FFCP PHASE1:Hg19::chr20:62795787..62795793,+: Difference between revisions
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(Created page with "{{FFCP
|id=chr20:62795787..62795793,+
|short_description=p8@MYT1
|description=CAGE_peak_8_at_MYT1_5end
|association_with_transcript=-33bp_to_ENST00000328439,ENST0000053631...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=4661 | |EntrezGene=4661 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7622 | |HGNC=7622 | ||
|TSSclassifier=strong | |||
|UniProt=Q01538,F5H7M8,Q7Z5W2 | |UniProt=Q01538,F5H7M8,Q7Z5W2 | ||
|association_with_transcript=-33bp_to_ENST00000328439,ENST00000536311,NM_004535,uc002yii.2_5end | |||
|cluster_id=chr20:62795787..62795793,+ | |||
|coexpression_cluster_id=C11 | |||
|description=CAGE_peak_8_at_MYT1_5end | |||
|id=chr20:62795787..62795793,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000047;5.15e-21;2 | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006215;5.20e-118;3 | |||
|ontology_enrichment_disease=DOID:169!9.05e-09!6 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!1.40e-44!57;UBERON:0005068!1.40e-44!57;UBERON:0006241!1.40e-44!57;UBERON:0007135!1.40e-44!57;UBERON:0002616!6.27e-43!59;UBERON:0001017!2.28e-38!82;UBERON:0000073!2.47e-38!94;UBERON:0001016!2.47e-38!94;UBERON:0005743!2.25e-36!86;UBERON:0000955!1.66e-35!69;UBERON:0006238!1.66e-35!69;UBERON:0003075!8.89e-31!86;UBERON:0007284!8.89e-31!86;UBERON:0002346!3.38e-29!90;UBERON:0002780!4.78e-29!41;UBERON:0001890!4.78e-29!41;UBERON:0006240!4.78e-29!41;UBERON:0003080!2.72e-28!42;UBERON:0002791!8.62e-28!33;UBERON:0002020!5.16e-27!34;UBERON:0003528!5.16e-27!34;UBERON:0001893!6.50e-27!34;UBERON:0001869!1.04e-24!32;UBERON:0001950!7.12e-24!20;UBERON:0004733!2.24e-22!12;UBERON:0002028!2.24e-22!12;UBERON:0007277!2.24e-22!12;UBERON:0002619!1.21e-21!22;UBERON:0004732!1.38e-20!13;UBERON:0004121!4.38e-19!169;UBERON:0000956!6.15e-19!25;UBERON:0000203!6.15e-19!25;UBERON:0003056!1.42e-18!61;UBERON:0000924!1.61e-18!173;UBERON:0006601!1.61e-18!173;UBERON:0000033!5.16e-18!123;UBERON:0003076!1.02e-17!15;UBERON:0003057!1.02e-17!15;UBERON:0000153!5.82e-17!129;UBERON:0007811!5.82e-17!129;UBERON:0007023!3.94e-16!115;UBERON:0002680!7.06e-16!9;UBERON:0001895!7.06e-16!9;UBERON:0010092!7.06e-16!9;UBERON:0000369!2.16e-12!4;UBERON:0002435!2.16e-12!4;UBERON:0000204!2.16e-12!4;UBERON:0010082!2.16e-12!4;UBERON:0000025!4.76e-12!194;UBERON:0002298!2.53e-11!8;UBERON:0001871!3.77e-11!7;UBERON:0002021!3.19e-10!5;UBERON:0002420!9.46e-10!9;UBERON:0007245!9.46e-10!9;UBERON:0010009!9.46e-10!9;UBERON:0010011!9.46e-10!9;UBERON:0000454!9.46e-10!9;UBERON:0002308!1.34e-09!9;UBERON:0000125!1.34e-09!9;UBERON:0002037!2.26e-09!6;UBERON:0006215!2.26e-09!6;UBERON:0000064!4.61e-09!219;UBERON:0004111!1.09e-08!241;UBERON:0000988!1.90e-08!3;UBERON:0001896!2.74e-08!3;UBERON:0005290!2.74e-08!3;UBERON:0010096!2.74e-08!3;UBERON:0005383!5.44e-08!3;UBERON:0005382!5.44e-08!3;UBERON:0009663!2.76e-07!7;UBERON:0000483!4.28e-07!309;UBERON:0000119!5.66e-07!312 | |||
|ontology_enrichment_uberon_v019=UBERON:0002680;2.82e-70;9!UBERON:0001895;2.82e-70;9!UBERON:0002037;1.22e-59;6!UBERON:0004733;5.63e-53;12!UBERON:0002028;5.63e-53;12!UBERON:0004732;5.57e-49;13!UBERON:0000988;1.71e-14;3!UBERON:0001016;4.20e-09;83!UBERON:0000073;5.95e-09;53!UBERON:0002616;5.95e-09;53!UBERON:0002298;6.55e-08;6 | |||
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|short_description=p8@MYT1 | |||
}} | }} |
Latest revision as of 15:34, 17 September 2015
Short description: | p8@MYT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_MYT1_5end |
Coexpression cluster: | C11_cerebellum_medulla_pons_parietal_occipital_middle_medial |
Association with transcript: | -33bp_to_ENST00000328439, ENST00000536311, NM_004535, uc002yii.2_5end |
EntrezGene: | MYT1 |
HGNC: | 7622 |
UniProt: | Q01538F5H7M8Q7Z5W2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
regional part of metencephalon | 3.09e-70 | 9 |
metencephalon | 3.09e-70 | 9 |
future metencephalon | 3.09e-70 | 9 |
cerebellum | 9.96e-60 | 6 |
rhombic lip | 9.96e-60 | 6 |
segmental subdivision of hindbrain | 6.02e-53 | 12 |
hindbrain | 6.02e-53 | 12 |
presumptive hindbrain | 6.02e-53 | 12 |
segmental subdivision of nervous system | 5.93e-49 | 13 |
posterior neural tube | 1.46e-42 | 15 |
chordal neural plate | 1.46e-42 | 15 |
pons | 2.09e-14 | 3 |
central nervous system | 1.45e-12 | 81 |
regional part of nervous system | 2.04e-12 | 53 |
regional part of brain | 2.04e-12 | 53 |
neural tube | 8.46e-12 | 56 |
neural rod | 8.46e-12 | 56 |
future spinal cord | 8.46e-12 | 56 |
neural keel | 8.46e-12 | 56 |
nervous system | 2.13e-11 | 89 |
brain | 9.88e-10 | 68 |
future brain | 9.88e-10 | 68 |
neural plate | 2.64e-08 | 82 |
presumptive neural plate | 2.64e-08 | 82 |
neurectoderm | 5.98e-08 | 86 |
brainstem | 7.25e-08 | 6 |