FFCP PHASE1:Hg19::chr21:27253456..27253467,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr21:27253456..27253467,-
|short_description=p34@APP
|description=CAGE_peak_34_at_APP_5end
|association_with_transcript=-258bp_to_S41242,S41243_5end
|EntrezGe...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=351 | |EntrezGene=351 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=620 | |HGNC=620 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-258bp_to_S41242,S41243_5end | |||
|cluster_id=chr21:27253456..27253467,- | |||
|description=CAGE_peak_34_at_APP_5end | |||
|id=chr21:27253456..27253467,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0002139;5.08e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0002139,4.57e-07,24 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000483!9.39e-11!309;UBERON:0000119!2.23e-10!312;UBERON:0001049!3.07e-10!57;UBERON:0005068!3.07e-10!57;UBERON:0006241!3.07e-10!57;UBERON:0007135!3.07e-10!57;UBERON:0000468!7.19e-10!659;UBERON:0003080!7.28e-10!42;UBERON:0003075!1.10e-09!86;UBERON:0007284!1.10e-09!86;UBERON:0002346!1.62e-09!90;UBERON:0001017!1.82e-09!82;UBERON:0002780!2.05e-09!41;UBERON:0001890!2.05e-09!41;UBERON:0006240!2.05e-09!41;UBERON:0002616!2.67e-09!59;UBERON:0000477!2.87e-09!286;UBERON:0000073!3.38e-09!94;UBERON:0001016!3.38e-09!94;UBERON:0005743!3.91e-09!86;UBERON:0000467!4.24e-09!625;UBERON:0004111!4.69e-09!241;UBERON:0000480!6.08e-09!626;UBERON:0000955!1.31e-08!69;UBERON:0006238!1.31e-08!69;UBERON:0002020!2.04e-08!34;UBERON:0003528!2.04e-08!34;UBERON:0004121!4.54e-08!169;UBERON:0000924!4.64e-08!173;UBERON:0006601!4.64e-08!173;UBERON:0001893!1.01e-07!34;UBERON:0003056!1.13e-07!61;UBERON:0002791!1.62e-07!33;UBERON:0001869!2.05e-07!32;UBERON:0000025!6.06e-07!194;UBERON:0000922!6.42e-07!612;UBERON:0000475!9.55e-07!365 | |||
|ontology_enrichment_uberon_v019=UBERON:0002619;2.08e-12;22!UBERON:0001950;6.74e-11;20!UBERON:0000956;8.74e-11;25!UBERON:0000203;8.74e-11;25!UBERON:0005904;1.03e-09;4!UBERON:0001871;2.50e-09;6!UBERON:0002771;3.29e-09;2!UBERON:0002021;8.16e-08;5!UBERON:0002791;1.25e-07;32!UBERON:0001869;1.25e-07;32!UBERON:0003528;1.49e-07;34!UBERON:0002020;1.49e-07;34!UBERON:0001893;9.80e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002619,1.19e-12,22;UBERON:0010371,2.16e-11,104;UBERON:0001950,5.19e-11,20;UBERON:0000956,5.36e-11,25;UBERON:0000203,5.36e-11,25;UBERON:0005904,8.73e-10,4;UBERON:0003528,1.32e-09,34;UBERON:0002020,1.32e-09,34;UBERON:0002771,1.74e-09,2;UBERON:0001871,2.09e-09,6;UBERON:0003075,1.70e-08,82;UBERON:0007284,1.70e-08,82;UBERON:0004111,2.29e-08,240;UBERON:0002791,2.59e-08,32;UBERON:0001869,2.59e-08,32;UBERON:0002021,5.75e-08,5;UBERON:0002346,6.04e-08,86;UBERON:0004121,6.22e-08,171;UBERON:0000924,6.22e-08,171;UBERON:0006601,6.22e-08,171;UBERON:0001893,9.56e-08,34;UBERON:0002780,1.06e-07,41;UBERON:0001890,1.06e-07,41;UBERON:0003080,1.06e-07,41;UBERON:0006240,1.06e-07,41;UBERON:0001049,1.37e-07,56;UBERON:0005068,1.37e-07,56;UBERON:0006241,1.37e-07,56;UBERON:0007135,1.37e-07,56;UBERON:0010314,3.85e-07,132;UBERON:0000073,8.12e-07,53;UBERON:0002616,8.12e-07,53;UBERON:0003056,8.47e-07,61 | |||
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|phase1_expression=0.363356758541113,0.214100523890983,0.281908808191942,0,0.446961094427288,0,0,0,0,0,0,0.218441372130172,0,0,0.331397375727916,3.36162573225888,0.602694528023977,0,1.46379839637152,0.123121058076788,0,0.313454721478088,0,0.273748850145768,0.251085279189606,0,0,0.0787107813136792,0,0,0.154816123316076,0,0,0,0,0,0,0,0,0.434021741431704,0.223915474239924,0,0,0,0,0,0,0.411167888021826,0,0,0,0,0,0,0,0,0.272906150057846,0,0,0.320929027076094,0,0,0,0,0.290209238628584,0,0,0,0,0.217188844705117,0,0,0,0,0,0,0.112328631146495,0,0.16072558669708,0,0,0,0,0,0.889509253863555,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0.393010762749165,0,0,0,0,0,0,0,0,0,0,0,0,0.276350017785848,0,0.14828656316206,0,0,0.113309342697566,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0,0,0,2.43806866313962,0.670700859703636,0.255725123687061,0.722878304769133,0,0,0,0,0.0945348171640679,0.665188192387692,0.43917392846563,0.261958150995425,0.364295288292542,0,0,0.174129737299267,0.398873881556595,0,0.571994910780128,0,0.79504962946682,1.72046919021225,0.694281003215189,0.56530794192401,0,0.275118041940067,0,0.516833518338658,1.06729878806013,0,1.61131726843659,1.52054421143703,0.24406205754817,1.47065232138347,0,0.357198913136319,0.673588117878509,0.112611480483322,0,0,0.183201743930407,0,0,0.872188104285069,0.496971951695318,0.25326102332916,0.529636723252875,1.14734648299525,0,0,0,0,0,0.134710672069688,0.326923806226917,0.302714855289863,1.15235184896,0.468642863667593,0,0.570471821544449,0.149448680551801,0,0,0,0,0,0,0,0.247266929278557,0,0,0,0,0,0,0.30648779579902,0,0.113432183160021,0.358779271377724,0,0.211931901159562,0,0.412210116953756,0.772921620136887,0.558350568994769,0.168776332241266,0.0974370051611986,0.252433774244115,0.184099797284599,0.161646056818812,0.355009592516614,0.10075209822764,0,0.966304265816484,1.36373060295417,1.14721838155602,0.121973706129595,0,0,0.414644220061482,0.252320850875628,0.36497735907583,0,1.28648187638577,0,0.928735856063958,1.44375896333917,0.354920400119532,0.337169380156203,0,0.330881918197182,0,0,0.404493924480493,0.588664395376038,0,0,0,0,0,0,0,0,0,0.122988438543114,0,0.878002283269004,0,0.201057944823262,0.277765335475589,0,0,1.44331342025273,0.231860809950154,0.117408694235822,1.15493158208859,0.462985512576611,1.14152491340759,0,0,0.246217006087397,0,0.297262324577456,0,0.671928512795438,0.425325291727159,0.268675568108545,0.290633938513962,0.383382679165211,0,0,0,0,0,0,0,0,0,0,0.300343057843917,0.285826432630578,0.112131084345361,0,0,0.775630294546667,0,0.845302752556,1.06375246633948,1.04007436911366,0.771622122786426,0,0,0.57191197463259,0,0,0,0,0,0.301439377059586,0,0.299918973546171,0,0,0,0,0,0,0.289562613335158,0.205476322550383,0.179060963239896,0,0,0,0,0,0,0,0.670065061337395,0.637938751653163,0,0,0,0.12269149171914,0.500170521059677,0,0,0.356857977594324,0.315404830067869,0.468565659970853,0,0,0,0,0.184369168541703,0.260650843404249,0.195801157462741,0,0,0,0,0,0,0.30239029332968,0.248107807818777,0.306923946576125,0.280660094433074,0.384417447767103,0,0.160853921143607,0,0.154209693802656,0.355123450626254,0.246381468041427,0.519254429183621,0.348631135379878,0.241718899183244,0.40101294060657,0.460404944679482,0.34444334449382,0.546273504020151,0.524497659837696,0,0.462092022626489,0,0,0.527758144464379,0,0.170093705276516,0.647747748306418,0,0.270946437543853,0.501689773854853,0.509752546090077,0,0.223874754722178,0,0,0.512900250232778,0,0,0.515205058238611,0.366277859273374,0.082509499920588,0,0,1.6068392984416,0.193341436584244,0.308097234229289,0.15350367472613,0,0.214840489736547,0.290033387828457,0.0852266274161009,0.445160178233687,0.661139661443912,0.576570202095319,0.765676274967505,0.6069466851333,0,0.94443704049192,0,0.308033580176089,0,0,0,0,0.372158369359667,0,0,0.255897791311334,0,0,0,0.179872457583315,0,0,0.808729926293264,0,0.842516912477962,0.48763373908959,0,1.05650146756755,0,0,0,0.551365343546124,0,0.438450885253763,0,0,0,0.30982349809975,0.281695602532241,0.143411352204052,0.392996164052485,0,0.354761064070598,0,0.658589785919804,0,0,0.288666338176536,0,0,0.188287601553558,0,0,0.443430153536676,0.459446800413919,0,0,0,0,0,0.648473311192717,0,0,0,0,0,0.185803175125719,0,0,0,0,0,0.211673582723883,0,0,0.228234679033192,0,0,0,0,0.403599414382095,0,0,0,0,0,0,0,0,0,0,0,0,0,0.121360521749513,0,0.284136146806413,0,0,0,0,1.40669416410513,0.222617410045812,0,0,0.597743964753209,0,0,0.102268682502155,0,0.622079175323615,0.0898683511473268,0.537063524026827,0,0.0986434056369336,0,0,0.969332746095218,0.927680981618513,0,0,0,0.724999575434793,0.227586896570999,0,0,0,0,0.347249989866585,0.885741385813839,0.361789315876224,0,0,0,1.09692698576986,0,0.139423744278603,0,0.569710279235006,0.46112780877612,0.269272933229316,0,0,0.274792780205587,1.5991043280559,0,0,0,0,0,0,0,0.158936578980379,0.421996129056054,0.163232808159148,0.141353071433941,0.432777279484182,0.995261931078505,0.0884575645033392,1.83309043480088,0,0,0.104421949505455,0.202203398942031,0.802577647298789,0.4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| ||
|short_description=p34@APP | |||
}} | }} |
Latest revision as of 22:36, 17 September 2015
Short description: | p34@APP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_34_at_APP_5end |
Coexpression cluster: | NA |
Association with transcript: | -258bp_to_S41242, S41243_5end |
EntrezGene: | APP |
HGNC: | 620 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell of vascular tree | 4.57e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
regional part of cerebral cortex | 1.19e-12 | 22 |
ecto-epithelium | 2.16e-11 | 104 |
neocortex | 5.19e-11 | 20 |
cerebral cortex | 5.36e-11 | 25 |
pallium | 5.36e-11 | 25 |
duct of male reproductive system | 8.73e-10 | 4 |
brain grey matter | 1.32e-09 | 34 |
gray matter | 1.32e-09 | 34 |
middle temporal gyrus | 1.74e-09 | 2 |
temporal lobe | 2.09e-09 | 6 |
neural plate | 1.70e-08 | 82 |
presumptive neural plate | 1.70e-08 | 82 |
anatomical conduit | 2.29e-08 | 240 |
regional part of telencephalon | 2.59e-08 | 32 |
cerebral hemisphere | 2.59e-08 | 32 |
occipital lobe | 5.75e-08 | 5 |
neurectoderm | 6.04e-08 | 86 |
ectoderm-derived structure | 6.22e-08 | 171 |
ectoderm | 6.22e-08 | 171 |
presumptive ectoderm | 6.22e-08 | 171 |
telencephalon | 9.56e-08 | 34 |
regional part of forebrain | 1.06e-07 | 41 |
forebrain | 1.06e-07 | 41 |
anterior neural tube | 1.06e-07 | 41 |
future forebrain | 1.06e-07 | 41 |
neural tube | 1.37e-07 | 56 |
neural rod | 1.37e-07 | 56 |
future spinal cord | 1.37e-07 | 56 |
neural keel | 1.37e-07 | 56 |
structure with developmental contribution from neural crest | 3.85e-07 | 132 |
regional part of nervous system | 8.12e-07 | 53 |
regional part of brain | 8.12e-07 | 53 |
pre-chordal neural plate | 8.47e-07 | 61 |