FFCP PHASE1:Hg19::chr3:50359536..50359565,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
|||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:50359536..50359565,+ | |||
|coexpression_cluster_id=C2 | |coexpression_cluster_id=C2 | ||
|description=CAGE_peak_at_chr3:50359536..50359565,+ | |description=CAGE_peak_at_chr3:50359536..50359565,+ | ||
|id=chr3:50359536..50359565,+ | |id=chr3:50359536..50359565,+ | ||
|ontology_enrichment_celltype=CL:0002139!1.70e-34!24;CL:0000071!2.51e-32!18;CL:0002546!2.51e-32!18;CL:0000115!1.02e-31!35;CL:0002078!2.26e-25!44;CL:0000213!1.70e-17!57;CL:0000215!1.70e-17!57;CL:1000413!4.49e-17!9;CL:0002543!6.43e-12!6;CL:0002544!9.67e-12!6;CL:0000094!1.17e-08!8;CL:0000081!6.19e-08!11;CL:0000775!2.18e-07!3;CL:0002393!6.96e-07!9;CL:0002397!6.96e-07!9 | |ontology_enrichment_celltype=CL:0002139!1.70e-34!24;CL:0000071!2.51e-32!18;CL:0002546!2.51e-32!18;CL:0000115!1.02e-31!35;CL:0002078!2.26e-25!44;CL:0000213!1.70e-17!57;CL:0000215!1.70e-17!57;CL:1000413!4.49e-17!9;CL:0002543!6.43e-12!6;CL:0002544!9.67e-12!6;CL:0000094!1.17e-08!8;CL:0000081!6.19e-08!11;CL:0000775!2.18e-07!3;CL:0002393!6.96e-07!9;CL:0002397!6.96e-07!9 | ||
|ontology_enrichment_celltype_v019=CL:0000071;2.38e-51;18!CL:0000115;1.51e-47;36!CL:0002139;4.34e-38;24!CL:1000413;5.96e-31;9!CL:0000775;8.45e-26;3!CL:0002078;2.97e-25;45!CL:0002543;6.79e-22;6!CL:0000213;4.47e-19;58!CL:0000215;4.47e-19;58!CL:0000094;5.00e-17;8!CL:0002262;5.07e-17;2!CL:1000398;5.07e-17;2!CL:0002188;3.83e-15;5!CL:0000081;1.96e-12;11!CL:0002544;2.47e-12;6!CL:1000746;5.67e-11;7!CL:1000612;5.67e-11;7!CL:0000076;4.24e-09;63 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,1.41e-53,36;CL:0000071,2.90e-51,18;CL:0002546,2.90e-51,18;CL:0002078,2.57e-42,45;CL:0002139,5.03e-38,24;CL:0000213,3.28e-32,58;CL:0000215,3.28e-32,58;CL:1000413,1.12e-30,9;CL:0000775,8.13e-26,3;CL:0002543,5.48e-22,6;CL:0002262,4.68e-17,2;CL:1000398,4.68e-17,2;CL:0000094,5.01e-17,8;CL:0002188,3.48e-15,5;CL:0000222,5.89e-14,121;CL:0000076,2.21e-13,63;CL:0000081,1.97e-12,11;CL:0002544,3.51e-12,6;CL:1000746,5.30e-11,7;CL:1000612,5.30e-11,7 | |||
|ontology_enrichment_development_v019=CL:0002546;2.38e-51;18!CL:0000222;3.49e-07;121 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001986!2.51e-32!18;UBERON:0004638!2.51e-32!18;UBERON:0004852!2.51e-32!18;UBERON:0000487!2.31e-25!22;UBERON:0006914!1.29e-21!25;UBERON:0003915!4.49e-17!9;UBERON:0004700!4.49e-17!9;UBERON:0001917!4.49e-17!9;UBERON:0001009!2.01e-12!113;UBERON:0003081!5.10e-12!216;UBERON:0004535!2.94e-11!110;UBERON:0000055!1.06e-09!69;UBERON:0002049!2.02e-08!79;UBERON:0007798!2.02e-08!79;UBERON:0004872!3.04e-08!84;UBERON:0001981!6.49e-08!60;UBERON:0007500!6.49e-08!60;UBERON:0004537!6.49e-08!60;UBERON:0006965!6.49e-08!60;UBERON:0002193!6.60e-08!112;UBERON:0001638!1.35e-07!9;UBERON:0003920!1.35e-07!9;UBERON:0004582!1.35e-07!9;UBERON:0003914!4.54e-07!118 | |ontology_enrichment_uberon=UBERON:0001986!2.51e-32!18;UBERON:0004638!2.51e-32!18;UBERON:0004852!2.51e-32!18;UBERON:0000487!2.31e-25!22;UBERON:0006914!1.29e-21!25;UBERON:0003915!4.49e-17!9;UBERON:0004700!4.49e-17!9;UBERON:0001917!4.49e-17!9;UBERON:0001009!2.01e-12!113;UBERON:0003081!5.10e-12!216;UBERON:0004535!2.94e-11!110;UBERON:0000055!1.06e-09!69;UBERON:0002049!2.02e-08!79;UBERON:0007798!2.02e-08!79;UBERON:0004872!3.04e-08!84;UBERON:0001981!6.49e-08!60;UBERON:0007500!6.49e-08!60;UBERON:0004537!6.49e-08!60;UBERON:0006965!6.49e-08!60;UBERON:0002193!6.60e-08!112;UBERON:0001638!1.35e-07!9;UBERON:0003920!1.35e-07!9;UBERON:0004582!1.35e-07!9;UBERON:0003914!4.54e-07!118 | ||
|ontology_enrichment_uberon_v019=UBERON:0004638;2.38e-51;18!UBERON:0001986;2.38e-51;18!UBERON:0004852;2.38e-51;18!UBERON:0000487;1.04e-41;22!UBERON:0006914;1.70e-36;25!UBERON:0003915;5.96e-31;9!UBERON:0004700;5.96e-31;9!UBERON:0001917;5.96e-31;9!UBERON:0000490;4.48e-25;33!UBERON:0001281;5.07e-17;2!UBERON:0003497;5.07e-17;2!UBERON:0003909;5.07e-17;2!UBERON:0003835;5.07e-17;2!UBERON:0001638;1.12e-14;9!UBERON:0003920;1.12e-14;9!UBERON:0004582;1.12e-14;9!UBERON:0000353;2.69e-13;15!UBERON:0007500;1.14e-11;56!UBERON:0001981;1.14e-11;56!UBERON:0004537;1.14e-11;56!UBERON:0001280;1.15e-11;3!UBERON:0004647;1.15e-11;3!UBERON:0003914;2.13e-11;74!UBERON:0000074;5.67e-11;7!UBERON:0001229;5.67e-11;7!UBERON:0004535;5.02e-09;109!UBERON:0000025;3.69e-08;93!UBERON:0000055;4.50e-08;65!UBERON:0000119;9.30e-07;139 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004638,2.90e-51,18;UBERON:0001986,2.90e-51,18;UBERON:0004852,2.90e-51,18;UBERON:0000487,1.23e-41,22;UBERON:0006914,1.96e-36,25;UBERON:0003915,1.12e-30,9;UBERON:0004700,1.12e-30,9;UBERON:0001917,1.12e-30,9;UBERON:0007500,2.04e-20,59;UBERON:0001981,2.04e-20,59;UBERON:0004537,2.04e-20,59;UBERON:0006965,2.04e-20,59;UBERON:0000055,2.05e-17,68;UBERON:0001281,4.68e-17,2;UBERON:0003497,4.68e-17,2;UBERON:0003909,4.68e-17,2;UBERON:0003835,4.68e-17,2;UBERON:0003914,1.35e-16,117;UBERON:0004872,3.29e-16,83;UBERON:0004535,1.04e-15,109;UBERON:0001009,3.29e-15,112;UBERON:0002049,6.83e-15,78;UBERON:0007798,6.83e-15,78;UBERON:0001638,9.73e-15,9;UBERON:0003920,9.73e-15,9;UBERON:0004582,9.73e-15,9;UBERON:0000353,2.49e-13,15;UBERON:0003081,4.29e-12,203;UBERON:0001280,1.10e-11,3;UBERON:0004647,1.10e-11,3;UBERON:0005171,1.10e-11,3;UBERON:0010532,5.30e-11,7;UBERON:0000074,5.30e-11,7;UBERON:0001229,5.30e-11,7;UBERON:0001230,5.30e-11,7;UBERON:0003220,5.30e-11,7;UBERON:0005749,5.30e-11,7;UBERON:0004199,5.30e-11,7;UBERON:0004209,5.30e-11,7;UBERON:0004198,5.30e-11,7;UBERON:0000058,1.72e-10,19;UBERON:0005103,1.09e-09,8;UBERON:0000083,1.09e-09,8;UBERON:0009201,1.09e-09,8;UBERON:0006553,1.09e-09,8;UBERON:0003074,1.09e-09,8;UBERON:0003060,1.09e-09,8;UBERON:0000025,7.51e-09,192;UBERON:0000080,1.15e-08,9;UBERON:0002120,1.15e-08,9;UBERON:0004875,1.15e-08,9;UBERON:0005721,1.15e-08,9;UBERON:0005754,1.15e-08,9;UBERON:0007297,1.15e-08,9;UBERON:0004876,3.58e-07,11;UBERON:0000490,8.93e-07,148 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0,0,0.393364276848904,0,0.154816123316076,0,0,0,0,0,0,0,0,0.434021741431704,0,0,0,0.290796477559129,0,0.485168122375632,0.232429036905685,0,0.309706370895104,0,0,0,0,0,1.35426486594342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422510572623884,0.425208599930087,0.419317291016752,0.561643155732475,0.300353785683013,0.48217676009124,0.285012743741249,0.79566670879636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0.189069634328136,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0.993812036833525,0.860234595106124,1.04142150482278,1.13061588384802,1.25849830862972,1.37559020970034,2.92592953151535,0.516833518338658,0,0,0.402829317109147,0.760272105718513,1.70843440283719,0.367663080345869,1.62028389576352,0.17859945656816,0.898117490504679,1.80178368773316,7.66583187329416,4.74632829784064,2.01521918323448,13.1780417436063,0,0,0,0,0,0,0,0,0,0,0,0.404132016209064,1.47115712802113,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252433774244115,0,0,0,0,0,0,0,0,0.243947412259191,0.265059536642971,0,0,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.69077727312324,1.40241773803446,0,0,0,0,0,0,0.368965315629341,0,0,0,0,0,0,0,0,0.115930404975077,0,0.433099343283221,0.462985512576611,0.190254152234598,0,0,0,0.234004265139238,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0.845302752556,0,0,0,0,0.266422179016099,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.7291475028908,8.97484377612075,13.6757119433892,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0.213455115606889,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,3.4120015221269,1.70093705276516,0,3.08454505380579,0,0,0,0,0.223874754722178,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0.569647187174163,0.714695326373367,1.23408681925858,1.94541993357815,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0,0,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296521128680622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429226048136571,0.223171457441873,0.134366944973453,0,0,0.393915911536118,0.494495150286999,0.202210631562555,0,0,0,0,0,0.137539436597234,0,0,0.77380195455795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.471612915298998,0.828478110694391,0,0,0,0,0,0.5013797880454,0,0,0,0,0,0.1251909307065,0,0,0.0620964029413835,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127894371303652,0,0,0.109209638192014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0.126831620387814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214429632529969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0.397901550322736,0,0,0.109940516745429,0,0.0771741581079447,0,0,0,0,0.196308467114945,0,0,0,0.0939839179798536,0.257831551894309,0,0,0,0,0.730336388246517,0.917458566809082,0,0,0.135982980381829,0,0,0,0,0,0,0,2.66066852124018,0,0.26721740526556,0,0,0.303114792872958,0,0,0,0,0,0.0645889098360061,0,0,0,0,0,0.342233301085281,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125542639594803,0,0,0,0.393364276848904,0,0.154816123316076,0,0,0,0,0,0,0,0,0.434021741431704,0,0,0,0.290796477559129,0,0.485168122375632,0.232429036905685,0,0.309706370895104,0,0,0,0,0,1.35426486594342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422510572623884,0.425208599930087,0.419317291016752,0.561643155732475,0.300353785683013,0.48217676009124,0.285012743741249,0.79566670879636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0.189069634328136,0,0,0.196468613246569,0,0,0,0,0,0,0,0,0.993812036833525,0.860234595106124,1.04142150482278,1.13061588384802,1.25849830862972,1.37559020970034,2.92592953151535,0.516833518338658,0,0,0.402829317109147,0.760272105718513,1.70843440283719,0.367663080345869,1.62028389576352,0.17859945656816,0.898117490504679,1.80178368773316,7.66583187329416,4.74632829784064,2.01521918323448,13.1780417436063,0,0,0,0,0,0,0,0,0,0,0,0.404132016209064,1.47115712802113,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.252433774244115,0,0,0,0,0,0,0,0,0.243947412259191,0.265059536642971,0,0,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.69077727312324,1.40241773803446,0,0,0,0,0,0,0.368965315629341,0,0,0,0,0,0,0,0,0.115930404975077,0,0.433099343283221,0.462985512576611,0.190254152234598,0,0,0,0.234004265139238,0,0,0,0,0,0,0,0,0,0.207328115540772,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0.845302752556,0,0,0,0,0.266422179016099,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,15.7291475028908,8.97484377612075,13.6757119433892,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0.213455115606889,0.303127571446259,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,3.4120015221269,1.70093705276516,0,3.08454505380579,0,0,0,0,0.223874754722178,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0.569647187174163,0.714695326373367,1.23408681925858,1.94541993357815,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.293016358543788,0,0,0,0,0,0,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.110579259931225,0,0,0,0,0,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296521128680622,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429226048136571,0.223171457441873,0.134366944973453,0,0,0.393915911536118,0.494495150286999,0.202210631562555,0,0,0,0,0,0.137539436597234,0,0,0.77380195455795,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.471612915298998,0.828478110694391,0,0,0,0,0,0.5013797880454,0,0,0,0,0,0.1251909307065,0,0,0.0620964029413835,0.138348634936231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.127894371303652,0,0,0.109209638192014,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0691572524642179,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0.126831620387814,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214429632529969,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0.397901550322736,0,0,0.109940516745429,0,0.0771741581079447,0,0,0,0,0.196308467114945,0,0,0,0.0939839179798536,0.257831551894309,0,0,0,0,0.730336388246517,0.917458566809082,0,0,0.135982980381829,0,0,0,0,0,0,0,2.66066852124018,0,0.26721740526556,0,0,0.303114792872958,0,0,0,0,0,0.0645889098360061,0,0,0,0,0,0.342233301085281,0,0.0717222053926763,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr3:50359536..50359565,+ | |short_description=p@chr3:50359536..50359565,+ | ||
}} | }} |
Latest revision as of 22:08, 29 July 2015
Short description: | p@chr3:50359536..50359565, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:50359536..50359565, + |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 1.41e-53 | 36 |
blood vessel endothelial cell | 2.90e-51 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.90e-51 | 18 |
meso-epithelial cell | 2.57e-42 | 45 |
endothelial cell of vascular tree | 5.03e-38 | 24 |
lining cell | 3.28e-32 | 58 |
barrier cell | 3.28e-32 | 58 |
endothelial cell of artery | 1.12e-30 | 9 |
neutrophil | 8.13e-26 | 3 |
vein endothelial cell | 5.48e-22 | 6 |
endothelial cell of sinusoid | 4.68e-17 | 2 |
endothelial cell of hepatic sinusoid | 4.68e-17 | 2 |
granulocyte | 5.01e-17 | 8 |
glomerular endothelial cell | 3.48e-15 | 5 |
mesodermal cell | 5.89e-14 | 121 |
squamous epithelial cell | 2.21e-13 | 63 |
blood cell | 1.97e-12 | 11 |
aortic endothelial cell | 3.51e-12 | 6 |
glomerular cell | 5.30e-11 | 7 |
kidney corpuscule cell | 5.30e-11 | 7 |