocytes - treated with Trehalose dimycolate (TDM) sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000631 (trehalose dimycolate (TDM) treatment sample)
0011444 (CD14-positive monocytes - treated with Trehalose dimycolate (TDM) sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

@@ Line 1: / Line 1: @@
 {{f5samples
-|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000922,UBERON:0002371,UBERON:0001474,UBERON:0002384,UBERON:0000926,UBERON:0000479,UBERON:0000062,UBERON:0004765,UBERON:0004120,UBERON:0000061,UBERON:0000465,UBERON:0000480,UBERON:0000923,UBERON:0002050,UBERON:0005423,UBERON:0000467,UBERON:0001062,UBERON:0005291,UBERON:0006598,UBERON:0002532,UBERON:0002204,UBERON:0001434,UBERON:0002390,UBERON:0002193,UBERON:0002405,UBERON:0003081,UBERON:0006603,UBERON:0003061
+|DRA_sample_Accession=CAGE@SAMD00005981
-|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000144,CL:0000723,CL:0000048,CL:0000988,CL:0000839,CL:0000548,CL:0002194,CL:0000034,CL:0002032,CL:0000763,CL:0000012,CL:0002320,CL:0000063,CL:0002371,CL:0000766,CL:0000219,CL:0000004,CL:0000134,CL:0000738,CL:0002087,CL:0000255,CL:0002031,CL:0000576,CL:0000037,CL:0000860,CL:0000566,CL:0000049,CL:0000557,CL:0000837,CL:0002057,CL:0002009,CL:0000040,CL:0000559
+|accession_numbers=CAGE;DRX008157;DRR009029;DRZ000454;DRZ001839;DRZ011804;DRZ013189
+|ancestors_in_anatomy_facet=
+|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
 |ancestors_in_disease_facet=
+|ancestors_in_ff_facet=FF:0000102,FF:0000210,FF:0000002,FF:0000101,FF:0000001,FF:0000625,FF:0000350,FF:0000631,FF:0011444
 |comment=
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.55!3564.34!PLEK;;chr16:85932760..85932775,+!p1@IRF8!3.08!1191.07!IRF8;;chr11:47400078..47400106,-!p1@SPI1!2.65!447.43!SPI1;;chr10:35484053..35484076,+!p1@CREM!2.58!912.07!CREM;;chr10:64576105..64576133,-!p1@EGR2!2.53!675.32!EGR2;;chr12:54778471..54778528,-!p1@ZNF385A!2.50!311.85!ZNF385A;;chr7:115670804..115670825,-!p1@TFEC!2.31!204.94!TFEC;;chr11:47399947..47399961,-!p3@SPI1!2.18!151.23!SPI1;;chr21:34442439..34442455,+!p1@OLIG1!2.17!147.06!OLIG1;;chr6:106534192..106534224,+!p1@PRDM1!2.09!331.66!PRDM1;;chr7:128577972..128578047,+!p1@IRF5!2.09!188.26!IRF5;;chr11:64764435..64764449,-!p1@BATF2!2.08!163.22!BATF2;;chr20:39317868..39317884,-!p1@MAFB!2.07!1293.80!MAFB;;chr6:36355431..36355466,-!p1@ETV7!2.02!103.78!ETV7;;chr21:36260295..36260310,-!p3@RUNX1!1.98!150.19!RUNX1;;chr17:45810594..45810608,+!p1@TBX21!1.95!87.61!TBX21;;chr5:131826457..131826514,-!p1@IRF1!1.94!3141.93!IRF1;;chr11:47400062..47400077,-!p2@SPI1!1.94!85.52!SPI1;;chr11:47399996..47400014,-!p4@SPI1!1.93!83.44!SPI1;;chr19:45971246..45971265,+!p1@FOSB!1.91!1393.92!FOSB;;chr10:35484090..35484104,+!p6@CREM!1.90!78.74!CREM;;chr16:31885093..31885165,+!p1@ZNF267!1.84!983.00!ZNF267;;chr19:33793430..33793447,-!p1@CEBPA!1.84!273.26!CEBPA;;chr6:106534230..106534254,+!p2@PRDM1!1.84!165.83!PRDM1;;chr1:25256756..25256774,-!p1@RUNX3!1.81!116.81!RUNX3;;chr10:64018918..64018936,+!p2@ZNF365!1.80!62.58!ZNF365;;chr2:68592394..68592405,+!p2@PLEK!1.80!61.53!PLEK;;chr1:221052776..221052799,+!p1@HLX!1.78!103.78!HLX;;chr16:79634624..79634642,-!p1@MAF!1.77!217.46!MAF;;chr19:50432132..50432217,+!p2@ATF5!1.75!65.19!ATF5;;chr12:72056800..72056834,+!p1@THAP2!1.73!69.88!THAP2;;chr2:97202480..97202499,+!p1@ARID5A!1.72!488.11!ARID5A;;chr2:70142232..70142251,+!p1@MXD1!1.72!273.78!MXD1;;chr11:615942..615957,-!p1@IRF7!1.71!454.73!IRF7;;chr9:102584159..102584174,+!p2@NR4A3!1.71!87.61!NR4A3;;chr11:47400032..47400043,-!p5@SPI1!1.71!50.58!SPI1;;chr10:31288398..31288455,-!p2@ZNF438!1.69!55.80!ZNF438;;chr8:22550982..22550999,-!p1@EGR3!1.68!126.72!EGR3;;chr12:54778351..54778378,-!p6@ZNF385A!1.68!46.93!ZNF385A;;chr1:221052733..221052749,+!p2@HLX!1.67!59.45!HLX;;chr12:72056749..72056767,+!p6@THAP2!1.67!50.58!THAP2;;chr6:391743..391759,+!p1@IRF4!1.66!44.33!IRF4;;chr2:157189180..157189290,-!p1@NR4A2!1.65!215.89!NR4A2;;chr11:65430554..65430579,-!p3@RELA!1.65!107.43!RELA;;chr19:45251395..45251432,+!p8@BCL3!1.64!42.76!BCL3;;chr1:158985493..158985535,+!p4@IFI16!1.63!62.06!IFI16;;chr22:38597987..38598021,+!p2@MAFF!1.61!230.50!MAFF;;chr1:212782094..212782109,+!p1@ATF3!1.60!1002.29!ATF3;;chr2:145277640..145277771,-!p1@ZEB2!1.60!495.93!ZEB2;;chr21:30671690..30671762,+!p2@BACH1!1.60!126.20!BACH1;;chr6:106535598..106535637,+!p7@PRDM1!1.60!38.59!PRDM1;;chr3:12329397..12329433,+!p2@PPARG!1.59!84.48!PPARG;;chr2:145275162..145275202,-!p2@ZEB2!1.58!208.07!ZEB2;;chr21:30671235..30671253,+!p1@BACH1!1.57!438.05!BACH1;;chr14:75988771..75988826,+!p1@BATF!1.56!46.41!BATF;;chr21:36421535..36421610,-!p2@RUNX1!1.55!119.42!RUNX1;;chr7:50344289..50344323,+!p1@IKZF1!1.54!33.90!IKZF1;;chr14:75988831..75988847,+!p2@BATF!1.54!33.37!BATF;;chr2:231084639..231084654,-!p2@SP110!1.53!53.71!SP110;;chr10:35484804..35484902,+!p2@CREM!1.51!116.81!CREM;;chr14:35872453..35872485,-!p2@NFKBIA!1.51!75.09!NFKBIA;;chr16:79634595..79634620,-!p2@MAF!1.51!55.80!MAF;;chr12:72056773..72056796,+!p3@THAP2!1.51!40.68!THAP2;;chr17:38497662..38497713,+!p4@RARA!1.51!35.98!RARA;;chr11:65430535..65430549,-!p4@RELA!1.49!34.94!RELA;;chrX:153305787..153305807,-!p3@MECP2!1.49!30.25!MECP2;;chr10:51572408..51572454,+!p3@NCOA4!1.48!165.31!NCOA4;;chr1:158979872..158979898,+!p3@IFI16!1.48!88.13!IFI16;;chr20:48807351..48807384,+!p1@CEBPB!1.47!2786.80!CEBPB;;chr21:34398234..34398250,+!p1@OLIG2!1.47!28.68!OLIG2;;chrX:129244454..129244488,-!p1@ELF4!1.46!193.47!ELF4;;chr9:102584128..102584144,+!p3@NR4A3!1.46!52.67!NR4A3;;chr10:31288370..31288393,-!p3@ZNF438!1.46!28.16!ZNF438;;chr19:19496539..19496576,+!p8@GATAD2A!1.44!45.37!GATAD2A;;chr4:185395590..185395627,-!p3@IRF2!1.44!32.85!IRF2;;chr21:36260343..36260402,-!p6@RUNX1!1.43!40.68!RUNX1;;chr6:144385698..144385742,-!p2@PLAGL1!1.43!31.29!PLAGL1;;chr2:231090471..231090504,+!p2@SP140!1.43!26.07!SP140;;chr11:47400045..47400060,-!p6@SPI1!1.43!26.07!SPI1;;chr13:41593425..41593480,-!p1@ELF1!1.42!154.36!ELF1;;chr6:15246200..15246214,+!p2@JARID2!1.42!68.31!JARID2;;chr18:3449720..3449749,+!p2@TGIF1!1.42!53.19!TGIF1;;chr12:48298765..48298783,-!p2@VDR!1.42!52.15!VDR;;chr9:110252035..110252057,-!p1@KLF4!1.41!380.16!KLF4;;chr3:39195139..39195150,-!p3@CSRNP1!1.40!30.77!CSRNP1;;chr11:47399920..47399931,-!p7@SPI1!1.40!23.99!SPI1;;chr11:615570..615721,-!p2@IRF7!1.39!45.37!IRF7;;chr2:191885737..191885750,-!p4@STAT1!1.38!22.95!STAT1;;chr4:185395633..185395651,-!p2@IRF2!1.37!35.46!IRF2;;chr1:25256439..25256476,-!p3@RUNX3!1.37!22.42!RUNX3;;chr19:36391434..36391450,-!p1@NFKBID!1.36!42.76!NFKBID;;chr9:129567282..129567353,+!p1@ZBTB43!1.35!274.30!ZBTB43;;chr2:61108695..61108753,+!p1@REL!1.35!141.84!REL;;chr12:52445218..52445237,+!p1@NR4A1!1.34!257.09!NR4A1;;chr12:11802753..11802834,+!p2@ETV6!1.34!100.12!ETV6;;chr20:48599506..48599526,+!p1@SNAI1!1.33!127.76!SNAI1;;chr9:102584262..102584276,+!p1@NR4A3!1.33!45.37!NR4A3;;chr20:48809000..48809053,+!p12@CEBPB!1.33!27.12!CEBPB;;chr19:54058073..54058088,+!p1@ZNF331!1.33!20.34!ZNF331;;chr22:38598086..38598105,+!p1@MAFF!1.31!199.21!MAFF;;chr3:187463179..187463201,-!p2@BCL6!1.31!78.22!BCL6;;chr19:45250948..45250998,+!p3@BCL3!1.31!48.50!BCL3;;chr16:79634581..79634592,-!p4@MAF!1.31!19.29!MAF;;chr7:150946376..150946389,-!p6@SMARCD3!1.30!18.77!SMARCD3;;chr14:35873947..35873965,-!p1@NFKBIA!1.29!1123.27!NFKBIA;;chr4:106068026..106068084,+!p1@TET2!1.29!163.22!TET2;;chr18:3449586..3449617,+!p8@TGIF1!1.29!29.20!TGIF1;;chr4:103422499..103422632,+!p1@NFKB1!1.27!359.82!NFKB1;;chr10:104155480..104155534,+!p2@NFKB2!1.27!111.08!NFKB2;;chr3:39195037..39195069,-!p2@CSRNP1!1.27!107.43!CSRNP1;;chr2:70167296..70167306,+!p3@MXD1!1.27!27.12!MXD1;;chr19:54041669..54041697,+!p2@ZNF331!1.27!17.73!ZNF331;;chr10:51572339..51572376,+!p4@NCOA4!1.26!38.07!NCOA4;;chr21:30672734..30672748,+!p11@BACH1!1.26!17.21!BACH1;;chr21:36260980..36261011,-!p1@RUNX1!1.25!466.73!RUNX1;;chr1:158979792..158979814,+!p2@IFI16!1.25!155.40!IFI16;;chr21:30672433..30672464,+!p6@BACH1!1.25!16.69!BACH1;;chr2:231090433..231090469,+!p1@SP140!1.25!16.69!SP140;;chr9:4300050..4300118,-!p1@GLIS3!1.24!103.78!GLIS3;;chr7:149470641..149470694,-!p1@ZNF467!1.24!73.01!ZNF467;;chr2:28618532..28618610,+!p4@FOSL2!1.24!28.16!FOSL2;;chr3:12330560..12330579,+!p1@PPARG!1.24!18.77!PPARG;;chr9:110250697..110250738,-!p2@KLF4!1.23!18.77!KLF4;;chr10:3827371..3827386,-!p2@KLF6!1.22!129.85!KLF6;;chr22:38598057..38598071,+!p3@MAFF!1.22!36.50!MAFF;;chr17:38497715..38497734,+!p8@RARA!1.22!15.64!RARA;;chr12:48298785..48298828,-!p1@VDR!1.21!79.79!VDR;;chr14:35872962..35873025,-!p3@NFKBIA!1.21!38.59!NFKBIA;;chr8:116681123..116681143,-!p4@TRPS1!1.21!29.20!TRPS1;;chr12:56415246..56415286,+!p2@IKZF4!1.21!15.12!IKZF4;;chr18:3449618..3449634,+!p13@TGIF1!1.20!18.25!TGIF1;;chr2:70314240..70314256,+!p4@PCBP1!1.19!29.72!PCBP1;;chr2:185463247..185463263,+!p1@ZNF804A!1.19!25.55!ZNF804A;;chr6:44233252..44233296,-!p1@NFKBIE!1.18!138.19!NFKBIE;;chr6:126240380..126240430,+!p2@NCOA7!1.18!36.50!NCOA7;;chr18:3449527..3449582,+!p6@TGIF1!1.18!27.12!TGIF1;;chr3:150126101..150126118,+!p6@TSC22D2!1.18!22.95!TSC22D2;;chrX:129244430..129244442,-!p5@ELF4!1.18!14.08!ELF4;;chr10:104154246..104154347,+!p3@NFKB2!1.17!83.96!NFKB2;;chr2:238600933..238600985,+!p3@LRRFIP1!1.17!75.09!LRRFIP1;;chr7:28725740..28725778,+!p1@CREB5!1.16!118.90!CREB5;;chr16:89787973..89788001,+!p3@ZNF276!1.16!25.55!ZNF276;;chr6:126240463..126240489,+!p6@NCOA7!1.16!15.12!NCOA7;;chr1:212738742..212738755,+!p2@ATF3!1.16!13.56!ATF3;;chr3:126191157..126191171,-!p4@ZXDC!1.16!13.56!ZXDC;;chr14:75745523..75745537,+!p1@FOS!1.15!1558.19!FOS;;chr20:48807456..48807475,+!p3@CEBPB!1.15!25.55!CEBPB;;chr11:65430038..65430053,-!p12@RELA!1.15!13.04!RELA;;chr2:28615716..28615733,+!p1@FOSL2!1.14!600.75!FOSL2;;chr1:935467..935484,-!p1@HES4!1.14!56.84!HES4;;chr16:3285119..3285133,-!p2@ZNF200!1.14!25.55!ZNF200;;chr5:142782823..142782854,-!p3@NR3C1!1.14!18.25!NR3C1;;chr2:231084820..231084836,-!p5@SP110!1.14!14.60!SP110;;chr17:38474489..38474548,+!p1@RARA!1.13!395.28!RARA;;chr14:74226747..74226779,-!p3@C14orf43!1.13!68.84!C14orf43;;chr10:64575812..64575824,-!p4@EGR2!1.13!12.52!EGR2;;chr13:41593392..41593403,-!p7@ELF1!1.13!12.52!ELF1;;chr7:17338266..17338282,+!p1@AHR!1.12!132.46!AHR;;chr19:45252008..45252024,+!p2@BCL3!1.12!40.15!BCL3;;chr18:3448455..3448480,+!p5@TGIF1!1.12!22.42!TGIF1;;chr6:15246217..15246228,+!p3@JARID2!1.12!21.38!JARID2;;chr20:48807615..48807644,+!p6@CEBPB!1.12!20.34!CEBPB;;chr1:221052994..221053008,+!p6@HLX!1.12!14.60!HLX;;chr21:40177845..40177863,+!p1@ETS2!1.11!708.17!ETS2;;chr21:36260463..36260480,-!p9@RUNX1!1.11!16.17!RUNX1;;chr1:158985686..158985719,+!p15@IFI16!1.11!11.99!IFI16;;chr21:36260325..36260341,-!p14@RUNX1!1.11!11.99!RUNX1;;chr4:106066712..106066728,+!p8@TET2!1.11!11.99!TET2;;chr2:231084659..231084721,-!p1@SP110!1.10!268.04!SP110;;chr2:238600998..238601013,+!p5@LRRFIP1!1.10!11.47!LRRFIP1;;chr2:68615063..68615089,+!p4@PLEK!1.10!11.47!PLEK;;chr3:187455680..187455700,-!p4@BCL6!1.10!11.47!BCL6;;chr1:158979922..158979933,+!p13@IFI16!1.10!11.47!IFI16;;chr2:145277882..145277967,-!p3@ZEB2!1.09!19.82!ZEB2;;chr16:3285144..3285191,-!p1@ZNF200!1.08!54.23!ZNF200;;chr1:221054853..221054873,+!p9@HLX!1.08!10.95!HLX;;chr7:137620684..137620711,-!p4@CREB3L2!1.08!10.95!CREB3L2;;chr2:145271342..145271377,-!p5@ZEB2!1.08!10.95!ZEB2;;chr1:37940170..37940190,+!p1@ZC3H12A!1.07!134.02!ZC3H12A;;chr2:208394817..208394834,+!p3@CREB1!1.07!43.28!CREB1;;chr10:35416142..35416169,+!p3@CREM!1.07!28.68!CREM;;chr2:145275228..145275241,-!p11@ZEB2!1.07!13.04!ZEB2;;chr10:104155455..104155479,+!p1@NFKB2!1.06!152.79!NFKB2;;chr1:157108130..157108173,-!p1@ETV3!1.06!77.18!ETV3;;chr6:35310395..35310410,+!p2@PPARD!1.06!41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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
+|ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057
 |fonse_cell_line=
 |fonse_cell_line_closure=
@@ Line 36: / Line 42: @@
 |fonse_treatment_closure=EFO:0000369,FF:0000625,FF:0000631,FF:0011444,FF:11872-125B9
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Trehalose%2520dimycolate%2520%2528TDM%2529%252c%2520donor2.CNhs13483.11872-125B9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Trehalose%2520dimycolate%2520%2528TDM%2529%252c%2520donor2.CNhs13483.11872-125B9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Trehalose%2520dimycolate%2520%2528TDM%2529%252c%2520donor2.CNhs13483.11872-125B9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Trehalose%2520dimycolate%2520%2528TDM%2529%252c%2520donor2.CNhs13483.11872-125B9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Trehalose%2520dimycolate%2520%2528TDM%2529%252c%2520donor2.CNhs13483.11872-125B9.hg38.nobarcode.ctss.bed.gz
 |id=FF:11872-125B9
 |is_a=EFO:0002091;;FF:0011444
 |is_obsolete=
+|library_id=CNhs13483
+|library_id_phase_based=2:CNhs13483
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11872
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11872
 |name=CD14+ monocytes - treated with Trehalose dimycolate (TDM), donor2
 |namespace=
@@ Line 44: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13483,LSID1025,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=125
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@@ Line 59: / Line 79: @@
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 |sample_cell_line=
@@ Line 80: / Line 101: @@
 |top_motifs=STAT5{A,B}:5.12668448578;STAT2,4,6:5.03089260174;FOSL2:4.35330268841;NFE2:4.13587006393;NFE2L2:3.97044467941;IRF7:3.88216735301;BACH2:3.79385448957;FOS_FOS{B,L1}_JUN{B,D}:3.68954908866;CEBPA,B_DDIT3:3.65082218866;STAT1,3:3.63491530742;IRF1,2:3.48788532449;PAX2:3.29444876047;SREBF1,2:3.23344360894;FOXP3:2.8994923943;SPIB:2.83128537095;HLF:2.82119223775;EP300:2.68986224218;SPI1:2.58160095642;NFE2L1:2.52860649275;ATF4:2.45463286651;ATF5_CREB3:2.45165759864;ETS1,2:2.36346500426;DMAP1_NCOR{1,2}_SMARC:2.33660139343;ZBTB16:2.26837197234;ATF6:2.22837056231;NR1H4:2.12577640531;NANOG{mouse}:2.08186889786;NFIL3:2.06869016154;FOXN1:2.06861133661;NFKB1_REL_RELA:1.79006153193;CREB1:1.76535031658;RUNX1..3:1.74508394576;HSF1,2:1.47855772079;TGIF1:1.40856811394;MAFB:1.29031364784;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.2606442459;BPTF:1.24505782279;JUN:1.21831284565;ELF1,2,4:1.15230445072;FOXD3:1.13912146131;ALX4:1.12218186949;PDX1:1.12031323798;PITX1..3:1.11107397678;CDX1,2,4:1.07765365543;PAX8:1.07160746652;ATF2:0.9910452418;PAX3,7:0.847075602315;HIF1A:0.835466443252;NFATC1..3:0.821466804411;PAX4:0.797434560957;HMGA1,2:0.777929458913;TLX2:0.677333480341;FOXP1:0.651101752959;ESRRA:0.579693231845;HBP1_HMGB_SSRP1_UBTF:0.57091417527;IKZF2:0.506790634257;NKX6-1,2:0.458215435238;SRF:0.421289881899;HMX1:0.419651337906;NR6A1:0.398340617483;GLI1..3:0.351891202323;XBP1:0.280600748722;GATA4:0.261480362833;SMAD1..7,9:0.243715164772;RFX2..5_RFXANK_RFXAP:0.188497340558;AHR_ARNT_ARNT2:0.159298558501;HOX{A6,A7,B6,B7}:0.112234129361;HES1:0.105491649113;PRDM1:0.0822452255267;PPARG:0.0633856732171;FOXM1:0.0500906322778;ESR1:0.0331181296572;NANOG:0.00153848505765;FOXO1,3,4:-0.0134042499449;HOX{A5,B5}:-0.0898213355183;OCT4_SOX2{dimer}:-0.163367040004;FOX{D1,D2}:-0.173285623469;RXRA_VDR{dimer}:-0.183523824702;TBP:-0.184560764647;TFCP2:-0.189284414088;FOXL1:-0.203166070783;NKX3-1:-0.248654715694;EN1,2:-0.253523965796;MYB:-0.257064720997;NKX3-2:-0.276373976464;RREB1:-0.296802932587;EGR1..3:-0.306828697872;ALX1:-0.340712723433;MEF2{A,B,C,D}:-0.425192470982;RBPJ:-0.449585812445;POU1F1:-0.487722152729;POU2F1..3:-0.557511552512;HOXA9_MEIS1:-0.566312264761;RXR{A,B,G}:-0.691360253237;POU5F1:-0.698324874337;MZF1:-0.703405132348;FOX{F1,F2,J1}:-0.712361755655;TFAP4:-0.732205739743;SPZ1:-0.76546576034;TOPORS:-0.799738241691;PAX1,9:-0.833390718504;T:-0.84904816571;REST:-0.857118518586;AIRE:-0.868855166708;HNF4A_NR2F1,2:-0.871183699088;IKZF1:-0.873003064988;DBP:-0.897578840758;VSX1,2:-0.906223033922;ZNF384:-0.945011471813;MYFfamily:-1.00273752237;POU6F1:-1.01709568311;GZF1:-1.02786299085;SOX2:-1.04924576787;NHLH1,2:-1.09736491452;MED-1{core}:-1.10108705858;NKX2-2,8:-1.12302078828;PAX6:-1.13852625057;HNF1A:-1.15137503476;PRRX1,2:-1.17059312582;ZNF238:-1.17962305522;CUX2:-1.19127184369;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.2286112904;GATA6:-1.24913383098;TEF:-1.25211526109;MYBL2:-1.31867271189;RORA:-1.336407544;MTE{core}:-1.34399193791;TFAP2B:-1.38433734524;NKX2-3_NKX2-5:-1.40420945834;ZBTB6:-1.41058005389;ZFP161:-1.46063890475;PATZ1:-1.48942899278;UFEwm:-1.50612572237;NKX2-1,4:-1.51180519922;TAL1_TCF{3,4,12}:-1.5213021723;EVI1:-1.528880108;MTF1:-1.53159483942;ZEB1:-1.56479077072;BREu{core}:-1.57289241142;GCM1,2:-1.57705868003;TEAD1:-1.57805002556;RFX1:-1.59136458035;MYOD1:-1.61796159247;XCPE1{core}:-1.64007440977;SP1:-1.64273274375;TFAP2{A,C}:-1.6614132917;ADNP_IRX_SIX_ZHX:-1.70956599049;GTF2A1,2:-1.71468151743;NR3C1:-1.71480015695;SOX5:-1.73416802447;MAZ:-1.74766102475;FOXA2:-1.75510185931;TP53:-1.77576688739;E2F1..5:-1.78407463462;SOX{8,9,10}:-1.7904142238;TLX1..3_NFIC{dimer}:-1.83192928968;KLF4:-1.8381477702;GTF2I:-1.8493496706;SNAI1..3:-1.91775042518;ZIC1..3:-1.97403977245;ZNF148:-1.98160710731;HOX{A4,D4}:-1.98738921054;TFDP1:-1.99803967906;ONECUT1,2:-2.04279279928;HAND1,2:-2.05974530821;bHLH_family:-2.08396051588;HIC1:-2.09975967271;GFI1B:-2.14037461048;CRX:-2.17578353558;LMO2:-2.20902119273;EBF1:-2.21032297014;NFY{A,B,C}:-2.28284406139;TBX4,5:-2.29700576208;ELK1,4_GABP{A,B1}:-2.31832110651;POU3F1..4:-2.33147520338;NFIX:-2.33606849779;FOX{I1,J2}:-2.3406598515;ZNF423:-2.4442591629;PBX1:-2.50949805721;CDC5L:-2.52386838421;SOX17:-2.56505132643;FOXQ1:-2.59948962023;NR5A1,2:-2.71595325871;NRF1:-2.87442802939;GFI1:-2.93728341334;YY1:-2.97542797272;AR:-3.06800352126;PAX5:-3.13341234337;ARID5B:-3.25121076633;LHX3,4:-3.39587309478;ZNF143:-3.5859174552;LEF1_TCF7_TCF7L1,2:-3.69292127005
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11872-125B9;search_select_hide=table117:FF:11872-125B9
 }}

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FF:11872-125B9: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:25, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0