FFCP PHASE1:Hg19::chrM:10882..10893,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=303bp_to_uc004cov.3_5end | |association_with_transcript=303bp_to_uc004cov.3_5end | ||
|cluster_id=chrM:10882..10893,+ | |||
|coexpression_cluster_id=C180 | |coexpression_cluster_id=C180 | ||
|description=CAGE_peak_12_at_uc004cov.3_5end | |description=CAGE_peak_12_at_uc004cov.3_5end | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |ontology_enrichment_celltype_v019= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;2.09e-08;82 | |ontology_enrichment_development_v019=UBERON:0006601;2.09e-08;82 | ||
|ontology_enrichment_disease=DOID:14566!3.42e-16!239;DOID:162!1.19e-15!235;DOID:0050687!6.16e-11!143;DOID:0050686!9.66e-08!137;DOID:305!7.60e-07!106 | |ontology_enrichment_disease=DOID:14566!3.42e-16!239;DOID:162!1.19e-15!235;DOID:0050687!6.16e-11!143;DOID:0050686!9.66e-08!137;DOID:305!7.60e-07!106 | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2=DOID:14566,3.41e-16,239;DOID:162,1.19e-15,235;DOID:0050687,6.15e-11,143;DOID:0050686,9.66e-08,137;DOID:305,7.59e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0007023!1.32e-25!115;UBERON:0001049!7.22e-20!57;UBERON:0005068!7.22e-20!57;UBERON:0006241!7.22e-20!57;UBERON:0007135!7.22e-20!57;UBERON:0002780!6.09e-17!41;UBERON:0001890!6.09e-17!41;UBERON:0006240!6.09e-17!41;UBERON:0003080!8.28e-17!42;UBERON:0001017!2.30e-16!82;UBERON:0000073!2.54e-15!94;UBERON:0001016!2.54e-15!94;UBERON:0000955!6.18e-15!69;UBERON:0006238!6.18e-15!69;UBERON:0002616!7.71e-15!59;UBERON:0005743!9.41e-15!86;UBERON:0002020!2.16e-14!34;UBERON:0003528!2.16e-14!34;UBERON:0001893!1.51e-13!34;UBERON:0002791!2.47e-13!33;UBERON:0001869!8.46e-13!32;UBERON:0002346!9.33e-13!90;UBERON:0003075!6.36e-12!86;UBERON:0007284!6.36e-12!86;UBERON:0002619!1.70e-11!22;UBERON:0001950!2.72e-10!20;UBERON:0000956!1.45e-09!25;UBERON:0000203!1.45e-09!25;UBERON:0000924!2.11e-08!173;UBERON:0006601!2.11e-08!173;UBERON:0003056!2.86e-08!61;UBERON:0004121!9.09e-08!169 | |ontology_enrichment_uberon=UBERON:0007023!1.32e-25!115;UBERON:0001049!7.22e-20!57;UBERON:0005068!7.22e-20!57;UBERON:0006241!7.22e-20!57;UBERON:0007135!7.22e-20!57;UBERON:0002780!6.09e-17!41;UBERON:0001890!6.09e-17!41;UBERON:0006240!6.09e-17!41;UBERON:0003080!8.28e-17!42;UBERON:0001017!2.30e-16!82;UBERON:0000073!2.54e-15!94;UBERON:0001016!2.54e-15!94;UBERON:0000955!6.18e-15!69;UBERON:0006238!6.18e-15!69;UBERON:0002616!7.71e-15!59;UBERON:0005743!9.41e-15!86;UBERON:0002020!2.16e-14!34;UBERON:0003528!2.16e-14!34;UBERON:0001893!1.51e-13!34;UBERON:0002791!2.47e-13!33;UBERON:0001869!8.46e-13!32;UBERON:0002346!9.33e-13!90;UBERON:0003075!6.36e-12!86;UBERON:0007284!6.36e-12!86;UBERON:0002619!1.70e-11!22;UBERON:0001950!2.72e-10!20;UBERON:0000956!1.45e-09!25;UBERON:0000203!1.45e-09!25;UBERON:0000924!2.11e-08!173;UBERON:0006601!2.11e-08!173;UBERON:0003056!2.86e-08!61;UBERON:0004121!9.09e-08!169 | ||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.69e-12;41!UBERON:0001890;1.69e-12;41!UBERON:0003528;2.77e-12;34!UBERON:0002020;2.77e-12;34!UBERON:0002791;5.81e-12;32!UBERON:0001869;1.18e-11;32!UBERON:0001893;1.65e-11;34!UBERON:0002619;1.69e-11;22!UBERON:0000073;5.18e-11;53!UBERON:0002616;5.18e-11;53!UBERON:0001950;2.70e-10;20!UBERON:0000956;1.24e-09;25!UBERON:0000203;1.24e-09;25!UBERON:0007023;8.76e-08;114!UBERON:0000955;1.66e-07;68!UBERON:0001017;2.23e-07;75!UBERON:0001016;2.75e-07;83 | |ontology_enrichment_uberon_v019=UBERON:0002780;1.69e-12;41!UBERON:0001890;1.69e-12;41!UBERON:0003528;2.77e-12;34!UBERON:0002020;2.77e-12;34!UBERON:0002791;5.81e-12;32!UBERON:0001869;1.18e-11;32!UBERON:0001893;1.65e-11;34!UBERON:0002619;1.69e-11;22!UBERON:0000073;5.18e-11;53!UBERON:0002616;5.18e-11;53!UBERON:0001950;2.70e-10;20!UBERON:0000956;1.24e-09;25!UBERON:0000203;1.24e-09;25!UBERON:0007023;8.76e-08;114!UBERON:0000955;1.66e-07;68!UBERON:0001017;2.23e-07;75!UBERON:0001016;2.75e-07;83 | ||
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| ||
|short_description=p12@uc004cov.3 | |short_description=p12@uc004cov.3 | ||
}} | }} |
Latest revision as of 03:53, 1 August 2015
Short description: | p12@uc004cov.3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_uc004cov.3_5end |
Coexpression cluster: | C180_skeletal_heart_Hepatocyte_acute_occipital_hippocampus_middle |
Association with transcript: | 303bp_to_uc004cov.3_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
adult organism | 4.44e-25 | 114 |
neural tube | 6.24e-20 | 56 |
neural rod | 6.24e-20 | 56 |
future spinal cord | 6.24e-20 | 56 |
neural keel | 6.24e-20 | 56 |
regional part of nervous system | 1.78e-18 | 53 |
regional part of brain | 1.78e-18 | 53 |
regional part of forebrain | 6.08e-17 | 41 |
forebrain | 6.08e-17 | 41 |
anterior neural tube | 6.08e-17 | 41 |
future forebrain | 6.08e-17 | 41 |
nervous system | 7.68e-17 | 89 |
central nervous system | 2.40e-16 | 81 |
brain | 6.28e-15 | 68 |
future brain | 6.28e-15 | 68 |
brain grey matter | 2.16e-14 | 34 |
gray matter | 2.16e-14 | 34 |
telencephalon | 1.51e-13 | 34 |
regional part of telencephalon | 3.72e-13 | 32 |
neurectoderm | 5.13e-13 | 86 |
cerebral hemisphere | 8.45e-13 | 32 |
neural plate | 3.56e-12 | 82 |
presumptive neural plate | 3.56e-12 | 82 |
regional part of cerebral cortex | 1.70e-11 | 22 |
organ system subdivision | 4.81e-11 | 223 |
neocortex | 2.72e-10 | 20 |
ecto-epithelium | 1.36e-09 | 104 |
cerebral cortex | 1.45e-09 | 25 |
pallium | 1.45e-09 | 25 |
pre-chordal neural plate | 1.14e-08 | 61 |
ectoderm-derived structure | 2.94e-08 | 171 |
ectoderm | 2.94e-08 | 171 |
presumptive ectoderm | 2.94e-08 | 171 |
Ontology term | p-value | n |
---|---|---|
disease of cellular proliferation | 3.41e-16 | 239 |
cancer | 1.19e-15 | 235 |
cell type cancer | 6.15e-11 | 143 |
organ system cancer | 9.66e-08 | 137 |
carcinoma | 7.59e-07 | 106 |