FFCP PHASE1:Hg19::chr1:212965104..212965141,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr1:212965104..212965141,-
|short_description=p1@NSL1
|description=CAGE_peak_1_at_NSL1_5end
|association_with_transcript=0bp_to_ENST00000366975,ENST00000366976...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=25936 | |EntrezGene=25936 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=24548 | |HGNC=24548 | ||
|TSSclassifier=strong | |||
|UniProt=Q5SY74,Q96IY1,E7ETD5,Q53FM2 | |UniProt=Q5SY74,Q96IY1,E7ETD5,Q53FM2 | ||
|association_with_transcript=0bp_to_ENST00000366975,ENST00000366976,ENST00000366977,ENST00000422588,ENST00000487995,NM_001042549,NM_015471,uc001hjm.2,uc001hjn.2,uc010pti.1_5end | |||
|cluster_id=chr1:212965104..212965141,- | |||
|description=CAGE_peak_1_at_NSL1_5end | |||
|id=chr1:212965104..212965141,- | |||
|ontology_enrichment_celltype=CL:0000945!3.36e-08!24;CL:0000826!3.36e-08!24;CL:0000542!2.71e-07!53;CL:0000051!2.71e-07!53;CL:0000838!7.56e-07!52 | |||
|ontology_enrichment_celltype_v019=CL:0000945;4.35e-08;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,3.36e-08,24;CL:0000826,3.36e-08,24;CL:0000542,2.71e-07,53;CL:0000051,2.71e-07,53;CL:0000838,7.56e-07,52 | |||
|ontology_enrichment_development_v019=UBERON:0006601;2.54e-07;82 | |||
|ontology_enrichment_disease=DOID:162!1.22e-12!235;DOID:14566!8.90e-12!239;DOID:2531!1.69e-08!51;DOID:0060083!1.69e-08!51;DOID:0050687!3.07e-07!143;DOID:305!8.98e-07!106 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:162,1.22e-12,235;DOID:14566,8.90e-12,239;DOID:2531,1.69e-08,51;DOID:0060083,1.69e-08,51;DOID:0050687,3.07e-07,143;DOID:305,8.98e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0001017!1.23e-20!82;UBERON:0000073!5.74e-20!94;UBERON:0001016!5.74e-20!94;UBERON:0005743!2.13e-19!86;UBERON:0000955!5.05e-18!69;UBERON:0006238!5.05e-18!69;UBERON:0001049!9.27e-17!57;UBERON:0005068!9.27e-17!57;UBERON:0006241!9.27e-17!57;UBERON:0007135!9.27e-17!57;UBERON:0007023!7.96e-15!115;UBERON:0003080!1.04e-14!42;UBERON:0002780!2.96e-14!41;UBERON:0001890!2.96e-14!41;UBERON:0006240!2.96e-14!41;UBERON:0002616!8.56e-14!59;UBERON:0001893!3.23e-11!34;UBERON:0002020!5.25e-11!34;UBERON:0003528!5.25e-11!34;UBERON:0002791!7.56e-11!33;UBERON:0000153!4.24e-10!129;UBERON:0007811!4.24e-10!129;UBERON:0001869!4.36e-10!32;UBERON:0003075!1.10e-09!86;UBERON:0007284!1.10e-09!86;UBERON:0002346!1.40e-09!90;UBERON:0000033!4.32e-09!123;UBERON:0000924!5.43e-09!173;UBERON:0006601!5.43e-09!173;UBERON:0004121!5.80e-09!169;UBERON:0003056!2.04e-08!61;UBERON:0000956!9.53e-07!25;UBERON:0000203!9.53e-07!25 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;2.06e-10;41!UBERON:0001890;2.06e-10;41!UBERON:0000073;1.05e-09;53!UBERON:0002616;1.05e-09;53!UBERON:0003528;2.00e-09;34!UBERON:0002020;2.00e-09;34!UBERON:0001893;2.13e-09;34!UBERON:0002791;2.68e-09;32!UBERON:0001869;4.44e-09;32!UBERON:0000955;1.68e-08;68!UBERON:0001017;3.54e-08;75!UBERON:0001016;1.11e-07;83 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.11e-20,89;UBERON:0001017,3.49e-20,81;UBERON:0000955,1.41e-17,68;UBERON:0006238,1.41e-17,68;UBERON:0011216,4.20e-17,223;UBERON:0001049,2.61e-16,56;UBERON:0005068,2.61e-16,56;UBERON:0006241,2.61e-16,56;UBERON:0007135,2.61e-16,56;UBERON:0000073,3.41e-15,53;UBERON:0002616,3.41e-15,53;UBERON:0007023,1.88e-14,114;UBERON:0002780,2.96e-14,41;UBERON:0001890,2.96e-14,41;UBERON:0003080,2.96e-14,41;UBERON:0006240,2.96e-14,41;UBERON:0001893,3.23e-11,34;UBERON:0003528,5.25e-11,34;UBERON:0002020,5.25e-11,34;UBERON:0002791,2.91e-10,32;UBERON:0001869,4.36e-10,32;UBERON:0003075,2.72e-09,82;UBERON:0007284,2.72e-09,82;UBERON:0002346,3.46e-09,86;UBERON:0004121,9.90e-09,171;UBERON:0000924,9.90e-09,171;UBERON:0006601,9.90e-09,171;UBERON:0003056,4.00e-08,61;UBERON:0000956,9.53e-07,25;UBERON:0000203,9.53e-07,25 | |||
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| ||
|short_description=p1@NSL1 | |||
}} | }} |
Latest revision as of 00:50, 25 September 2015
Short description: | p1@NSL1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_NSL1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000366975, ENST00000366976, ENST00000366977, ENST00000422588, ENST00000487995, NM_001042549, NM_015471, uc001hjm.2, uc001hjn.2, uc010pti.1_5end |
EntrezGene: | NSL1 |
HGNC: | 24548 |
UniProt: | Q5SY74Q96IY1E7ETD5Q53FM2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 3.36e-08 | 24 |
pro-B cell | 3.36e-08 | 24 |
lymphocyte | 2.71e-07 | 53 |
common lymphoid progenitor | 2.71e-07 | 53 |
lymphoid lineage restricted progenitor cell | 7.56e-07 | 52 |
Ontology term | p-value | n |
---|---|---|
nervous system | 1.11e-20 | 89 |
central nervous system | 3.49e-20 | 81 |
brain | 1.41e-17 | 68 |
future brain | 1.41e-17 | 68 |
organ system subdivision | 4.20e-17 | 223 |
neural tube | 2.61e-16 | 56 |
neural rod | 2.61e-16 | 56 |
future spinal cord | 2.61e-16 | 56 |
neural keel | 2.61e-16 | 56 |
regional part of nervous system | 3.41e-15 | 53 |
regional part of brain | 3.41e-15 | 53 |
adult organism | 1.88e-14 | 114 |
regional part of forebrain | 2.96e-14 | 41 |
forebrain | 2.96e-14 | 41 |
anterior neural tube | 2.96e-14 | 41 |
future forebrain | 2.96e-14 | 41 |
telencephalon | 3.23e-11 | 34 |
brain grey matter | 5.25e-11 | 34 |
gray matter | 5.25e-11 | 34 |
regional part of telencephalon | 2.91e-10 | 32 |
cerebral hemisphere | 4.36e-10 | 32 |
neural plate | 2.72e-09 | 82 |
presumptive neural plate | 2.72e-09 | 82 |
neurectoderm | 3.46e-09 | 86 |
ectoderm-derived structure | 9.90e-09 | 171 |
ectoderm | 9.90e-09 | 171 |
presumptive ectoderm | 9.90e-09 | 171 |
pre-chordal neural plate | 4.00e-08 | 61 |
cerebral cortex | 9.53e-07 | 25 |
pallium | 9.53e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
cancer | 1.22e-12 | 235 |
disease of cellular proliferation | 8.90e-12 | 239 |
hematologic cancer | 1.69e-08 | 51 |
immune system cancer | 1.69e-08 | 51 |
cell type cancer | 3.07e-07 | 143 |
carcinoma | 8.98e-07 | 106 |