FFCP PHASE1:Hg19::chr2:235841327..235841336,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:235841327..235841336,+ | |||
|coexpression_cluster_id=C97 | |coexpression_cluster_id=C97 | ||
|description=CAGE_peak_at_chr2:235841327..235841336,+ | |description=CAGE_peak_at_chr2:235841327..235841336,+ | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000123;8.10e-26;2!CL:0000242;8.10e-26;2!CL:0000312;3.42e-11;5!CL:0000240;1.50e-09;6!CL:0000311;1.50e-09;6!CL:0000079;1.50e-09;6!CL:0000237;1.50e-09;6!CL:0000362;8.61e-07;9 | |ontology_enrichment_celltype_v019=CL:0000123;8.10e-26;2!CL:0000242;8.10e-26;2!CL:0000312;3.42e-11;5!CL:0000240;1.50e-09;6!CL:0000311;1.50e-09;6!CL:0000079;1.50e-09;6!CL:0000237;1.50e-09;6!CL:0000362;8.61e-07;9 | ||
|ontology_enrichment_celltype_v019_2=CL:0000242,7.14e-26,2;CL:0000312,3.26e-11,5;CL:0000240,1.44e-09,6;CL:0000311,1.44e-09,6;CL:0000079,1.44e-09,6;CL:0000237,1.44e-09,6;CL:0000036,1.44e-09,6;CL:0000357,1.44e-09,6;CL:0000114,1.44e-09,6;CL:0000362,8.37e-07,9 | |||
|ontology_enrichment_development_v019=UBERON:0005425;5.12e-50;1!UBERON:0003056;1.03e-17;3!CL:0000357;1.50e-09;6!CL:0000114;1.50e-09;6 | |ontology_enrichment_development_v019=UBERON:0005425;5.12e-50;1!UBERON:0003056;1.03e-17;3!CL:0000357;1.50e-09;6!CL:0000114;1.50e-09;6 | ||
|ontology_enrichment_disease=DOID:0050619!6.77e-11!1;DOID:1357!6.77e-11!1 | |ontology_enrichment_disease=DOID:0050619!6.77e-11!1;DOID:1357!6.77e-11!1 | ||
|ontology_enrichment_disease_v019=DOID:5409;8.82e-14;4!DOID:4362;2.94e-11;5!DOID:1325;1.89e-08;7!DOID:3904;1.89e-08;7!DOID:3905;7.48e-07;9 | |ontology_enrichment_disease_v019=DOID:5409;8.82e-14;4!DOID:4362;2.94e-11;5!DOID:1325;1.89e-08;7!DOID:3904;1.89e-08;7!DOID:3905;7.48e-07;9 | ||
|ontology_enrichment_disease_v019_2=DOID:5409,8.82e-14,4;DOID:4362,2.94e-11,5;DOID:1325,1.89e-08,7;DOID:3904,1.89e-08,7;DOID:3905,7.48e-07,9 | |||
|ontology_enrichment_uberon=UBERON:0005162!5.40e-20!2;UBERON:0000122!5.40e-20!2;UBERON:0000941!3.41e-11!1;UBERON:0004904!3.41e-11!1;UBERON:0002464!3.41e-11!1;UBERON:0001021!3.41e-11!1;UBERON:0001785!3.41e-11!1;UBERON:0001764!6.77e-11!1;UBERON:0001825!6.77e-11!1;UBERON:0002336!1.46e-10!1;UBERON:0001018!1.46e-10!1;UBERON:0002473!1.46e-10!1;UBERON:0005340!1.46e-10!1;UBERON:0002316!1.46e-10!1;UBERON:0003544!1.46e-10!1;UBERON:0001020!1.46e-10!1;UBERON:0005970!1.46e-10!1;UBERON:0002437!1.46e-10!1;UBERON:0002372!1.61e-10!1;UBERON:0001961!1.61e-10!1;UBERON:0001744!1.61e-10!1;UBERON:0001735!1.61e-10!1;UBERON:0002022!1.77e-10!1;UBERON:0001950!1.70e-07!20;UBERON:0002791!7.35e-07!33;UBERON:0002619!7.42e-07!22 | |ontology_enrichment_uberon=UBERON:0005162!5.40e-20!2;UBERON:0000122!5.40e-20!2;UBERON:0000941!3.41e-11!1;UBERON:0004904!3.41e-11!1;UBERON:0002464!3.41e-11!1;UBERON:0001021!3.41e-11!1;UBERON:0001785!3.41e-11!1;UBERON:0001764!6.77e-11!1;UBERON:0001825!6.77e-11!1;UBERON:0002336!1.46e-10!1;UBERON:0001018!1.46e-10!1;UBERON:0002473!1.46e-10!1;UBERON:0005340!1.46e-10!1;UBERON:0002316!1.46e-10!1;UBERON:0003544!1.46e-10!1;UBERON:0001020!1.46e-10!1;UBERON:0005970!1.46e-10!1;UBERON:0002437!1.46e-10!1;UBERON:0002372!1.61e-10!1;UBERON:0001961!1.61e-10!1;UBERON:0001744!1.61e-10!1;UBERON:0001735!1.61e-10!1;UBERON:0002022!1.77e-10!1;UBERON:0001950!1.70e-07!20;UBERON:0002791!7.35e-07!33;UBERON:0002619!7.42e-07!22 | ||
|ontology_enrichment_uberon_v019=UBERON:0000941;5.12e-50;1!UBERON:0001785;5.12e-50;1!UBERON:0002464;5.12e-50;1!UBERON:0004904;5.12e-50;1!UBERON:0001021;5.12e-50;1!UBERON:0003714;8.10e-26;2!UBERON:0005162;8.10e-26;2!UBERON:0000122;8.10e-26;2!UBERON:0000002;1.32e-09;6!UBERON:0001560;1.32e-09;6!UBERON:0000010;8.61e-07;8 | |ontology_enrichment_uberon_v019=UBERON:0000941;5.12e-50;1!UBERON:0001785;5.12e-50;1!UBERON:0002464;5.12e-50;1!UBERON:0004904;5.12e-50;1!UBERON:0001021;5.12e-50;1!UBERON:0003714;8.10e-26;2!UBERON:0005162;8.10e-26;2!UBERON:0000122;8.10e-26;2!UBERON:0000002;1.32e-09;6!UBERON:0001560;1.32e-09;6!UBERON:0000010;8.61e-07;8 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,6.58e-50,1;UBERON:0001785,6.58e-50,1;UBERON:0002464,6.58e-50,1;UBERON:0004904,6.58e-50,1;UBERON:0001021,6.58e-50,1;UBERON:0003902,6.58e-50,1;UBERON:0005425,6.58e-50,1;UBERON:0003714,9.18e-26,2;UBERON:0005162,9.18e-26,2;UBERON:0000122,9.18e-26,2;UBERON:0001781,1.29e-13,4;UBERON:0000002,1.32e-09,6;UBERON:0001560,1.32e-09,6;UBERON:0000966,1.57e-09,6;UBERON:0005388,1.57e-09,6;UBERON:0001802,1.57e-09,6;UBERON:0000010,8.85e-07,8 | |||
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|short_description=p@chr2:235841327..235841336,+ | |short_description=p@chr2:235841327..235841336,+ | ||
}} | }} |
Latest revision as of 08:03, 29 July 2015
Short description: | p@chr2:235841327..235841336, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:235841327..235841336, + |
Coexpression cluster: | C97_small_smallcell_gastrointestinal_argyrophil_putamen_duodenum_brain |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 7.14e-26 | 2 |
keratinocyte | 3.26e-11 | 5 |
stratified squamous epithelial cell | 1.44e-09 | 6 |
keratin accumulating cell | 1.44e-09 | 6 |
stratified epithelial cell | 1.44e-09 | 6 |
keratinizing barrier epithelial cell | 1.44e-09 | 6 |
epithelial fate stem cell | 1.44e-09 | 6 |
stratified epithelial stem cell | 1.44e-09 | 6 |
surface ectodermal cell | 1.44e-09 | 6 |
epidermal cell | 8.37e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 6.58e-50 | 1 |
cranial nerve | 6.58e-50 | 1 |
nerve trunk | 6.58e-50 | 1 |
nerve connecting eye with brain | 6.58e-50 | 1 |
nerve | 6.58e-50 | 1 |
retinal neural layer | 6.58e-50 | 1 |
presumptive neural retina | 6.58e-50 | 1 |
neural tissue | 9.18e-26 | 2 |
multi cell component structure | 9.18e-26 | 2 |
neuron projection bundle | 9.18e-26 | 2 |
layer of retina | 1.29e-13 | 4 |
uterine cervix | 1.32e-09 | 6 |
neck of organ | 1.32e-09 | 6 |
retina | 1.57e-09 | 6 |
photoreceptor array | 1.57e-09 | 6 |
posterior segment of eyeball | 1.57e-09 | 6 |
peripheral nervous system | 8.85e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
lung small cell carcinoma | 8.82e-14 | 4 |
cervical cancer | 2.94e-11 | 5 |
bronchus cancer | 1.89e-08 | 7 |
bronchogenic carcinoma | 1.89e-08 | 7 |
lung carcinoma | 7.48e-07 | 9 |