FF:11868-125B5: Difference between revisions

Latest revision as of 18:24, 4 June 2020

Name:	CD14+ monocytes - treated with Candida, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs13473
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	NA
dev stage	NA
sex	female
age	69
cell type	monocyte
cell line	NA
company	NA
collaboration	Christine Wells (University of Queensland)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	D3-9
catalog number	NA
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-miRNeasy_Mini-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00005942

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs13473		CAGE		DRX008141		DRR009013

Accession ID Hg19

Library id		BAM		CTSS
CNhs13473		DRZ000438		DRZ001823

Accession ID Hg38

Library id		BAM		CTSS
CNhs13473		DRZ011788		DRZ013173

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	1.055
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.0622
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0.648
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	-0.459
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0.129
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0.129
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0.308
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.487
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0.783
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0.308
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0.83
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0.648
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0.228
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	0.516
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	0.489
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	0.0646
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0.533
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0.376
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0.533
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	0.638
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0.487
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	0.409
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0.533
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.792
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0.435
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	1.018
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0.435
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.829
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0.967
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	0.741
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0.487
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.415
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0.765
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0.487
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0.575
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	-0.704
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	1.002
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0.435
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0.858
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0.194
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0.326
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0.533
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0.308
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0.435
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0.575
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0.648
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0.376
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0.16
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0.251
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0.376
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0.228
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13473

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	3.6418e-8
MA0003.1	MA0003.1	0.98
MA0004.1	MA0004.1	0.155
MA0006.1	MA0006.1	0.818
MA0007.1	MA0007.1	0.84
MA0009.1	MA0009.1	0.497
MA0014.1	MA0014.1	0.718
MA0017.1	MA0017.1	0.249
MA0018.2	MA0018.2	0.042
MA0019.1	MA0019.1	0.548
MA0024.1	MA0024.1	0.00303
MA0025.1	MA0025.1	0.00121
MA0027.1	MA0027.1	0.989
MA0028.1	MA0028.1	0.0915
MA0029.1	MA0029.1	0.142
MA0030.1	MA0030.1	0.155
MA0031.1	MA0031.1	0.326
MA0035.2	MA0035.2	0.264
MA0038.1	MA0038.1	0.608
MA0039.2	MA0039.2	0.705
MA0040.1	MA0040.1	0.724
MA0041.1	MA0041.1	0.886
MA0042.1	MA0042.1	0.439
MA0043.1	MA0043.1	4.87361e-9
MA0046.1	MA0046.1	0.00776
MA0047.2	MA0047.2	0.264
MA0048.1	MA0048.1	0.484
MA0050.1	MA0050.1	3.8026e-11
MA0051.1	MA0051.1	4.28228e-5
MA0052.1	MA0052.1	0.00693
MA0055.1	MA0055.1	0.33
MA0057.1	MA0057.1	0.339
MA0058.1	MA0058.1	0.0547
MA0059.1	MA0059.1	0.0929
MA0060.1	MA0060.1	6.66218e-8
MA0061.1	MA0061.1	6.42839e-16
MA0062.2	MA0062.2	0.798
MA0065.2	MA0065.2	0.047
MA0066.1	MA0066.1	0.0335
MA0067.1	MA0067.1	6.24027e-7
MA0068.1	MA0068.1	0.903
MA0069.1	MA0069.1	0.796
MA0070.1	MA0070.1	0.0202
MA0071.1	MA0071.1	0.445
MA0072.1	MA0072.1	0.602
MA0073.1	MA0073.1	0.461
MA0074.1	MA0074.1	0.114
MA0076.1	MA0076.1	0.111
MA0077.1	MA0077.1	0.282
MA0078.1	MA0078.1	0.421
MA0079.2	MA0079.2	0.113
MA0080.2	MA0080.2	6.63657e-11
MA0081.1	MA0081.1	5.97265e-4
MA0083.1	MA0083.1	0.907
MA0084.1	MA0084.1	0.656
MA0087.1	MA0087.1	0.853
MA0088.1	MA0088.1	0.482
MA0090.1	MA0090.1	0.516
MA0091.1	MA0091.1	0.708
MA0092.1	MA0092.1	0.389
MA0093.1	MA0093.1	0.203
MA0099.2	MA0099.2	3.52211e-46
MA0100.1	MA0100.1	0.822
MA0101.1	MA0101.1	3.51463e-18
MA0102.2	MA0102.2	1.40013e-9
MA0103.1	MA0103.1	0.0583
MA0104.2	MA0104.2	0.196
MA0105.1	MA0105.1	6.77176e-21
MA0106.1	MA0106.1	0.758
MA0107.1	MA0107.1	1.16677e-21
MA0108.2	MA0108.2	0.568
MA0111.1	MA0111.1	0.472
MA0112.2	MA0112.2	7.0498e-4
MA0113.1	MA0113.1	0.971
MA0114.1	MA0114.1	0.278
MA0115.1	MA0115.1	0.639
MA0116.1	MA0116.1	6.00074e-4
MA0117.1	MA0117.1	0.0496
MA0119.1	MA0119.1	0.156
MA0122.1	MA0122.1	0.837
MA0124.1	MA0124.1	0.488
MA0125.1	MA0125.1	0.198
MA0131.1	MA0131.1	0.467
MA0135.1	MA0135.1	0.245
MA0136.1	MA0136.1	7.74312e-12
MA0137.2	MA0137.2	0.444
MA0138.2	MA0138.2	0.322
MA0139.1	MA0139.1	0.685
MA0140.1	MA0140.1	0.379
MA0141.1	MA0141.1	0.198
MA0142.1	MA0142.1	0.802
MA0143.1	MA0143.1	0.892
MA0144.1	MA0144.1	0.177
MA0145.1	MA0145.1	0.688
MA0146.1	MA0146.1	0.654
MA0147.1	MA0147.1	0.312
MA0148.1	MA0148.1	0.575
MA0149.1	MA0149.1	0.258
MA0150.1	MA0150.1	6.79015e-21
MA0152.1	MA0152.1	0.946
MA0153.1	MA0153.1	0.00148
MA0154.1	MA0154.1	2.51303e-4
MA0155.1	MA0155.1	0.866
MA0156.1	MA0156.1	9.71287e-8
MA0157.1	MA0157.1	0.872
MA0159.1	MA0159.1	0.0524
MA0160.1	MA0160.1	0.0782
MA0162.1	MA0162.1	0.901
MA0163.1	MA0163.1	1.72668e-7
MA0164.1	MA0164.1	0.653
MA0258.1	MA0258.1	0.02
MA0259.1	MA0259.1	0.968

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs13473

Novel motif	Logo	P-value
1	1	0.113
10	10	0.0196
100	100	0.976
101	101	0.816
102	102	0.997
103	103	0.305
104	104	0.478
105	105	0.083
106	106	7.66745e-4
107	107	0.254
108	108	0.626
109	109	0.38
11	11	0.185
110	110	0.154
111	111	0.0633
112	112	0.366
113	113	0.466
114	114	0.0265
115	115	0.228
116	116	0.99
117	117	0.0626
118	118	0.2
119	119	0.195
12	12	0.353
120	120	0.822
121	121	0.574
122	122	0.646
123	123	0.274
124	124	0.451
125	125	0.284
126	126	0.233
127	127	0.588
128	128	0.0478
129	129	0.46
13	13	0.0756
130	130	0.244
131	131	0.818
132	132	0.0616
133	133	0.564
134	134	0.525
135	135	0.878
136	136	0.96
137	137	0.0414
138	138	0.381
139	139	0.0907
14	14	0.512
140	140	0.277
141	141	0.349
142	142	0.0132
143	143	0.0237
144	144	0.591
145	145	0.298
146	146	0.851
147	147	0.873
148	148	0.00996
149	149	0.866
15	15	0.167
150	150	0.313
151	151	0.471
152	152	0.448
153	153	0.537
154	154	0.665
155	155	0.919
156	156	0.727
157	157	0.506
158	158	0.0391
159	159	0.156
16	16	0.367
160	160	0.401
161	161	0.55
162	162	0.231
163	163	0.0772
164	164	0.106
165	165	0.317
166	166	0.693
167	167	0.213
168	168	0.203
169	169	0.0209
17	17	0.258
18	18	0.103
19	19	0.546
2	2	0.333
20	20	0.151
21	21	0.773
22	22	0.401
23	23	0.049
24	24	0.473
25	25	0.508
26	26	0.0782
27	27	0.382
28	28	0.414
29	29	0.22
3	3	0.142
30	30	0.381
31	31	0.758
32	32	0.402
33	33	0.189
34	34	0.863
35	35	0.0952
36	36	0.0526
37	37	0.0798
38	38	0.372
39	39	0.85
4	4	0.711
40	40	0.17
41	41	0.0129
42	42	0.359
43	43	0.0217
44	44	0.536
45	45	0.838
46	46	0.216
47	47	0.643
48	48	0.582
49	49	0.122
5	5	0.321
50	50	0.97
51	51	0.543
52	52	0.463
53	53	0.636
54	54	0.507
55	55	0.615
56	56	0.685
57	57	0.873
58	58	0.195
59	59	0.314
6	6	0.781
60	60	0.0643
61	61	0.702
62	62	0.115
63	63	0.552
64	64	0.446
65	65	0.237
66	66	0.245
67	67	0.46
68	68	0.718
69	69	0.355
7	7	0.264
70	70	0.0764
71	71	0.0285
72	72	0.149
73	73	0.223
74	74	0.0461
75	75	0.131
76	76	0.112
77	77	0.629
78	78	0.108
79	79	0.611
8	8	0.414
80	80	0.254
81	81	0.323
82	82	0.291
83	83	0.0118
84	84	0.0868
85	85	0.045
86	86	0.0768
87	87	0.575
88	88	0.781
89	89	0.311
9	9	0.421
90	90	0.131
91	91	0.4
92	92	0.427
93	93	0.637
94	94	0.099
95	95	0.377
96	96	0.367
97	97	0.528
98	98	0.107
99	99	0.0391

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs13473

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0011104 human CD14-positive monocytes - treated with Candida sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000766 (myeloid leukocyte)
0000219 (motile cell)
0000325 (stuff accumulating cell)
0000473 (defensive cell)
0000234 (phagocyte)
0000738 (leukocyte)
0002087 (nongranular leukocyte)
0000255 (eukaryotic cell)
0000576 (monocyte)
0000860 (classical monocyte)
0002057 (CD14-positive, CD16-negative classical monocyte)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000625 (experimental infection sample)
0000350 (experimentally modified sample)
0000635 (Candida treatment sample)
0011104 (human CD14-positive monocytes - treated with Candida sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)
CL:0002057 (CD14-positive, CD16-negative classical monocyte)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00005942
+|accession_numbers=CAGE;DRX008141;DRR009013;DRZ000438;DRZ001823;DRZ011788;DRZ013173
 |ancestors_in_anatomy_facet=
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000766,CL:0000219,CL:0000325,CL:0000473,CL:0000234,CL:0000738,CL:0002087,CL:0000255,CL:0000576,CL:0000860,CL:0002057
@@ Line 7: / Line 9: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr2:68592406..68592424,+!p1@PLEK!3.50!3168.56!PLEK;;chr11:47400078..47400106,-!p1@SPI1!2.73!540.56!SPI1;;chr7:115670804..115670825,-!p1@TFEC!2.48!303.72!TFEC;;chr3:101546827..101546847,+!p2@NFKBIZ!2.43!366.46!NFKBIZ;;chr16:85932760..85932775,+!p1@IRF8!2.41!255.46!IRF8;;chr20:39317868..39317884,-!p1@MAFB!2.35!2438.39!MAFB;;chr12:54778471..54778528,-!p1@ZNF385A!2.34!218.22!ZNF385A;;chr12:72056800..72056834,+!p1@THAP2!2.31!272.00!THAP2;;chr2:70142232..70142251,+!p1@MXD1!2.26!960.12!MXD1;;chr10:64018918..64018936,+!p2@ZNF365!2.24!174.44!ZNF365;;chr9:102584262..102584276,+!p1@NR4A3!2.22!357.85!NR4A3;;chr9:102584159..102584174,+!p2@NR4A3!2.22!286.48!NR4A3;;chr3:101568349..101568365,+!p1@NFKBIZ!2.17!7100.38!NFKBIZ;;chr14:35872453..35872485,-!p2@NFKBIA!2.16!336.47!NFKBIA;;chr14:35873947..35873965,-!p1@NFKBIA!2.15!8151.51!NFKBIA;;chr11:47399947..47399961,-!p3@SPI1!2.13!132.38!SPI1;;chr11:47400062..47400077,-!p2@SPI1!2.10!124.11!SPI1;;chr2:157189180..157189290,-!p1@NR4A2!2.07!575.73!NR4A2;;chr6:106534192..106534224,+!p1@PRDM1!2.05!298.55!PRDM1;;chr10:35484053..35484076,+!p1@CREM!2.05!265.11!CREM;;chr19:45971246..45971265,+!p1@FOSB!2.04!1905.75!FOSB;;chr12:72056749..72056767,+!p6@THAP2!2.00!110.32!THAP2;;chr10:64576105..64576133,-!p1@EGR2!1.95!174.79!EGR2;;chr11:47399996..47400014,-!p4@SPI1!1.94!86.19!SPI1;;chr16:31885093..31885165,+!p1@ZNF267!1.93!1213.50!ZNF267;;chr19:36391434..36391450,-!p1@NFKBID!1.91!151.69!NFKBID;;chr4:103422499..103422632,+!p1@NFKB1!1.89!1499.64!NFKB1;;chr10:31288398..31288455,-!p2@ZNF438!1.88!86.53!ZNF438;;chr12:52445218..52445237,+!p1@NR4A1!1.86!847.73!NR4A1;;chr8:22550982..22550999,-!p1@EGR3!1.86!193.75!EGR3;;chr2:145277640..145277771,-!p1@ZEB2!1.85!882.55!ZEB2;;chr12:72056773..72056796,+!p3@THAP2!1.85!90.32!THAP2;;chr2:192015701..192015743,-!p1@STAT4!1.84!93.08!STAT4;;chr9:102584128..102584144,+!p3@NR4A3!1.80!116.18!NR4A3;;chr4:83822199..83822239,+!p2@THAP9!1.80!74.47!THAP9;;chr11:47400032..47400043,-!p5@SPI1!1.80!62.74!SPI1;;chr21:34442439..34442455,+!p1@OLIG1!1.79!60.68!OLIG1;;chr22:38597987..38598021,+!p2@MAFF!1.78!340.61!MAFF;;chr10:104155480..104155534,+!p2@NFKB2!1.76!345.09!NFKB2;;chrX:153305787..153305807,-!p3@MECP2!1.76!56.88!MECP2;;chr2:61108695..61108753,+!p1@REL!1.75!362.67!REL;;chr8:123793988..123794016,+!p1@ZHX2!1.75!96.18!ZHX2;;chr1:37940170..37940190,+!p1@ZC3H12A!1.73!615.72!ZC3H12A;;chr2:68592394..68592405,+!p2@PLEK!1.73!53.09!PLEK;;chr9:102584241..102584261,+!p4@NR4A3!1.72!77.57!NR4A3;;chr2:145275162..145275202,-!p2@ZEB2!1.71!285.45!ZEB2;;chr10:31288370..31288393,-!p3@ZNF438!1.71!49.99!ZNF438;;chr10:51572408..51572454,+!p3@NCOA4!1.69!268.90!NCOA4;;chr6:106534230..106534254,+!p2@PRDM1!1.66!107.91!PRDM1;;chr7:106809470..106809481,+!p2@HBP1!1.66!62.05!HBP1;;chr2:145271342..145271377,-!p5@ZEB2!1.65!43.78!ZEB2;;chr1:212782094..212782109,+!p1@ATF3!1.64!1092.15!ATF3;;chr14:35872962..35873025,-!p3@NFKBIA!1.64!103.42!NFKBIA;;chr9:129567282..129567353,+!p1@ZBTB43!1.61!498.85!ZBTB43;;chr12:54778351..54778378,-!p6@ZNF385A!1.61!39.65!ZNF385A;;chr21:40177845..40177863,+!p1@ETS2!1.60!2173.28!ETS2;;chr14:35872926..35872951,-!p4@NFKBIA!1.60!54.13!NFKBIA;;chr14:35872494..35872511,-!p5@NFKBIA!1.60!51.37!NFKBIA;;chr6:15246200..15246214,+!p2@JARID2!1.59!101.01!JARID2;;chr6:144385698..144385742,-!p2@PLAGL1!1.56!43.09!PLAGL1;;chr9:102584278..102584285,+!p5@NR4A3!1.56!35.51!NR4A3;;chr10:104154246..104154347,+!p3@NFKB2!1.55!202.71!NFKB2;;chr7:50344289..50344323,+!p1@IKZF1!1.55!34.47!IKZF1;;chr6:12012170..12012245,+!p1@HIVEP1!1.54!164.10!HIVEP1;;chrX:129244454..129244488,-!p1@ELF4!1.53!228.91!ELF4;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.53!32.75!ZBED1;;chr13:41593425..41593480,-!p1@ELF1!1.52!194.09!ELF1;;chr19:50432132..50432217,+!p2@ATF5!1.52!38.27!ATF5;;chr21:30671690..30671762,+!p2@BACH1!1.51!103.77!BACH1;;chr4:106066712..106066728,+!p8@TET2!1.51!31.72!TET2;;chrX:153305962..153305995,-!p5@MECP2!1.51!31.03!MECP2;;chr10:35484090..35484104,+!p6@CREM!1.50!30.68!CREM;;chr4:106068026..106068084,+!p1@TET2!1.49!257.53!TET2;;chr1:25256756..25256774,-!p1@RUNX3!1.48!54.47!RUNX3;;chr6:391743..391759,+!p1@IRF4!1.48!29.30!IRF4;;chr21:30673091..30673135,+!p7@BACH1!1.48!28.96!BACH1;;chr2:68615063..68615089,+!p4@PLEK!1.48!28.96!PLEK;;chr4:106066776..106066791,+!p9@TET2!1.48!28.96!TET2;;chr10:51572339..51572376,+!p4@NCOA4!1.47!62.40!NCOA4;;chr2:70167296..70167306,+!p3@MXD1!1.47!42.75!MXD1;;chr4:103423079..103423112,+!p4@NFKB1!1.47!28.27!NFKB1;;chr21:30671235..30671253,+!p1@BACH1!1.46!343.71!BACH1;;chr3:39195037..39195069,-!p2@CSRNP1!1.46!167.20!CSRNP1;;chr5:142782823..142782854,-!p3@NR3C1!1.46!39.30!NR3C1;;chr10:3827371..3827386,-!p2@KLF6!1.45!222.02!KLF6;;chr20:48599506..48599526,+!p1@SNAI1!1.45!170.30!SNAI1;;chr1:38325227..38325246,-!p2@MTF1!1.45!36.54!MTF1;;chr9:110252035..110252057,-!p1@KLF4!1.44!403.70!KLF4;;chr2:28618532..28618610,+!p4@FOSL2!1.44!44.47!FOSL2;;chr18:77155922..77155939,+!p1@NFATC1!1.43!69.98!NFATC1;;chr18:3448455..3448480,+!p5@TGIF1!1.43!47.23!TGIF1;;chr2:191885737..191885750,-!p4@STAT1!1.43!26.20!STAT1;;chr11:47400045..47400060,-!p6@SPI1!1.43!26.20!SPI1;;chr14:35872542..35872553,-!p10@NFKBIA!1.43!26.20!NFKBIA;;chr14:75745523..75745537,+!p1@FOS!1.42!2889.31!FOS;;chr10:35416142..35416169,+!p3@CREM!1.42!65.50!CREM;;chr18:3449330..3449344,+!p10@TGIF1!1.42!33.10!TGIF1;;chr14:35872414..35872425,-!p7@NFKBIA!1.42!27.92!NFKBIA;;chr6:44233252..44233296,-!p1@NFKBIE!1.41!232.36!NFKBIE;;chr19:54041669..54041697,+!p2@ZNF331!1.41!24.48!ZNF331;;chr19:47616992..47617011,-!p4@ZC3H4!1.40!50.33!ZC3H4;;chr17:38497662..38497713,+!p4@RARA!1.40!27.58!RARA;;chr2:28615716..28615733,+!p1@FOSL2!1.39!1066.64!FOSL2;;chr3:12329397..12329433,+!p2@PPARG!1.39!52.40!PPARG;;chr6:126240442..126240459,+!p4@NCOA7!1.39!29.65!NCOA7;;chr19:54058073..54058088,+!p1@ZNF331!1.39!23.79!ZNF331;;chr21:40177892..40177903,+!p2@ETS2!1.38!89.29!ETS2;;chr2:145277882..145277967,-!p3@ZEB2!1.38!39.65!ZEB2;;chr6:12012249..12012266,+!p5@HIVEP1!1.38!39.65!HIVEP1;;chr21:30672433..30672464,+!p6@BACH1!1.38!22.75!BACH1;;chr6:12011943..12012015,+!p2@HIVEP1!1.36!69.64!HIVEP1;;chr3:5020939..5020952,+!p2@BHLHE40!1.36!67.57!BHLHE40;;chr3:39195139..39195150,-!p3@CSRNP1!1.36!27.92!CSRNP1;;chr4:83821967..83821998,+!p3@THAP9!1.36!26.55!THAP9;;chr13:41593392..41593403,-!p7@ELF1!1.36!22.06!ELF1;;chr9:94173455..94173468,-!p4@NFIL3!1.36!21.72!NFIL3;;chr3:150126101..150126118,+!p6@TSC22D2!1.35!34.47!TSC22D2;;chr2:68615031..68615055,+!p3@PLEK!1.35!21.37!PLEK;;chr2:70314240..70314256,+!p4@PCBP1!1.34!42.75!PCBP1;;chr12:72056706..72056717,+!p10@THAP2!1.34!20.68!THAP2;;chr10:104155455..104155479,+!p1@NFKB2!1.33!289.93!NFKB2;;chr10:104155659..104155676,+!p4@NFKB2!1.33!25.51!NFKB2;;chr1:161736038..161736056,+!p4@ATF6!1.31!45.16!ATF6;;chr3:12330560..12330579,+!p1@PPARG!1.31!22.06!PPARG;;chr11:47399920..47399931,-!p7@SPI1!1.31!19.65!SPI1;;chr4:83822294..83822306,+!p8@THAP9!1.31!19.31!THAP9;;chr11:615942..615957,-!p1@IRF7!1.30!173.06!IRF7;;chr18:3449527..3449582,+!p6@TGIF1!1.30!35.51!TGIF1;;chr1:221052776..221052799,+!p1@HLX!1.30!33.44!HLX;;chr8:81397820..81397836,+!p2@ZBTB10!1.30!23.79!ZBTB10;;chr4:106066730..106066754,+!p6@TET2!1.30!18.96!TET2;;chr4:83822246..83822277,+!p5@THAP9!1.30!18.96!THAP9;;chr5:88178983..88179012,-!p1@MEF2C!1.29!140.66!MEF2C;;chr19:45252008..45252024,+!p2@BCL3!1.29!59.64!BCL3;;chr11:65430554..65430579,-!p3@RELA!1.29!46.54!RELA;;chr21:36260295..36260310,-!p3@RUNX1!1.29!29.65!RUNX1;;chr17:40440225..40440268,+!p3@STAT5A!1.29!23.44!STAT5A;;chr10:31288329..31288353,-!p7@ZNF438!1.29!18.62!ZNF438;;chr2:97202480..97202499,+!p1@ARID5A!1.28!179.61!ARID5A;;chr3:39195075..39195088,-!p1@CSRNP1!1.28!110.66!CSRNP1;;chr2:73520667..73520683,-!p1@EGR4!1.28!18.27!EGR4;;chr19:36389839..36389857,-!p4@NFKBID!1.28!17.93!NFKBID;;chr9:88969303..88969335,-!p1@ZCCHC6!1.27!159.27!ZCCHC6;;chr19:45251395..45251432,+!p8@BCL3!1.27!17.58!BCL3;;chr2:8822176..8822196,+!p1@ID2!1.26!2344.62!ID2;;chr6:126240380..126240430,+!p2@NCOA7!1.26!43.78!NCOA7;;chr6:126240463..126240489,+!p6@NCOA7!1.26!19.31!NCOA7;;chr7:17338266..17338282,+!p1@AHR!1.25!175.48!AHR;;chr12:11802753..11802834,+!p2@ETV6!1.25!81.70!ETV6;;chr12:72056684..72056693,+!p13@THAP2!1.25!16.89!THAP2;;chrX:24167086..24167111,+!p4@ZFX!1.25!16.89!ZFX;;chr3:37217736..37217753,-!p2@LRRFIP2!1.24!67.91!LRRFIP2;;chr2:157189617..157189667,-!p4@NR4A2!1.24!16.55!NR4A2;;chr2:192015677..192015691,-!p3@STAT4!1.24!16.55!STAT4;;chr2:231090471..231090504,+!p2@SP140!1.24!16.55!SP140;;chr3:101575889..101575903,+!p3@NFKBIZ!1.24!16.55!NFKBIZ;;chr10:3827389..3827408,-!p1@KLF6!1.23!1202.82!KLF6;;chr6:15246261..15246312,+!p1@JARID2!1.23!383.01!JARID2;;chr7:17338324..17338341,+!p3@AHR!1.23!53.44!AHR;;chr8:116681123..116681143,-!p4@TRPS1!1.22!29.99!TRPS1;;chr2:113999360..113999386,-!p4@PAX8!1.22!15.51!PAX8;;chrX:129244430..129244442,-!p5@ELF4!1.21!15.17!ELF4;;chr5:137804484..137804498,+!p2@EGR1!1.20!59.30!EGR1;;chr2:208394817..208394834,+!p3@CREB1!1.20!58.61!CREB1;;chr10:35484804..35484902,+!p2@CREM!1.20!56.19!CREM;;chr1:221052733..221052749,+!p2@HLX!1.20!19.31!HLX;;chr18:3449618..3449634,+!p13@TGIF1!1.20!18.27!TGIF1;;chr1:156470515..156470542,-!p2@MEF2D!1.19!74.81!MEF2D;;chr2:61108771..61108789,+!p4@REL!1.19!21.72!REL;;chr2:238600998..238601013,+!p5@LRRFIP1!1.19!14.48!LRRFIP1;;chr19:36389729..36389751,-!p3@NFKBID!1.19!14.48!NFKBID;;chr8:53373491..53373506,-!p4@ST18!1.19!14.48!ST18;;chr1:157108130..157108173,-!p1@ETV3!1.18!100.32!ETV3;;chr12:96588219..96588263,+!p2@ELK3!1.18!100.32!ELK3;;chr22:38598086..38598105,+!p1@MAFF!1.17!145.14!MAFF;;chr2:61108808..61108821,+!p3@REL!1.17!17.24!REL;;chr21:40191431..40191450,+!p7@ETS2!1.17!13.79!ETS2;;chr2:145277589..145277612,-!p12@ZEB2!1.17!13.79!ZEB2;;chrX:153305741..153305753,-!p4@MECP2!1.17!13.79!MECP2;;chr14:62162285..62162296,+!p3@HIF1A!1.16!68.95!HIF1A;;chr21:36421535..36421610,-!p2@RUNX1!1.16!47.92!RUNX1;;chr13:41593405..41593416,-!p9@ELF1!1.16!13.45!ELF1;;chr3:170075436..170075520,+!p1@SKIL!1.15!282.00!SKIL;;chr2:70142189..70142223,+!p2@MXD1!1.15!93.08!MXD1;;chr2:238600933..238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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000222;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000234;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000576;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000738;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000763;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000766;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000860;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000988;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002193;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002390;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0002405
 |ffid_belonging_in_development=CL:0000049,CL:0000134,CL:0002057
 |fonse_cell_line=
@@ Line 38: / Line 42: @@
 |fonse_treatment_closure=FF:0000625,FF:0000635,FF:0011104,FF:11868-125B5
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Candida%252c%2520donor1.CNhs13473.11868-125B5.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Candida%252c%2520donor1.CNhs13473.11868-125B5.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Candida%252c%2520donor1.CNhs13473.11868-125B5.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Candida%252c%2520donor1.CNhs13473.11868-125B5.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/CD14%252b%2520monocytes%2520-%2520treated%2520with%2520Candida%252c%2520donor1.CNhs13473.11868-125B5.hg38.nobarcode.ctss.bed.gz
 |id=FF:11868-125B5
 |is_a=EFO:0002091;;FF:0011104
 |is_obsolete=
+|library_id=CNhs13473
+|library_id_phase_based=2:CNhs13473
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11868
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11868
 |name=CD14+ monocytes - treated with Candida, donor1
 |namespace=
@@ Line 46: / Line 61: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs13473,LSID1024,release012,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=,,,
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 |rna_box=125
@@ Line 62: / Line 79: @@
 |rna_weight_ug=4.0296
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+|sample_category=primary cells
 |sample_cell_catalog=
 |sample_cell_line=
@@ Line 83: / Line 101: @@
 |top_motifs=FOSL2:6.6547483015;FOS_FOS{B,L1}_JUN{B,D}:6.61195823621;BACH2:6.50403725152;NFE2:6.06738742754;HLF:6.03842711658;CEBPA,B_DDIT3:5.25486468868;NFE2L2:5.15724028733;PAX2:4.93935997125;NFKB1_REL_RELA:4.67240933402;NFIL3:4.4571400135;FOXP3:3.94439551436;SREBF1,2:3.83113163978;SPIB:3.7555491577;IRF1,2:3.65802172217;ATF5_CREB3:3.65784075468;ATF4:3.60887016535;SPI1:3.38628212686;NR1H4:3.32950840829;NFATC1..3:3.32173277597;IRF7:3.3020282177;PAX8:3.2944926342;NANOG{mouse}:3.18497124117;NFE2L1:3.17776430604;DMAP1_NCOR{1,2}_SMARC:3.17220768794;ETS1,2:3.01451790897;HSF1,2:2.9996010408;JUN:2.86986671179;CREB1:2.80451665813;HMGA1,2:2.71062751808;ATF6:2.70238930499;RUNX1..3:2.64682258548;PAX3,7:2.60340768601;MAFB:2.36314473995;ATF2:2.16061039404;STAT2,4,6:2.03302473958;STAT5{A,B}:2.0315028391;PAX1,9:2.03071573782;FOXN1:1.97866454604;HOX{A5,B5}:1.92444571462;HIF1A:1.69507885352;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.60953713198;FOXO1,3,4:1.34566823099;TGIF1:1.31325197113;BPTF:1.28691665082;CDX1,2,4:1.26586523786;XBP1:1.25755526066;RXRA_VDR{dimer}:1.24620533132;IKZF1:1.04595298721;ELF1,2,4:0.914435005908;DBP:0.859663486846;EN1,2:0.84201763227;ZBTB16:0.794782126656;EP300:0.790219818064;PDX1:0.687732190798;ALX4:0.572271963522;PPARG:0.540219791209;PAX4:0.531169256171;PRDM1:0.524557554657;TBP:0.423525715386;GLI1..3:0.378179253713;RORA:0.340350165676;NR3C1:0.337594296318;SRF:0.337335342767;PITX1..3:0.205833559438;VSX1,2:0.183970947009;NANOG:0.181228891664;POU2F1..3:0.150396639712;HMX1:0.13370156697;FOXL1:0.0863355116537;POU3F1..4:0.0378501612343;OCT4_SOX2{dimer}:-0.0120934506742;HBP1_HMGB_SSRP1_UBTF:-0.0439424266004;MEF2{A,B,C,D}:-0.0732875834287;FOXD3:-0.114480232384;IKZF2:-0.162790262351;TLX2:-0.193653248378;POU5F1:-0.200606839252;RFX2..5_RFXANK_RFXAP:-0.223486509135;HES1:-0.247151880205;HOXA9_MEIS1:-0.293331557984;NKX2-1,4:-0.363402000922;MYB:-0.392811588858;EGR1..3:-0.396886499332;ESR1:-0.397945708665;FOX{D1,D2}:-0.453072798629;NR6A1:-0.459350113805;GATA4:-0.544173483541;TFCP2:-0.632599934447;AHR_ARNT_ARNT2:-0.660803215156;RBPJ:-0.676340465673;NKX3-1:-0.72256794247;FOXM1:-0.727376854289;FOXP1:-0.798670938643;SMAD1..7,9:-0.874706234633;RXR{A,B,G}:-0.895042912843;T:-0.980466020851;NFIX:-1.00032745064;MZF1:-1.00138201207;SOX2:-1.00592118217;PAX6:-1.09605843695;POU6F1:-1.16382187054;STAT1,3:-1.31686511617;TAL1_TCF{3,4,12}:-1.32181528486;SPZ1:-1.35228385909;MED-1{core}:-1.35475421619;REST:-1.35485952152;TBX4,5:-1.37714974288;NKX6-1,2:-1.42908754214;NKX2-2,8:-1.43143706599;HNF1A:-1.46082756044;ALX1:-1.49836651553;ZNF384:-1.58963465075;PRRX1,2:-1.61501567899;ZNF238:-1.63927284152;BREu{core}:-1.64471811929;GZF1:-1.6515246447;RFX1:-1.67431756035;ESRRA:-1.67704742861;SOX5:-1.68219645716;HNF4A_NR2F1,2:-1.68805424266;NHLH1,2:-1.69224125479;ARID5B:-1.72473446769;MYFfamily:-1.72474322893;E2F1..5:-1.72954968547;TFAP4:-1.75093297006;TEF:-1.75558436953;TFDP1:-1.75733148774;ZFP161:-1.76630030634;ADNP_IRX_SIX_ZHX:-1.8093634107;HOX{A4,D4}:-1.82186832926;GATA6:-1.83528542977;CDC5L:-1.85642395687;FOXA2:-1.89008896426;MTE{core}:-1.89198838213;SP1:-1.90551294033;TEAD1:-1.94125697524;GTF2A1,2:-1.98758829373;SOX{8,9,10}:-1.99032226506;CUX2:-2.00676678769;CRX:-2.05125136091;ZBTB6:-2.11248851982;MAZ:-2.11580629924;RXR{A,B,G}_{NR1H2,PPAR}dimers:-2.12172496929;PATZ1:-2.12250165689;NKX2-3_NKX2-5:-2.15791569252;TFAP2B:-2.16323616357;TP53:-2.18592115903;MTF1:-2.19528041885;GTF2I:-2.27629582712;HOX{A6,A7,B6,B7}:-2.27773698154;GCM1,2:-2.39260982033;AIRE:-2.42984845408;ONECUT1,2:-2.43326854817;ZIC1..3:-2.44048846447;XCPE1{core}:-2.45934842734;FOX{F1,F2,J1}:-2.47326644758;NKX3-2:-2.50239040643;TLX1..3_NFIC{dimer}:-2.51222396138;MYBL2:-2.52406609044;RREB1:-2.53438243608;NFY{A,B,C}:-2.53616426525;TFAP2{A,C}:-2.59522039922;ZEB1:-2.62609914466;HIC1:-2.63773957997;GFI1B:-2.68173953674;ELK1,4_GABP{A,B1}:-2.68446442519;SNAI1..3:-2.74560862045;FOX{I1,J2}:-2.76560004772;ZNF148:-2.80940918811;SOX17:-2.8304881213;bHLH_family:-2.85079786538;UFEwm:-2.86409755158;PBX1:-2.98120808071;EBF1:-2.99800703601;MYOD1:-3.13888143694;EVI1:-3.17173700348;KLF4:-3.19486391981;FOXQ1:-3.30067528635;POU1F1:-3.402266184;NR5A1,2:-3.40784389604;NRF1:-3.52214731944;GFI1:-3.53518988011;LMO2:-3.64969161551;PAX5:-3.6501551618;ZNF423:-3.67946291854;AR:-3.80941823382;LEF1_TCF7_TCF7L1,2:-3.97524922516;LHX3,4:-4.00975962812;YY1:-4.06795013944;TOPORS:-4.11176793461;HAND1,2:-4.29303978579;ZNF143:-4.36345391839
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11868-125B5;search_select_hide=table117:FF:11868-125B5
 }}

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FF:11868-125B5: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 18:24, 4 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0