FF:11251-116E9: Difference between revisions

Latest revision as of 16:28, 3 June 2020

Name:	Keratinocyte - oral, donor1
Species:	Human (Homo sapiens)
Library ID:	CNhs10879
Sample type:	primary cells
Genomic View:	UCSC
RefEX:	Specific genes
FANTOM CAT:	1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
CAGEd-oPOSSUM:	link
ZENBU report :	link

Additional information

Sample information

strain	NA
tissue	gum
dev stage	NA
sex	unknown
age	NA
cell type	keratinocyte
cell line	NA
company	Sciencell/3H
collaboration	FANTOM5 OSC CORE (contact: Al Forrest)
External link for information	[{{{sample_info_link}}} {{{sample_info_link}}}]

RNA information

lot number	lot:4853
catalog number	Sciencell(2615)
sample type	total RNA
extraction protocol (Details)	OP-RNA-extraction-totalRNA-TRIzol-isopropanol-v1.0

CAGE Accession numbers

Method		Sample accession id
CAGE		SAMD00004992

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
CNhs10879		CAGE		DRX008315		DRR009187

Accession ID Hg19

Library id		BAM		CTSS
CNhs10879		DRZ000612		DRZ001997

Accession ID Hg38

Library id		BAM		CTSS
CNhs10879		DRZ011962		DRZ013347

Download raw sequence, BAM & CTSS

Hg19

Fasta	BAM	CTSS
download	download	donwload

Hg38

BAM	CTSS
download	donwload

RNA-Seq Accession numbers

Method		Sample accession id
sRNA-Seq		SAMD00004992

Library accession numbers

Library id		Method		Exp. accession id		Run accession id
SRhi10004.GCCAAT		sRNA-Seq		DRX037036		DRR041402

Accession ID Hg19

Library id		BAM		CTSS
SRhi10004.GCCAAT		DRZ007044

Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.

Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. Analyst:NA link to dataset. data

Coexpression cluster	score
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral	0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate	0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural	0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial	0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel	0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS	0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils	0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural	0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis	-0.115
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy	0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood	0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate	0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma	0.187
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial	0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic	0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat	0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal	0
C113-thyroid-throat-lung-lymph-small-colon-trachea	0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma	0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus	0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea	0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal	0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula	0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD19	0
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils	0
C120-immature-salivary-tongue-skin-cervical-CD14-CD34	0
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B	0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal	0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils	0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte	0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus	0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain	0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil	0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP	0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small	0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD4	0
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar	0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin	0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived	0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma	0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis	0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum	0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal	0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic	0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal	0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal	0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen	0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen	0
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B	0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair	0.263
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast	0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis	0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal	0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell	0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral	0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal	0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum	0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue	0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small	0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast	0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung	0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular	0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate	0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid	0
C156-plasma-splenic-hereditary-B-large-xeroderma-b	0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea	0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen	0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal	0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain	0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral	0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta	0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon	0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal	0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma	0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial	0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung	0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD4	0
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral	0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma	0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage	0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet	0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye	0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes	0.106
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose	0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils	0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural	-0.00492
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD19	-0.0536
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous	0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus	0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil	0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood	0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle	-0.157
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar	0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute	0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt	0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid	0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis	0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid	0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage	0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat	0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen	0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma	0
C190-colon-small-rectum-duodenum-appendix-temporal-oral	0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic	0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD4	0
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD14	0
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar	0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal	0.0385
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial	0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival	0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes	0
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma	0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast	0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat	0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed	-0.197
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall	0
C202-salivary-skin-penis-tongue-uterus-cervical-immature	0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic	0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD34	0
C205-mycosis-cord-hairy-xeroderma-CD4-B-b	0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary	0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte	0.823
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous	0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen	0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic	0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil	0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney	0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD34	0
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral	0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain	0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature	0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD34	0
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital	0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary	0
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum	0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD19	0
C220-Adipocyte-mature-left-breast-skin-liver-adipose	0
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular	0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte	-0.263
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte	0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal	0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal	0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal	1.024
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue	0.325
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult	0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart	0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD14	0
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung	0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis	0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum	0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF7	0
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma	0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas	0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma	0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial	0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell	0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy	0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral	0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal	0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus	-0.0484
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach	0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing	0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage	0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic	0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory	0
C247-pons-locus-medulla-spinal-paracentral-medial-occipital	0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast	0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial	0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall	0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD4	0.0159
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue	0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma	0
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum	0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris	0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast	0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla	0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral	0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric	0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing	0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole	0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood	0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal	0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms	0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil	0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute	0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD8	-0.0239
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast	0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear	0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate	0.426
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD4	0
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung	0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth	0.0503
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum	0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil	0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast	0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte	0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal	0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal	0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma	0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory	0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial	0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic	0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD4	0
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small	0.13
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat	0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular	0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus	0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic	0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial	0
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal	0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal	0
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left	0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart	0
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature	0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea	0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal	0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD34	0
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral	0
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte	0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed	0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral	0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital	0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood	0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala	0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal	0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils	0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic	0.137
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid	0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole	0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus	0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea	0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory	0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen	0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile	0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula	0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt	0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea	0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms	0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD133	0
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus	0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small	0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal	0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon	0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder	0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature	0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS	0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel	0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix	0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus	0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma	0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas	0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma	0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas	0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma	0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary	0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature	0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma	0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue	0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural	0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H9	0
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic	0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature	0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical	0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b	0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph	0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute	0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic	0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils	0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus	0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung	0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma	0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK	0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast	0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue	0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate	0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left	0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal	0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy	0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral	0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell	0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD8	0
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea	0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal	0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD34	0
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast	0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid	0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD34	0
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic	0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon	0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma	0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma	0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic	0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived	0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic	0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left	0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen	0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair	0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole	0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular	0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma	0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid	0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix	0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain	0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole	0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid	0

Repeat families with enriched expression in this sampleSummary:Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed. Analyst:NA link to dataset. data

TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifsSummary:Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10879

Jaspar motif	Logo	P-value
MA0002.2	MA0002.2	0.0139
MA0003.1	MA0003.1	0.899
MA0004.1	MA0004.1	0.197
MA0006.1	MA0006.1	0.15
MA0007.1	MA0007.1	0.924
MA0009.1	MA0009.1	0.271
MA0014.1	MA0014.1	0.392
MA0017.1	MA0017.1	0.751
MA0018.2	MA0018.2	6.5816e-5
MA0019.1	MA0019.1	0.915
MA0024.1	MA0024.1	0.361
MA0025.1	MA0025.1	0.331
MA0027.1	MA0027.1	0.413
MA0028.1	MA0028.1	0.405
MA0029.1	MA0029.1	0.399
MA0030.1	MA0030.1	0.169
MA0031.1	MA0031.1	0.345
MA0035.2	MA0035.2	0.584
MA0038.1	MA0038.1	0.583
MA0039.2	MA0039.2	0.0022
MA0040.1	MA0040.1	0.0467
MA0041.1	MA0041.1	0.619
MA0042.1	MA0042.1	0.483
MA0043.1	MA0043.1	0.0468
MA0046.1	MA0046.1	0.752
MA0047.2	MA0047.2	0.657
MA0048.1	MA0048.1	0.842
MA0050.1	MA0050.1	4.25605e-7
MA0051.1	MA0051.1	0.00178
MA0052.1	MA0052.1	0.029
MA0055.1	MA0055.1	0.0213
MA0057.1	MA0057.1	0.265
MA0058.1	MA0058.1	0.0218
MA0059.1	MA0059.1	0.938
MA0060.1	MA0060.1	0.727
MA0061.1	MA0061.1	0.603
MA0062.2	MA0062.2	0.0949
MA0065.2	MA0065.2	0.221
MA0066.1	MA0066.1	0.271
MA0067.1	MA0067.1	0.00491
MA0068.1	MA0068.1	0.00731
MA0069.1	MA0069.1	0.161
MA0070.1	MA0070.1	0.887
MA0071.1	MA0071.1	0.101
MA0072.1	MA0072.1	0.114
MA0073.1	MA0073.1	0.716
MA0074.1	MA0074.1	0.663
MA0076.1	MA0076.1	0.488
MA0077.1	MA0077.1	0.659
MA0078.1	MA0078.1	0.859
MA0079.2	MA0079.2	0.319
MA0080.2	MA0080.2	5.64225e-6
MA0081.1	MA0081.1	0.0281
MA0083.1	MA0083.1	0.0802
MA0084.1	MA0084.1	0.351
MA0087.1	MA0087.1	0.797
MA0088.1	MA0088.1	0.296
MA0090.1	MA0090.1	0.00148
MA0091.1	MA0091.1	0.1
MA0092.1	MA0092.1	0.43
MA0093.1	MA0093.1	0.125
MA0099.2	MA0099.2	3.58414e-4
MA0100.1	MA0100.1	0.943
MA0101.1	MA0101.1	0.13
MA0102.2	MA0102.2	0.445
MA0103.1	MA0103.1	3.66438e-7
MA0104.2	MA0104.2	0.68
MA0105.1	MA0105.1	0.629
MA0106.1	MA0106.1	4.35335e-13
MA0107.1	MA0107.1	0.091
MA0108.2	MA0108.2	0.0817
MA0111.1	MA0111.1	0.435
MA0112.2	MA0112.2	0.725
MA0113.1	MA0113.1	0.683
MA0114.1	MA0114.1	0.224
MA0115.1	MA0115.1	0.47
MA0116.1	MA0116.1	0.423
MA0117.1	MA0117.1	0.274
MA0119.1	MA0119.1	0.295
MA0122.1	MA0122.1	0.857
MA0124.1	MA0124.1	0.693
MA0125.1	MA0125.1	0.0299
MA0131.1	MA0131.1	0.388
MA0135.1	MA0135.1	0.284
MA0136.1	MA0136.1	0.00455
MA0137.2	MA0137.2	0.179
MA0138.2	MA0138.2	0.153
MA0139.1	MA0139.1	0.702
MA0140.1	MA0140.1	0.263
MA0141.1	MA0141.1	0.236
MA0142.1	MA0142.1	0.22
MA0143.1	MA0143.1	0.243
MA0144.1	MA0144.1	0.834
MA0145.1	MA0145.1	0.0492
MA0146.1	MA0146.1	0.186
MA0147.1	MA0147.1	0.493
MA0148.1	MA0148.1	0.18
MA0149.1	MA0149.1	0.26
MA0150.1	MA0150.1	0.0783
MA0152.1	MA0152.1	0.988
MA0153.1	MA0153.1	0.984
MA0154.1	MA0154.1	0.448
MA0155.1	MA0155.1	0.738
MA0156.1	MA0156.1	0.0148
MA0157.1	MA0157.1	0.165
MA0159.1	MA0159.1	0.663
MA0160.1	MA0160.1	0.0877
MA0162.1	MA0162.1	0.355
MA0163.1	MA0163.1	0.796
MA0164.1	MA0164.1	0.992
MA0258.1	MA0258.1	0.222
MA0259.1	MA0259.1	0.866

FANTOM5 phase1 novel unique motifsSummary:Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above Analyst: Michiel de Hoon link to dataset. data

library id: CNhs10879

Novel motif	Logo	P-value
1	1	0.837
10	10	0.58
100	100	0.938
101	101	0.445
102	102	0.197
103	103	0.115
104	104	0.905
105	105	0.0495
106	106	0.959
107	107	0.0384
108	108	0.735
109	109	0.00478
11	11	0.487
110	110	0.18
111	111	0.358
112	112	0.874
113	113	0.815
114	114	0.717
115	115	0.603
116	116	0.419
117	117	0.329
118	118	0.528
119	119	0.981
12	12	0.792
120	120	0.00202
121	121	0.819
122	122	0.397
123	123	0.162
124	124	0.207
125	125	0.675
126	126	0.339
127	127	0.602
128	128	0.982
129	129	0.0573
13	13	0.0247
130	130	0.341
131	131	0.443
132	132	0.0926
133	133	5.39545e-4
134	134	0.0751
135	135	0.789
136	136	0.0121
137	137	0.144
138	138	0.941
139	139	0.0503
14	14	0.919
140	140	0.49
141	141	0.45
142	142	0.226
143	143	0.325
144	144	0.407
145	145	0.252
146	146	0.0288
147	147	0.369
148	148	0.0798
149	149	0.673
15	15	0.199
150	150	0.532
151	151	0.578
152	152	0.212
153	153	0.382
154	154	0.515
155	155	0.942
156	156	0.957
157	157	0.987
158	158	0.133
159	159	0.361
16	16	0.111
160	160	0.0506
161	161	0.231
162	162	0.14
163	163	0.806
164	164	0.883
165	165	0.911
166	166	0.446
167	167	0.16
168	168	0.461
169	169	0.194
17	17	0.221
18	18	0.916
19	19	0.605
2	2	0.0829
20	20	0.936
21	21	0.937
22	22	0.479
23	23	0.7
24	24	0.00153
25	25	0.949
26	26	0.745
27	27	0.62
28	28	0.608
29	29	0.339
3	3	0.539
30	30	0.0454
31	31	0.997
32	32	0.105
33	33	0.0914
34	34	0.728
35	35	0.125
36	36	0.45
37	37	0.832
38	38	0.418
39	39	0.255
4	4	0.84
40	40	0.159
41	41	0.115
42	42	0.489
43	43	0.948
44	44	0.405
45	45	0.0444
46	46	0.788
47	47	0.398
48	48	0.173
49	49	0.22
5	5	0.467
50	50	0.351
51	51	0.675
52	52	0.544
53	53	0.435
54	54	0.979
55	55	0.653
56	56	0.481
57	57	0.438
58	58	0.825
59	59	0.556
6	6	0.122
60	60	0.809
61	61	0.934
62	62	0.724
63	63	0.335
64	64	0.626
65	65	0.738
66	66	0.423
67	67	0.316
68	68	0.129
69	69	0.743
7	7	0.51
70	70	0.2
71	71	0.904
72	72	0.527
73	73	0.153
74	74	0.0293
75	75	0.242
76	76	0.782
77	77	0.0414
78	78	0.0335
79	79	0.248
8	8	0.512
80	80	0.106
81	81	0.322
82	82	0.786
83	83	0.276
84	84	0.637
85	85	0.747
86	86	0.259
87	87	0.21
88	88	0.572
89	89	0.267
9	9	0.753
90	90	0.925
91	91	0.989
92	92	0.707
93	93	0.882
94	94	0.831
95	95	0.146
96	96	0.328
97	97	0.867
98	98	0.75
99	99	0.0382

de novo motifs identified by HOMER in promoters active in this sampleSummary:The result of HOMER in this sample is shown. Analyst:NA library id: CNhs10879

FANTOM5 (FF) ontology

Direct parent terms

is_a relathionship
EFO:0002091 biological replicate
FF:0000083 human oral mucosa keratinocyte sample

Ancestor terms (non development)Summary:Connected ontology terms with is_a, part_of or located_in relationship Analyst: Hideya Kawaji link to source data data

CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000066 (epithelial cell)
0002371 (somatic cell)
0000076 (squamous epithelial cell)
0000325 (stuff accumulating cell)
0000240 (stratified squamous epithelial cell)
0000311 (keratin accumulating cell)
0000079 (stratified epithelial cell)
0000237 (keratinizing barrier epithelial cell)
0000255 (eukaryotic cell)
0002076 (endo-epithelial cell)
0002336 (buccal mucosa cell)
0002251 (epithelial cell of alimentary canal)
0002261 (endothelial cell of viscerocranial mucosa)
0002170 (keratinized cell of the oral mucosa)

UBERON: Anatomy
0000468 (multi-cellular organism)
0000033 (head)
0001007 (digestive system)
0000344 (mucosa)
0004121 (ectoderm-derived structure)
0000064 (organ part)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000481 (multi-tissue structure)
0004923 (organ component layer)
0001444 (subdivision of head)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0003729 (mouth mucosa)
0010317 (germ layer / neural crest derived structure)
0001555 (digestive tract)
0000153 (anterior region of body)
0007811 (craniocervical region)
0000165 (mouth)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000002 (in vivo cell sample)
0000101 (sample by species)
0000001 (sample)
0000083 (human oral mucosa keratinocyte sample)

Ancestor terms (development)Summary:Connected ontology terms with develops_from, derives_from or preceded_by relationship Analyst: Hideya Kawaji link to source data data
CL:0000357 (stratified epithelial stem cell)
CL:0000223 (endodermal cell)
CL:0000114 (surface ectodermal cell)
CL:0000221 (ectodermal cell)

@@ Line 1: / Line 1: @@
 {{f5samples
+|DRA_sample_Accession=CAGE@SAMD00004992
+|DRA_sample_Accession_RNASeq=sRNA-Seq@SAMD00004992
+|accession_numbers=CAGE;DRX008315;DRR009187;DRZ000612;DRZ001997;DRZ011962;DRZ013347
+|accession_numbers_RNASeq=sRNA-Seq;DRX037036;DRR041402;DRZ007044
 |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0000033,UBERON:0001007,UBERON:0000344,UBERON:0004121,UBERON:0000064,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000481,UBERON:0004923,UBERON:0001444,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0003729,UBERON:0010317,UBERON:0001555,UBERON:0000153,UBERON:0007811,UBERON:0000165
 |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000066,CL:0002371,CL:0000076,CL:0000325,CL:0000240,CL:0000311,CL:0000079,CL:0000237,CL:0000255,CL:0002076,CL:0002336,CL:0002251,CL:0002261,CL:0002170
@@ Line 7: / Line 11: @@
 |created_by=
 |creation_date=
-|datafreeze_phase=1
+|data_phase=2
+|datafreeze_phase=2
 |def=
 |expression_enrichment_score=chr1:209979467..209979494,-!p1@IRF6!2.22!182.77!IRF6;;chr17:7493405..7493419,-!p1@SOX15!2.21!159.53!SOX15;;chr3:189507432..189507459,+!p1@TP63!2.16!144.16!TP63;;chr12:66218255..66218304,+!p3@HMGA2!1.92!212.12!HMGA2;;chr11:34642612..34642646,+!p1@EHF!1.89!76.20!EHF;;chr15:83953397..83953425,-!p1@BNC1!1.81!72.77!BNC1;;chr1:209979411..209979433,-!p2@IRF6!1.78!59.72!IRF6;;chr3:111314186..111314204,-!p1@ZBED2!1.70!48.70!ZBED2;;chr5:134369905..134369972,-!p1@PITX1!1.68!70.92!PITX1;;chr5:134369879..134369898,-!p2@PITX1!1.64!42.96!PITX1;;chr12:54785074..54785122,-!p2@ZNF385A!1.60!58.05!ZNF385A;;chr6:10415276..10415341,-!p2@TFAP2A!1.58!44.44!TFAP2A;;chr12:66218598..66218645,+!p2@HMGA2!1.56!157.59!HMGA2;;chr17:7492684..7492778,-!p2@SOX15!1.55!70.74!SOX15;;chr12:66218212..66218244,+!p5@HMGA2!1.54!48.52!HMGA2;;chr1:6479968..6479986,-!p1@HES2!1.54!33.98!HES2;;chr12:66218183..66218209,+!p4@HMGA2!1.51!59.44!HMGA2;;chr6:10412600..10412637,-!p1@TFAP2A!1.49!49.63!TFAP2A;;chr12:54785054..54785072,-!p4@ZNF385A!1.40!27.41!ZNF385A;;chr13:73633131..73633149,+!p1@KLF5!1.36!227.12!KLF5;;chr8:10588010..10588030,-!p1@SOX7!1.35!21.20!SOX7;;chr15:101069113..101069169,-!p1@CERS3!1.31!19.63!CERS3;;chr9:100615499..100615519,+!p1@FOXE1!1.31!19.26!FOXE1;;chr8:102504651..102504683,+!p1@GRHL2!1.29!18.52!GRHL2;;chr9:96717629..96717644,-!p1@BARX1!1.26!17.22!BARX1;;chr6:10415484..10415508,-!p3@TFAP2A!1.24!16.57!TFAP2A;;chr12:66218836..66218888,+!p1@HMGA2!1.23!147.22!HMGA2;;chr22:19748231..19748317,+!p1@TBX1!1.23!16.02!TBX1;;chr1:158979792..158979814,+!p2@IFI16!1.20!141.29!IFI16;;chr6:10419768..10419819,-!p6@TFAP2A!1.20!14.91!TFAP2A;;chr12:66218378..66218401,+!p6@HMGA2!1.15!20.28!HMGA2;;chr19:45908292..45908374,-!p1@PPP1R13L!1.14!111.94!PPP1R13L;;chr8:128747661..128747703,+!p6@MYC!1.12!16.67!MYC;;chr8:128748308..128748324,+!p2@MYC!1.11!325.45!MYC;;chr3:111314230..111314241,-!p2@ZBED2!1.10!11.57!ZBED2;;chr14:37131058..37131139,+!p1@PAX9!1.09!11.39!PAX9;;chr5:2751762..2751784,-!p1@IRX2!1.09!11.20!IRX2;;chr17:80797886..80797906,-!p1@ZNF750!1.08!11.02!ZNF750;;chr12:66218443..66218461,+!p8@HMGA2!1.07!13.80!HMGA2;;chr12:66357214..66357233,+!p13@HMGA2!1.06!10.56!HMGA2;;chr12:66218573..66218596,+!p7@HMGA2!1.04!14.91!HMGA2;;chr3:189507460..189507471,+!p3@TP63!1.02!9.54!TP63;;chr1:24645832..24645853,+!p1@GRHL3!1.02!9.35!GRHL3;;chr8:49833948..49833973,-!p2@SNAI2!1.00!58.79!SNAI2;;chr2:60780607..60780624,-!p2@BCL11A!1.00!27.96!BCL11A;;chr12:66218420..66218439,+!p12@HMGA2!1.00!8.89!HMGA2;;chr12:66218003..66218018,+!p9@HMGA2!0.99!10.74!HMGA2;;chr2:46524897..46524911,+!p2@EPAS1!0.98!24.35!EPAS1;;chr4:188916918..188916942,+!p1@ZFP42!0.98!8.52!ZFP42;;chr12:66218469..66218477,+!p16@HMGA2!0.98!8.52!HMGA2;;chr8:49833978..49833996,-!p1@SNAI2!0.97!175.55!SNAI2;;chr6:126240380..126240430,+!p2@NCOA7!0.97!22.04!NCOA7;;chr6:10412576..10412599,-!p5@TFAP2A!0.97!8.33!TFAP2A;;chr11:129245526..129245553,+!p1@BARX2!0.97!8.33!BARX2;;chr1:209979449..209979460,-!p3@IRF6!0.97!8.24!IRF6;;chr16:79634624..79634642,-!p1@MAF!0.93!30.28!MAF;;chr4:299227..299272,-!p1@ZNF732!0.92!7.31!ZNF732;;chr2:63277948..63277974,+!p1@OTX1!0.91!7.22!OTX1;;chr6:106546808..106546833,+!p3@PRDM1!0.90!8.89!PRDM1;;chr9:2158443..2158481,+!p2@SMARCA2!0.87!18.89!SMARCA2;;chr4:111544219..111544240,-!p1@PITX2!0.87!6.39!PITX2;;chr11:47236584..47236679,+!p1@DDB2!0.86!72.22!DDB2;;chr2:178128149..178128198,-!p2@NFE2L2!0.86!35.37!NFE2L2;;chr19:42636586..42636607,-!p1@POU2F2!0.86!18.24!POU2F2;;chr17:41623009..41623053,-!p4@ETV4!0.86!10.37!ETV4;;chr12:66218152..66218174,+!p10@HMGA2!0.86!6.76!HMGA2;;chr11:65667884..65667895,-!p2@FOSL1!0.85!25.09!FOSL1;;chr1:24645921..24645973,+!p2@GRHL3!0.85!6.02!GRHL3;;chr15:83953373..83953386,-!p2@BNC1!0.85!6.02!BNC1;;chr2:208030647..208030689,-!p1@KLF7!0.84!52.59!KLF7;;chr2:60778035..60778060,-!p4@BCL11A!0.83!7.04!BCL11A;;chr17:8027418..8027432,-!p1@HES7!0.83!5.83!HES7;;chr21:38071430..38071456,+!p1@SIM2!0.83!5.83!SIM2;;chr6:29648890..29648944,-!p1@ZFP57!0.82!5.65!ZFP57;;chr14:29235961..29236008,+!p1@FOXG1!0.81!5.46!FOXG1;;chr20:55204351..55204377,+!p1@TFAP2C!0.80!6.94!TFAP2C;;chr8:128747709..128747723,+!p20@MYC!0.80!5.37!MYC;;chr5:2751785..2751808,-!p2@IRX2!0.80!5.28!IRX2;;chr11:34642656..34642667,+!p2@EHF!0.80!5.28!EHF;;chr2:5832508..5832524,+!p1@SOX11!0.79!5.18!SOX11;;chr6:126240356..126240379,+!p7@NCOA7!0.78!6.30!NCOA7;;chr15:67458836..67458859,+!p22@SMAD3!0.78!5.00!SMAD3;;chr2:85360499..85360598,+!p1@TCF7L1!0.77!29.63!TCF7L1;;chr19:2867325..2867348,+!p1@ZNF556!0.77!4.91!ZNF556;;chr20:22565370..22565388,-!p2@FOXA2!0.76!4.81!FOXA2;;chr3:189507523..189507535,+!p5@TP63!0.76!4.81!TP63;;chr12:66358080..66358094,+!p15@HMGA2!0.75!4.63!HMGA2;;chr6:34204672..34204692,+!p1@HMGA1!0.74!570.62!HMGA1;;chr13:41593425..41593480,-!p1@ELF1!0.74!31.48!ELF1;;chr6:34524093..34524135,-!p1@SPDEF!0.74!4.54!SPDEF;;chr1:158979872..158979898,+!p3@IFI16!0.73!14.91!IFI16;;chr3:181429704..181429722,+!p1@SOX2!0.73!4.35!SOX2;;chr1:24646263..24646277,+!p4@GRHL3!0.71!4.17!GRHL3;;chr17:41623692..41623715,-!p1@ETV4!0.70!19.35!ETV4;;chr2:122042770..122042785,-!p1@TFCP2L1!0.70!3.98!TFCP2L1;;chr4:57522598..57522664,-!p3@HOPX!0.70!3.98!HOPX;;chr21:40177845..40177863,+!p1@ETS2!0.69!266.93!ETS2;;chr17:41623259..41623278,-!p7@ETV4!0.69!4.63!ETV4;;chr11:65554528..65554546,+!p1@OVOL1!0.69!3.89!OVOL1;;chr12:27485762..27485776,+!p3@ARNTL2!0.68!11.30!ARNTL2;;chr1:158979851..158979865,+!p5@IFI16!0.68!9.17!IFI16;;chr1:40367530..40367597,-!p1@MYCL1!0.68!7.31!MYCL1;;chr2:46524878..46524891,+!p3@EPAS1!0.68!7.22!EPAS1;;chr16:79633894..79633954,-!p3@MAF!0.67!7.68!MAF;;chr1:37940170..37940190,+!p1@ZC3H12A!0.66!51.66!ZC3H12A;;chr2:60780753..60780800,-!p1@BCL11A!0.66!20.37!BCL11A;;chr17:38465413..38465438,+!p5@RARA!0.66!6.02!RARA;;chr6:10412392..10412409,-!p4@TFAP2A!0.66!4.17!TFAP2A;;chr2:169312600..169312606,+!p2@CERS6!0.65!5.83!CERS6;;chr8:28243785..28243799,-!p6@ZNF395!0.65!4.35!ZNF395;;chr5:3595977..3595999,+!p1@IRX1!0.65!3.52!IRX1;;chr15:67458861..67458879,+!p17@SMAD3!0.65!3.52!SMAD3;;chr20:18038521..18038571,-!p1@OVOL2!0.65!3.52!OVOL2;;chr17:17726907..17726958,-!p2@SREBF1!0.64!24.35!SREBF1;;chr4:57522166..57522260,-!p2@HOPX!0.64!3.98!HOPX;;chr4:57547454..57547469,-!p1@HOPX!0.64!3.33!HOPX;;chr14:21566731..21566836,-!p1@ZNF219!0.63!41.66!ZNF219;;chr5:137804484..137804498,+!p2@EGR1!0.63!15.00!EGR1;;chr5:3595934..3595957,+!p2@IRX1!0.63!3.24!IRX1;;chr6:10419824..10419840,-!p9@TFAP2A!0.63!3.24!TFAP2A;;chr8:128747729..128747748,+!p14@MYC!0.63!3.24!MYC;;chr4:57522674..57522699,-!p5@HOPX!0.63!3.24!HOPX;;chr9:22447422..22447483,+!p1@DMRTA1!0.63!3.24!DMRTA1;;chr20:22565185..22565223,-!p3@FOXA2!0.63!3.24!FOXA2;;chr19:20188776..20188826,+!p1@ZNF90!0.62!9.72!ZNF90;;chr13:73636252..73636307,+!p2@KLF5!0.62!3.80!KLF5;;chr6:106546786..106546802,+!p6@PRDM1!0.62!3.15!PRDM1;;chr15:83953782..83953786,-!p5@BNC1!0.62!3.15!BNC1;;chr17:41622925..41622976,-!p3@ETV4!0.61!5.00!ETV4;;chr20:22564895..22564910,-!p1@FOXA2!0.61!3.06!FOXA2;;chr14:69259772..69259790,-!p1@ZFP36L1!0.59!365.17!ZFP36L1;;chr20:45142154..45142227,-!p1@ZNF334!0.59!6.48!ZNF334;;chr16:79634595..79634620,-!p2@MAF!0.59!5.83!MAF;;chr5:178368186..178368238,+!p1@ZNF454!0.59!5.74!ZNF454;;chr8:28243813..28243839,-!p4@ZNF395!0.59!5.74!ZNF395;;chr8:102504979..102505010,+!p2@GRHL2!0.59!2.87!GRHL2;;chr1:209979375..209979386,-!p4@IRF6!0.59!2.87!IRF6;;chr15:83953694..83953708,-!p4@BNC1!0.59!2.87!BNC1;;chr11:128392273..128392308,-!p2@ETS1!0.58!14.35!ETS1;;chr6:1312325..1312340,+!p1@FOXQ1!0.58!5.00!FOXQ1;;chr9:96717678..96717689,-!p2@BARX1!0.58!2.78!BARX1;;chr8:28243934..28243993,-!p3@ZNF395!0.57!8.70!ZNF395;;chr17:38465441..38465481,+!p6@RARA!0.57!3.52!RARA;;chr17:48072574..48072597,-!p1@DLX3!0.57!2.69!DLX3;;chr14:29236269..29236285,+!p3@FOXG1!0.57!2.69!FOXG1;;chr8:103667935..103667960,-!p1@KLF10!0.56!148.14!KLF10;;chr19:58341656..58341694,+!p5@ZNF587!0.56!3.33!ZNF587;;chr14:90085820..90085840,-!p6@FOXN3!0.56!2.59!FOXN3;;chr4:111544254..111544270,-!p3@PITX2!0.56!2.59!PITX2;;chr8:10588174..10588200,-!p3@SOX7!0.56!2.59!SOX7;;chr5:137801160..137801176,+!p1@EGR1!0.54!317.49!EGR1;;chr12:96588219..96588263,+!p2@ELK3!0.54!22.31!ELK3;;chr19:53758058..53758088,-!p2@ZNF677!0.54!9.81!ZNF677;;chr12:53625966..53626012,-!p2@RARG!0.54!7.68!RARG;;chr3:32023232..32023273,+!p1@ZNF860!0.54!3.80!ZNF860;;chr18:53089493..53089517,-!p15@TCF4!0.54!2.50!TCF4;;chr8:102504690..102504704,+!p3@GRHL2!0.54!2.50!GRHL2;;chr19:20278012..20278034,+!p1@ZNF486!0.53!25.28!ZNF486;;chr4:206390..206444,+!p1@ZNF876P!0.53!4.81!ZNF876P;;chr2:166326200..166326216,+!p1@CSRNP3!0.53!3.89!CSRNP3;;chr1:37945588..37945604,+!p3@ZC3H12A!0.53!2.41!ZC3H12A;;chr5:3595961..3595975,+!p3@IRX1!0.53!2.41!IRX1;;chr6:34524025..34524045,-!p3@SPDEF!0.53!2.41!SPDEF;;chr8:128747757..128747800,+!p7@MYC!0.52!3.43!MYC;;chr8:128748470..128748487,+!p1@MYC!0.51!324.80!MYC;;chr2:43453734..43453751,-!p1@ZFP36L2!0.51!316.00!ZFP36L2;;chr11:65667846..65667868,-!p1@FOSL1!0.51!78.24!FOSL1;;chr18:3449720..3449749,+!p2@TGIF1!0.51!5.65!TGIF1;;chr20:50721803..50721857,-!p2@ZFP64!0.51!3.98!ZFP64;;chrX:56258811..56258838,+!p2@KLF8!0.51!3.24!KLF8;;chr12:66218904..66218913,+!p11@HMGA2!0.51!2.22!HMGA2;;chr21:38071403..38071428,+!p2@SIM2!0.51!2.22!SIM2;;chr4:111558135..111558198,-!p2@PITX2!0.51!2.22!PITX2;;chr10:70320074..70320106,+!p1@TET1!0.50!5.18!TET1;;chr2:10091815..10091864,+!p1@GRHL1!0.50!3.15!GRHL1;;chr6:106546834..106546850,+!p4@PRDM1!0.50!2.13!PRDM1;;chr12:66218413..66218418,+!p17@HMGA2!0.50!2.13!HMGA2;;chr1:10856694..10856715,-!p3@CASZ1!0.50!2.13!CASZ1;;chr1:154975229..154975247,+!p6@ZBTB7B!0.50!2.13!ZBTB7B;;chr19:9731872..9731915,-!p1@ZNF561!0.49!36.48!ZNF561;;chr1:151032782..151032801,+!p4@MLLT11!0.49!4.91!MLLT11;;chr17:41622765..41622821,-!p2@ETV4!0.49!3.61!ETV4;;chr8:28243661..28243709,-!p1@ZNF395!0.48!15.37!ZNF395;;chr21:40177892..40177903,+!p2@ETS2!0.48!10.37!ETS2;;chr19:22817119..22817145,+!p1@ZNF492!0.48!3.89!ZNF492;;chr15:101069186..101069200,-!p4@CERS3!0.48!2.04!CERS3;;chr17:7492504..7492520,-!p3@SOX15!0.48!2.04!SOX15;;chr18:3447536..3447542,+!p23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+|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000066;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000221;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000223;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0000312;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002076;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/CL:0002251;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000165;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000344;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0001007;;http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0003729
 |ffid_belonging_in_development=CL:0000357,CL:0000223,CL:0000114,CL:0000221
 |fonse_cell_line=
@@ Line 38: / Line 44: @@
 |fonse_treatment_closure=
 |has_quality=
+|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Keratinocyte%2520-%2520oral%252c%2520donor1.CNhs10879.11251-116E9.hg19.nobarcode.bam
+|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Keratinocyte%2520-%2520oral%252c%2520donor1.CNhs10879.11251-116E9.hg19.ctss.bed.gz
+|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.primary_cell.hCAGE/Keratinocyte%2520-%2520oral%252c%2520donor1.CNhs10879.11251-116E9.hg19.nobarcode.rdna.fa.gz
+|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Keratinocyte%2520-%2520oral%252c%2520donor1.CNhs10879.11251-116E9.hg38.nobarcode.bam
+|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.primary_cell.hCAGE/Keratinocyte%2520-%2520oral%252c%2520donor1.CNhs10879.11251-116E9.hg38.nobarcode.ctss.bed.gz
 |id=FF:11251-116E9
 |is_a=EFO:0002091;;FF:0000083
 |is_obsolete=
+|library_id=CNhs10879
+|library_id_phase_based=2:CNhs10879
+|microRNAs=
+|microRNAs_nn=
+|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;11251
+|microRNAs_nonnovel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer/#/human#srna;sample;SRhi10004.GCCAAT.11251
+|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;11251
+|microRNAs_novel_srna=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2016/vis_viewer_novel/#/human#srna;sample;SRhi10004.GCCAAT.11251
 |name=Keratinocyte - oral, donor1
 |namespace=FANTOM5
@@ Line 46: / Line 65: @@
 |profile_cagescan=,,,
 |profile_hcage=CNhs10879,LSID703,release008,COMPLETED
-|profile_rnaseq=,,,
+|profile_rnaseq=
 |profile_srnaseq=SRhi10004,,,
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 |rna_box=116
@@ Line 59: / Line 80: @@
 |rna_rin=
 |rna_sample_type=total RNA
-|rna_tube_id=116E9
+|rna_tube_id=1.16E+11
 |rna_weight_ug=10
+|rnaseq_library_id=SRhi10004.GCCAAT
 |sample_age=
+|sample_category=primary cells
 |sample_cell_catalog=N/A
 |sample_cell_line=
@@ Line 83: / Line 106: @@
 |top_motifs=TP53:2.69456184943;ZEB1:1.72384883866;SNAI1..3:1.70737853239;PDX1:1.5869321367;VSX1,2:1.48393428583;TBX4,5:1.43410414629;NKX2-3_NKX2-5:1.21932619636;FOXM1:1.21110601555;ADNP_IRX_SIX_ZHX:1.13283959608;RBPJ:1.07956380335;NKX2-2,8:0.997365186281;ONECUT1,2:0.944340415567;ARID5B:0.909742065383;XCPE1{core}:0.85427814023;MYOD1:0.830413071074;POU1F1:0.822783834441;TEAD1:0.795846956382;SP1:0.780732550079;HAND1,2:0.685988839396;FOXQ1:0.672033361332;NKX3-2:0.654446036074;ZNF148:0.613559236759;STAT5{A,B}:0.609518121153;CDC5L:0.604192716679;TEF:0.596885637299;KLF4:0.580857704392;PPARG:0.563338244127;ZNF238:0.549217326225;ZNF423:0.525603586922;NKX2-1,4:0.497858532209;NFIL3:0.482345250399;FOS_FOS{B,L1}_JUN{B,D}:0.468763270474;PAX4:0.463749243301;FOXO1,3,4:0.461538851242;GCM1,2:0.431011575608;CEBPA,B_DDIT3:0.415601085539;CRX:0.398222875694;MAZ:0.390272827243;SMAD1..7,9:0.365264711849;ZIC1..3:0.36488756495;BACH2:0.349199399577;GLI1..3:0.343328413562;PAX1,9:0.338300431973;CDX1,2,4:0.305965890829;LMO2:0.301372212789;SOX17:0.290982529337;TBP:0.278115355674;UFEwm:0.268116430293;GTF2A1,2:0.263834052262;NANOG:0.261568852544;E2F1..5:0.244349497878;POU2F1..3:0.237723897538;MTF1:0.234255410747;SOX2:0.227793546701;HOX{A4,D4}:0.209320422983;bHLH_family:0.203776737857;FOSL2:0.198513224903;PAX6:0.194763138776;POU6F1:0.167267606205;ZNF143:0.138268343163;EBF1:0.135597185789;NKX6-1,2:0.13326924591;PAX5:0.104824137382;GFI1B:0.104127152996;T:0.101093071375;TFCP2:0.0950406166602;RREB1:0.0930723735669;NRF1:0.092904450405;TLX1..3_NFIC{dimer}:0.0769008773757;IRF7:0.0491358399689;NR6A1:0.0451165661037;ZNF384:0.036659635442;YY1:0.0246045751023;TFAP2{A,C}:0.0220371276209;FOXD3:0.0204118626557;HSF1,2:0.0186452947088;ELK1,4_GABP{A,B1}:0.0137188816974;TFDP1:0.0136048227947;RXR{A,B,G}:0.0074526559462;NR5A1,2:0.00586159951042;HMGA1,2:0.00264100365495;GFI1:-0.00110965107748;HLF:-0.0180678110516;TOPORS:-0.0241233106579;LHX3,4:-0.0276404062273;HNF4A_NR2F1,2:-0.0280494063183;NFY{A,B,C}:-0.0305060575448;GZF1:-0.0322238578756;FOX{I1,J2}:-0.0418549412794;EN1,2:-0.0468969619059;NR3C1:-0.0641519561068;REST:-0.0691313393253;MED-1{core}:-0.0722219170829;PAX8:-0.0734340624386;FOXN1:-0.0753658725926;NFIX:-0.0811633817264;MYB:-0.086800043358;AR:-0.0872869174696;IKZF1:-0.0889940517887;NKX3-1:-0.0983536244721;GTF2I:-0.099427146394;POU5F1:-0.109215772552;NFE2:-0.110460797853;HOX{A5,B5}:-0.136514523919;HNF1A:-0.138799519661;HMX1:-0.143417145714;STAT1,3:-0.153431412846;GATA4:-0.156461984721;HOXA9_MEIS1:-0.157173781892;ELF1,2,4:-0.16028702493;NFKB1_REL_RELA:-0.170702461901;OCT4_SOX2{dimer}:-0.177797314506;POU3F1..4:-0.181679788829;FOXL1:-0.191626321097;ZBTB6:-0.200589653137;ZFP161:-0.20468954294;LEF1_TCF7_TCF7L1,2:-0.218818152326;AIRE:-0.226252689306;MYBL2:-0.25075916011;EP300:-0.253944036284;RFX2..5_RFXANK_RFXAP:-0.2615076815;ALX1:-0.265530336427;AHR_ARNT_ARNT2:-0.265766258053;EGR1..3:-0.267506831768;MTE{core}:-0.296796036082;TFAP4:-0.303979002659;EVI1:-0.317633638817;PAX2:-0.318663118643;NHLH1,2:-0.323203736427;MYFfamily:-0.330377763676;NR1H4:-0.344315634993;FOXP3:-0.360843260114;ATF2:-0.374871747091;ETS1,2:-0.379208979229;SOX{8,9,10}:-0.385440552449;IKZF2:-0.388983041358;RFX1:-0.392740920239;SRF:-0.396301522617;MZF1:-0.406471145397;SPIB:-0.417557607999;HIF1A:-0.423115346653;HIC1:-0.425187573366;PBX1:-0.43388992128;SPI1:-0.447408829928;SPZ1:-0.448565270116;GATA6:-0.455559107084;RUNX1..3:-0.458236001028;CUX2:-0.461231582617;ALX4:-0.464946950098;BPTF:-0.466020726078;CREB1:-0.470637862526;FOX{F1,F2,J1}:-0.478926280102;FOX{D1,D2}:-0.497769723102;PITX1..3:-0.500481970794;SOX5:-0.527892235221;ESR1:-0.539803252168;PATZ1:-0.543938758191;JUN:-0.549813333762;PRDM1:-0.552376647687;IRF1,2:-0.556346752513;RXR{A,B,G}_{NR1H2,PPAR}dimers:-0.558113402302;HES1:-0.558158598201;NFE2L2:-0.565581455711;ATF5_CREB3:-0.571526596412;FOXP1:-0.573693855688;ZBTB16:-0.575535627304;ATF4:-0.583598695152;HBP1_HMGB_SSRP1_UBTF:-0.625366118987;NFATC1..3:-0.641324121541;HOX{A6,A7,B6,B7}:-0.648037724033;MEF2{A,B,C,D}:-0.654703739089;TLX2:-0.686099157081;RORA:-0.733388776201;FOXA2:-0.746882520089;STAT2,4,6:-0.756747424594;TFAP2B:-0.759434115124;DBP:-0.794416681646;PRRX1,2:-0.818034304473;TGIF1:-0.82398344642;ESRRA:-0.86890653817;BREu{core}:-0.89035524528;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.926247071292;NANOG{mouse}:-0.927340136508;MAFB:-1.0113652261;TAL1_TCF{3,4,12}:-1.01741415649;DMAP1_NCOR{1,2}_SMARC:-1.08248671461;PAX3,7:-1.12848069655;RXRA_VDR{dimer}:-1.1939288208;NFE2L1:-1.23520467857;SREBF1,2:-1.30088665277;XBP1:-1.3535159768;ATF6:-1.57970262549
 |xref=
+|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:11251-116E9;search_select_hide=table117:FF:11251-116E9
 }}

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FF:11251-116E9: Difference between revisions

From FANTOM5_SSTAR

Latest revision as of 16:28, 3 June 2020

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	Mozilla Cavendish skin modified by DaSch for the Web Community Wiki GitHub project page – Report a bug – Skin version: 2.6.0