FFCP PHASE1:Hg19::chr12:49332803..49332822,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:49332803..49332822,- | |||
|description=CAGE_peak_at_chr12:49332803..49332822,- | |description=CAGE_peak_at_chr12:49332803..49332822,- | ||
|id=chr12:49332803..49332822,- | |id=chr12:49332803..49332822,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002594;1.06e-09;4!CL:0000222;1.25e-09;1!CL:0002188;1.50e-07;5 | |ontology_enrichment_celltype_v019=CL:0002594;1.06e-09;4!CL:0000222;1.25e-09;1!CL:0002188;1.50e-07;5 | ||
|ontology_enrichment_celltype_v019_2=CL:0002594,1.01e-09,4;CL:0002188,1.32e-07,5 | |||
|ontology_enrichment_development_v019=UBERON:0009143;4.45e-10;1!UBERON:0005754;1.25e-09;1!UBERON:0005425;1.25e-09;1 | |ontology_enrichment_development_v019=UBERON:0009143;4.45e-10;1!UBERON:0005754;1.25e-09;1!UBERON:0005425;1.25e-09;1 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!3.83e-07!34;UBERON:0003528!3.83e-07!34;UBERON:0007023!4.42e-07!115 | |ontology_enrichment_uberon=UBERON:0002020!3.83e-07!34;UBERON:0003528!3.83e-07!34;UBERON:0007023!4.42e-07!115 | ||
|ontology_enrichment_uberon_v019=UBERON:0001310;1.06e-09;4!UBERON:0007029;1.25e-09;1!UBERON:0000998;1.25e-09;1!UBERON:0000941;1.25e-09;1!UBERON:0001785;1.25e-09;1!UBERON:0002464;1.25e-09;1!UBERON:0004904;1.25e-09;1!UBERON:0006868;1.25e-09;1!UBERON:0001021;1.25e-09;1 | |ontology_enrichment_uberon_v019=UBERON:0001310;1.06e-09;4!UBERON:0007029;1.25e-09;1!UBERON:0000998;1.25e-09;1!UBERON:0000941;1.25e-09;1!UBERON:0001785;1.25e-09;1!UBERON:0002464;1.25e-09;1!UBERON:0004904;1.25e-09;1!UBERON:0006868;1.25e-09;1!UBERON:0001021;1.25e-09;1 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0007029,9.70e-10,1;UBERON:0001310,1.01e-09,4;UBERON:0000941,1.06e-09,1;UBERON:0001785,1.06e-09,1;UBERON:0002464,1.06e-09,1;UBERON:0004904,1.06e-09,1;UBERON:0001021,1.06e-09,1;UBERON:0003902,1.06e-09,1;UBERON:0005425,1.06e-09,1;UBERON:0000998,1.48e-09,1;UBERON:0006868,1.48e-09,1;UBERON:0000080,7.25e-09,9;UBERON:0002120,7.25e-09,9;UBERON:0004875,7.25e-09,9;UBERON:0005721,7.25e-09,9;UBERON:0005754,7.25e-09,9;UBERON:0007297,7.25e-09,9;UBERON:0004876,2.44e-07,11;UBERON:0003887,9.15e-07,12 | |||
|phase1_expression=0,0.428201047781966,0,0,0,0.872338524100369,0,0,0,0.245733936501509,1.39560233594486,0,0.263766978228454,0,0,0,0,0,0,0.123121058076788,0.204000691244253,0,0,0.136874425072884,0.251085279189606,0.0764134057479513,0.0821005894499457,0,0.393364276848904,0,0.154816123316076,0,0,0,0.154934401160603,0,0,1.10799081706375,0,0.434021741431704,0.223915474239924,0.32389366601898,0,0.436194716338694,0.755751887377619,0.727752183563449,0.232429036905685,0.822335776043652,0.309706370895104,0,0.512321413058201,0,0,0,0,0,0.818718450173537,0,0,0,1.27867425159808,0.989553900560148,0.199463657621632,0,0,0,0,0.251248665256743,0,0.217188844705117,0,0,0,0,0,0,0.22465726229299,0,0.32145117339416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393010762749165,0.616804496998528,0,0,0,0,0,0.294605907474837,0,0,0,0.260118695119756,0.328875809207352,0,0,0,0,1.04535523804977,0,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0.087834785693126,0,0.364295288292542,0.741568885568859,0,0.696518949197069,0.26591592103773,0,0.571994910780128,0,0,0,0.347140501607594,0,0.419499436209906,0.550236083880135,0,0.516833518338658,0,0,0,0,0.24406205754817,0,0,0.267899184852239,0,0.112611480483322,0,0,0.183201743930407,0,0,0.436094052142534,0,0,0.132409180813219,0,0.354668382198357,1.12135520028461,0,0,0,0,0,0.302714855289863,0,0,0,0,0.298897361103602,0.117434498643765,0,0.280901613404497,0.408308342509787,0.122834317311768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103052529238439,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0.286804595389004,0.121973706129595,0.132529768321485,0.116193942869518,0.10366105501537,0.252320850875628,0,0,0.643240938192885,0,0,0,0.946454400318751,0,0,0.110293972732394,0.653638332277218,0,2.56179485504312,0.784885860501384,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0,0,0.738651018262192,0,0.297262324577456,0,0,0,0.0895585227028483,0,0,0,0,0.207328115540772,0,0,0,0.763976851116555,0,1.71072446022705,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0.325736184293735,0,0,0,0,0.099972991182057,0,0,0,0.239624855491583,0,0,0.144781306667579,0,0.179060963239896,0,0.197030760201927,0.215627574859517,0,0,0,0,0,0,0,0,0.414415513436035,0.12269149171914,0,0,0.207970861530807,0,0,0,0.300946099727719,0,0,0,0.368738337083406,0,0.195801157462741,0,0,0,0.106727557803444,0,0,0,0,0.153461973288062,0,0,0,0.160853921143607,0,0.154209693802656,0,0.0821271560138091,0,0,0.120859449591622,0.40101294060657,0.184161977871793,0,0,0,0,0,0.784349769176855,0,0.105551628892876,0,0,0.215915916102139,1.54227252690289,0.812839312631559,0,0,0.831076008928724,0,0,0,0,0.328014645699706,0,0,0.0915694648183434,0.082509499920588,0,0,0,0,0.154048617114644,0.15350367472613,0.275673144969061,0,0,0,0,0,0.576570202095319,0,0,0,0,0.6970372701606,0.308033580176089,0,0,0,0.143124886741991,0,0.316379424718726,0.38126038784765,0,0,0.318203247925937,0,0,0,0.353437207037059,0,1.58510321173008,0.421258456238981,0,0,0,0.272999822815972,0.424216295861138,0,0,0,0,0,0,3.44947640836597,0,0,0.143411352204052,0.0982490410131212,4.63672366925625,0,0,0,0,0.349934720244983,0.192444225451024,0.670302275535787,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0.540031437238115,0,0.106824071127473,0,0.245040215981032,0,0,0,0,0,0,1.69338866179106,0,1.12318871245384,0,0.156679895773023,0,0.338583555603207,0.1605880751037,0,0,3.09154810280188,0,0.223676107892416,0,0.781552381608161,0.278406173895242,0,0.540911356951966,0,0,0,0,0,0.111443384277478,0,0.23874448473769,0,0,0,0.844016498463076,0,0.16480387422676,0,0,0.276283915531148,0,0,0,0.311039587661807,0,0,0,0.394573622547734,0,0,0,1.11321717794222,0,0.260427761085233,0,0,0,0,1.65471377237555,0,0,0,0,0.241192877250816,0,0.110579259931225,0.591095237907095,0.219385397153973,0,0,0.153900517007594,0,0,0.0897576444097721,0.108647371922008,0.31900115973192,0,0,0,0.31396051279005,0.166211681900156,0,0,0,0,0,0,0,0.141353071433941,0,0,0.176915129006678,0,0,0,0.104421949505455,0,0,0.468528891450678,0,0.391329237864179,0,0.394584402849391,0,0.30607276163049,0.126373159256976,0,0,0.664653872707185,0,0,0,0,0.138674673013139,0,0.0979923974143777,0,0.17472666824203,0,0.0967563312890851,0.219267951258557,0,3.39461557709468,0,0,0.137041924646751,0,0.379864775735272,0.586654148204409,0,0.640358984218058,0.19980960958213,0,0,0,0,0,0.235694034616795,0,0.104602846312333,0,0,0,0.273810757783986,0,0,0,0.837847203816763,0.229160424011684,0,0,0,0.89268582976749,0.0671834724867263,0,0,0,0,0.13480708770837,0,0,0,0.681017030557878,0.321506296930038,0.275078873194468,0.83088067605837,0.2249738915515,0,0.121499113316049,0,0.236417121897595,0,0.105600336519406,0,0.191915197319445,0.714695326373367,0,0.25426853765475,0,0,0.326587360109409,0,0.082092520749339,0.340776043570843,0,0.146552233678082,0,0.129282956361551,0.52893040697076,0,0,0.854299300541557,0,0.828478110694391,0.496166021811951,0.197611631897944,0.121792598380896,0,0,0,0.612691153526923,0,0,0,0.854183854313742,0.500763722825999,0,0.110929051536852,0,0,0,0.151649117541648,0,0,0,0,0.149254802886874,0,0,0,0,0,0,0,0,0.147855149989634,0,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0,0,0.686791410365586,1.01024846629776,1.26184898228651,0,0,0.521988583930423,0.680117776536817,0.231522474323834,0,0,0.617602894321944,0,0,0,0,0,0,0.303859956177382,0.414775308455192,0.584580926518165,0,0,0.655219697692825,0.491545817507439,0,0,0.320075189082423,0.172214979660816,0,0.368211900503681,0,0.622077260032973,0,0,0,0.218419276384028,0,0.212574920101683,0.247871528518004,0,0,0,0,0,0.3062454773532,0.128458450192919,1.41696576325585,0.478901577171454,0.82046545696302,0.756215088665154,0.138314504928436,0.484426936895553,1.42769420259154,0,0,0,0,0.381382095467167,0,0,0,0.20170506870352,0,0,0.163771917510097,0,0.135075169236789,0,0.206686796501184,0.19024743058172,0,0,0,0,0.127762427639595,0,0,0,0,0.887023701626388,0,0.171488009437418,0,0.131545547125698,0,0,0.235479278551542,0.157115589916002,0,0,0,0,0,0,0,0.173858272302579,0,0,0.17071847709395,0,0.430227358820278,0,0.0852134047591577,1.27016115057279,0,0.31020638566432,0,0,0,0,0,0.205325613712494,0,1.45713297917742,0.935757853848423,0,0.356760272332706,0,0,0,0,0,0,0,0,0.196308467114945,0,0.4226557275834,0,0,0.0644578879735772,0.299823467774787,0.178553938605658,0,0.0802413666891683,0,0,0.143339583151451,0,0.0679914901909147,0.436350690340377,0.5290268405154,1.85997509083376,0,0,0.378499274505237,0,0,0.203977659483963,0,0,0,0.303114792872958,0,0,0.103432995861895,0.213233981900981,0,0.0645889098360061,0.0620747142958579,0.112131862580613,0.25458863311266,0,0,0,0,0.215166616178029,0.332660356546013,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0.428201047781966,0,0,0,0.872338524100369,0,0,0,0.245733936501509,1.39560233594486,0,0.263766978228454,0,0,0,0,0,0,0.123121058076788,0.204000691244253,0,0,0.136874425072884,0.251085279189606,0.0764134057479513,0.0821005894499457,0,0.393364276848904,0,0.154816123316076,0,0,0,0.154934401160603,0,0,1.10799081706375,0,0.434021741431704,0.223915474239924,0.32389366601898,0,0.436194716338694,0.755751887377619,0.727752183563449,0.232429036905685,0.822335776043652,0.309706370895104,0,0.512321413058201,0,0,0,0,0,0.818718450173537,0,0,0,1.27867425159808,0.989553900560148,0.199463657621632,0,0,0,0,0.251248665256743,0,0.217188844705117,0,0,0,0,0,0,0.22465726229299,0,0.32145117339416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393010762749165,0.616804496998528,0,0,0,0,0,0.294605907474837,0,0,0,0.260118695119756,0.328875809207352,0,0,0,0,1.04535523804977,0,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0,0,0.087834785693126,0,0.364295288292542,0.741568885568859,0,0.696518949197069,0.26591592103773,0,0.571994910780128,0,0,0,0.347140501607594,0,0.419499436209906,0.550236083880135,0,0.516833518338658,0,0,0,0,0.24406205754817,0,0,0.267899184852239,0,0.112611480483322,0,0,0.183201743930407,0,0,0.436094052142534,0,0,0.132409180813219,0,0.354668382198357,1.12135520028461,0,0,0,0,0,0.302714855289863,0,0,0,0,0.298897361103602,0.117434498643765,0,0.280901613404497,0.408308342509787,0.122834317311768,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.103052529238439,0,0,0,0,0,0,0,0,0,0,0.193260853163297,0,0.286804595389004,0.121973706129595,0.132529768321485,0.116193942869518,0.10366105501537,0.252320850875628,0,0,0.643240938192885,0,0,0,0.946454400318751,0,0,0.110293972732394,0.653638332277218,0,2.56179485504312,0.784885860501384,0,0,0,0,0,0,0,0,0,0,0,0,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0,0,0.738651018262192,0,0.297262324577456,0,0,0,0.0895585227028483,0,0,0,0,0.207328115540772,0,0,0,0.763976851116555,0,1.71072446022705,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0.325736184293735,0,0,0,0,0.099972991182057,0,0,0,0.239624855491583,0,0,0.144781306667579,0,0.179060963239896,0,0.197030760201927,0.215627574859517,0,0,0,0,0,0,0,0,0.414415513436035,0.12269149171914,0,0,0.207970861530807,0,0,0,0.300946099727719,0,0,0,0.368738337083406,0,0.195801157462741,0,0,0,0.106727557803444,0,0,0,0,0.153461973288062,0,0,0,0.160853921143607,0,0.154209693802656,0,0.0821271560138091,0,0,0.120859449591622,0.40101294060657,0.184161977871793,0,0,0,0,0,0.784349769176855,0,0.105551628892876,0,0,0.215915916102139,1.54227252690289,0.812839312631559,0,0,0.831076008928724,0,0,0,0,0.328014645699706,0,0,0.0915694648183434,0.082509499920588,0,0,0,0,0.154048617114644,0.15350367472613,0.275673144969061,0,0,0,0,0,0.576570202095319,0,0,0,0,0.6970372701606,0.308033580176089,0,0,0,0.143124886741991,0,0.316379424718726,0.38126038784765,0,0,0.318203247925937,0,0,0,0.353437207037059,0,1.58510321173008,0.421258456238981,0,0,0,0.272999822815972,0.424216295861138,0,0,0,0,0,0,3.44947640836597,0,0,0.143411352204052,0.0982490410131212,4.63672366925625,0,0,0,0,0.349934720244983,0.192444225451024,0.670302275535787,0,0.188287601553558,0,0,0,0,0,0,0,0,0,0,0.540031437238115,0,0.106824071127473,0,0.245040215981032,0,0,0,0,0,0,1.69338866179106,0,1.12318871245384,0,0.156679895773023,0,0.338583555603207,0.1605880751037,0,0,3.09154810280188,0,0.223676107892416,0,0.781552381608161,0.278406173895242,0,0.540911356951966,0,0,0,0,0,0.111443384277478,0,0.23874448473769,0,0,0,0.844016498463076,0,0.16480387422676,0,0,0.276283915531148,0,0,0,0.311039587661807,0,0,0,0.394573622547734,0,0,0,1.11321717794222,0,0.260427761085233,0,0,0,0,1.65471377237555,0,0,0,0,0.241192877250816,0,0.110579259931225,0.591095237907095,0.219385397153973,0,0,0.153900517007594,0,0,0.0897576444097721,0.108647371922008,0.31900115973192,0,0,0,0.31396051279005,0.166211681900156,0,0,0,0,0,0,0,0.141353071433941,0,0,0.176915129006678,0,0,0,0.104421949505455,0,0,0.468528891450678,0,0.391329237864179,0,0.394584402849391,0,0.30607276163049,0.126373159256976,0,0,0.664653872707185,0,0,0,0,0.138674673013139,0,0.0979923974143777,0,0.17472666824203,0,0.0967563312890851,0.219267951258557,0,3.39461557709468,0,0,0.137041924646751,0,0.379864775735272,0.586654148204409,0,0.640358984218058,0.19980960958213,0,0,0,0,0,0.235694034616795,0,0.104602846312333,0,0,0,0.273810757783986,0,0,0,0.837847203816763,0.229160424011684,0,0,0,0.89268582976749,0.0671834724867263,0,0,0,0,0.13480708770837,0,0,0,0.681017030557878,0.321506296930038,0.275078873194468,0.83088067605837,0.2249738915515,0,0.121499113316049,0,0.236417121897595,0,0.105600336519406,0,0.191915197319445,0.714695326373367,0,0.25426853765475,0,0,0.326587360109409,0,0.082092520749339,0.340776043570843,0,0.146552233678082,0,0.129282956361551,0.52893040697076,0,0,0.854299300541557,0,0.828478110694391,0.496166021811951,0.197611631897944,0.121792598380896,0,0,0,0.612691153526923,0,0,0,0.854183854313742,0.500763722825999,0,0.110929051536852,0,0,0,0.151649117541648,0,0,0,0,0.149254802886874,0,0,0,0,0,0,0,0,0.147855149989634,0,0,0.155262956876259,0,0,0,0,0,0,0,0,0,0,0,0.686791410365586,1.01024846629776,1.26184898228651,0,0,0.521988583930423,0.680117776536817,0.231522474323834,0,0,0.617602894321944,0,0,0,0,0,0,0.303859956177382,0.414775308455192,0.584580926518165,0,0,0.655219697692825,0.491545817507439,0,0,0.320075189082423,0.172214979660816,0,0.368211900503681,0,0.622077260032973,0,0,0,0.218419276384028,0,0.212574920101683,0.247871528518004,0,0,0,0,0,0.3062454773532,0.128458450192919,1.41696576325585,0.478901577171454,0.82046545696302,0.756215088665154,0.138314504928436,0.484426936895553,1.42769420259154,0,0,0,0,0.381382095467167,0,0,0,0.20170506870352,0,0,0.163771917510097,0,0.135075169236789,0,0.206686796501184,0.19024743058172,0,0,0,0,0.127762427639595,0,0,0,0,0.887023701626388,0,0.171488009437418,0,0.131545547125698,0,0,0.235479278551542,0.157115589916002,0,0,0,0,0,0,0,0.173858272302579,0,0,0.17071847709395,0,0.430227358820278,0,0.0852134047591577,1.27016115057279,0,0.31020638566432,0,0,0,0,0,0.205325613712494,0,1.45713297917742,0.935757853848423,0,0.356760272332706,0,0,0,0,0,0,0,0,0.196308467114945,0,0.4226557275834,0,0,0.0644578879735772,0.299823467774787,0.178553938605658,0,0.0802413666891683,0,0,0.143339583151451,0,0.0679914901909147,0.436350690340377,0.5290268405154,1.85997509083376,0,0,0.378499274505237,0,0,0.203977659483963,0,0,0,0.303114792872958,0,0,0.103432995861895,0.213233981900981,0,0.0645889098360061,0.0620747142958579,0.112131862580613,0.25458863311266,0,0,0,0,0.215166616178029,0.332660356546013,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr12:49332803..49332822,- | |short_description=p@chr12:49332803..49332822,- | ||
}} | }} |
Latest revision as of 08:56, 24 July 2015
Short description: | p@chr12:49332803..49332822, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:49332803..49332822, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
smooth muscle cell of the umbilical artery | 1.01e-09 | 4 |
glomerular endothelial cell | 1.32e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
surface | 9.70e-10 | 1 |
umbilical artery | 1.01e-09 | 4 |
cranial nerve II | 1.06e-09 | 1 |
cranial nerve | 1.06e-09 | 1 |
nerve trunk | 1.06e-09 | 1 |
nerve connecting eye with brain | 1.06e-09 | 1 |
nerve | 1.06e-09 | 1 |
retinal neural layer | 1.06e-09 | 1 |
presumptive neural retina | 1.06e-09 | 1 |
seminal vesicle | 1.48e-09 | 1 |
seminal fluid secreting gland | 1.48e-09 | 1 |
mesonephros | 7.25e-09 | 9 |
pronephros | 7.25e-09 | 9 |
nephrogenic cord | 7.25e-09 | 9 |
pronephric mesoderm | 7.25e-09 | 9 |
rostral part of nephrogenic cord | 7.25e-09 | 9 |
presumptive pronephric mesoderm | 7.25e-09 | 9 |
urogenital ridge | 2.44e-07 | 11 |
intraembryonic coelom | 9.15e-07 | 12 |