FF:10752-110D5: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00004745 | |||
|DRA_sample_Accession_RNASeq=RNA-Seq@SAMD00004745 | |||
|accession_numbers=CAGE;DRX007919;DRR008791;DRZ000216;DRZ001601;DRZ011566;DRZ012951 | |||
|accession_numbers_RNASeq=RNA-Seq;DRX057138;DRR062897;DRZ007973 | |||
|ancestors_in_anatomy_facet= | |ancestors_in_anatomy_facet= | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000988,CL:0000548,CL:0000763,CL:0002371,CL:0000255 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr12:54694758..54694805,-!p1@NFE2!2.21!193.25!NFE2;;chr3:128212033..128212051,-!p1@GATA2!2.17!146.12!GATA2;;chrX:48644984..48645005,+!p1@GATA1!2.10!123.88!GATA1;;chr12:54694807..54694832,-!p3@NFE2!1.97!91.45!NFE2;;chr6:135502501..135502546,+!p1@MYB!1.92!96.87!MYB;;chr19:13213511..13213545,-!p2@LYL1!1.81!68.88!LYL1;;chr9:135854091..135854159,+!p1@GFI1B!1.80!62.80!GFI1B;;chr5:134369905..134369972,-!p1@PITX1!1.72!78.40!PITX1;;chr1:47695003..47695042,-!p2@TAL1!1.72!50.98!TAL1;;chr19:12998003..12998021,-!p1@KLF1!1.71!50.82!KLF1;;chrY:21906594..21906622,-!p1@KDM5D!1.57!36.20!KDM5D;;chr21:39870339..39870443,-!p1@ERG!1.54!33.99!ERG;;chr6:135502408..135502459,+!p2@MYB!1.51!36.12!MYB;;chr9:20382446..20382493,-!p4@MLLT3!1.49!30.13!MLLT3;;chr11:47400078..47400106,-!p1@SPI1!1.45!27.17!SPI1;;chr3:128206762..128206781,-!p2@GATA2!1.41!149.00!GATA2;;chr5:134369879..134369898,-!p2@PITX1!1.39!23.31!PITX1;;chr1:47903709..47903764,+!p1@BC169308!1.36!25.04!FOXD2;;chr17:46622229..46622257,-!p6@HOXB2!1.31!22.90!HOXB2;;chr15:96869511..96869525,+!p16@NR2F2!1.30!21.18!NR2F2;;chr10:94449703..94449718,+!p1@HHEX!1.29!70.19!HHEX;;chr1:47697881..47697910,-!p4@TAL1!1.23!16.17!TAL1;;chr19:13213555..13213568,-!p5@LYL1!1.23!15.93!LYL1;;chr6:135502472..135502489,+!p3@MYB!1.22!15.52!MYB;;chr2:239148671..239148686,-!p1@HES6!1.19!52.46!HES6;;chr11:47400045..47400060,-!p6@SPI1!1.19!14.53!SPI1;;chr2:187350973..187351072,+!p1@ZC3H15!1.17!1179.67!ZC3H15;;chr12:54694653..54694672,-!p2@NFE2!1.17!13.79!NFE2;;chr7:27205106..27205134,-!p2@HOXA9!1.17!13.79!HOXA9;;chr12:54689532..54689551,-!p4@NFE2!1.16!13.55!NFE2;;chr5:88178983..88179012,-!p1@MEF2C!1.15!99.99!MEF2C;;chr18:22932080..22932170,-!p1@ZNF521!1.13!53.28!ZNF521;;chr11:120107344..120107351,+!p1@POU2F3!1.13!15.27!POU2F3;;chr11:47399996..47400014,-!p4@SPI1!1.13!12.56!SPI1;;chr6:15401104..15401166,+!p5@JARID2!1.11!11.82!JARID2;;chr17:46622205..46622218,-!p3@HOXB2!1.10!13.38!HOXB2;;chr11:47399947..47399961,-!p3@SPI1!1.09!11.41!SPI1;;chr11:47400032..47400043,-!p5@SPI1!1.09!11.33!SPI1;;chr8:128748308..128748324,+!p2@MYC!1.07!299.64!MYC;;chrY:2803415..2803468,+!p1@ZFY!1.07!10.84!ZFY;;chr15:76629123..76629151,+!p1@ISL2!1.06!11.74!ISL2;;chr8:28748099..28748141,+!p2@HMBOX1!1.04!31.61!HMBOX1;;chr17:40441354..40441410,+!p2@STAT5A!1.04!9.85!STAT5A;;chr21:36421535..36421610,-!p2@RUNX1!1.03!35.46!RUNX1;;chr10:94449675..94449694,+!p2@HHEX!1.03!26.19!HHEX;;chrX:48644976..48644983,+!p2@GATA1!1.03!9.69!GATA1;;chr2:157189180..157189290,-!p1@NR4A2!1.02!50.82!NR4A2;;chr15:96876966..96877017,+!p12@NR2F2!1.02!13.87!NR2F2;;chr2:187350951..187350962,+!p2@ZC3H15!1.01!22.16!ZC3H15;;chr7:115670804..115670825,-!p1@TFEC!1.01!9.19!TFEC;;chr11:65687362..65687436,+!p3@DRAP1!1.00!41.79!DRAP1;;chr19:52074502..52074587,+!p1@ZNF175!0.98!31.85!ZNF175;;chr3:24536253..24536328,-!p1@THRB!0.97!16.17!THRB;;chr12:54694738..54694749,-!p5@NFE2!0.97!8.29!NFE2;;chr15:60296442..60296464,+!p1@FOXB1!0.97!8.29!FOXB1;;chr6:20402102..20402152,+!p1@E2F3!0.96!34.48!E2F3;;chr11:32457075..32457095,-!p1@WT1!0.94!7.80!WT1;;chr17:46622440..46622477,-!p5@HOXB2!0.92!8.29!HOXB2;;chr7:27205136..27205164,-!p1@HOXA9!0.92!7.39!HOXA9;;chr7:35293685..35293718,-!p1@TBX20!0.92!7.39!TBX20;;chrX:48645010..48645015,+!p3@GATA1!0.92!7.22!GATA1;;chr9:135854074..135854089,+!p2@GFI1B!0.92!7.22!GFI1B;;chr1:47691303..47691319,-!p5@TAL1!0.92!7.22!TAL1;;chr6:126240380..126240430,+!p2@NCOA7!0.91!19.21!NCOA7;;chr19:12203100..12203132,+!p1@ZNF788!0.91!14.78!ZNF788;;chr19:22235279..22235301,+!p1@ZNF257!0.91!13.79!ZNF257;;chr17:46703687..46703740,-!p1@HOXB9!0.90!6.98!HOXB9;;chr1:47903765..47903783,+!p3@BC169308!0.90!6.90!FOXD2;;chr2:145277640..145277771,-!p1@ZEB2!0.89!95.06!ZEB2;;chr15:96874012..96874042,+!p2@NR2F2!0.89!63.38!NR2F2;;chr12:54785074..54785122,-!p2@ZNF385A!0.89!10.59!ZNF385A;;chr5:88179195..88179224,-!p3@MEF2C!0.88!10.84!MEF2C;;chr17:42295777..42295816,-!p7@UBTF!0.88!8.13!UBTF;;chr17:7492684..7492778,-!p2@SOX15!0.87!14.12!SOX15;;chr1:47697539..47697573,-!p3@TAL1!0.87!6.49!TAL1;;chr17:40440481..40440550,+!p1@STAT5A!0.86!47.78!STAT5A;;chr4:4291837..4291859,-!p2@LYAR!0.86!21.67!LYAR;;chr1:61548069..61548102,+!p3@NFIA!0.86!15.76!NFIA;;chr11:615570..615721,-!p2@IRF7!0.86!12.72!IRF7;;chr17:46655704..46655718,-!p2@HOXB4!0.85!9.36!HOXB4;;chr6:134274354..134274371,+!p1@TBPL1!0.84!166.07!TBPL1;;chr16:29819446..29819471,+!p9@MAZ!0.84!18.64!MAZ;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!0.84!5.91!MEF2B;;chr19:45971246..45971265,+!p1@FOSB!0.83!115.18!FOSB;;chr8:10588010..10588030,-!p1@SOX7!0.82!5.66!SOX7;;chr17:38020392..38020477,-!p1@IKZF3!0.82!5.58!IKZF3;;chr21:36260980..36261011,-!p1@RUNX1!0.81!171.74!RUNX1;;chr5:88179017..88179046,-!p2@MEF2C!0.80!22.90!MEF2C;;chr19:54058073..54058088,+!p1@ZNF331!0.80!5.25!ZNF331;;chr1:92949331..92949377,-!p2@GFI1!0.80!5.25!GFI1;;chr19:13213465..13213478,-!p7@LYL1!0.80!5.25!LYL1;;chr19:54024251..54024305,+!p4@ZNF331!0.78!8.46!ZNF331;;chr8:102216978..102217003,-!p4@ZNF706!0.78!5.09!ZNF706;;chr17:46655578..46655589,-!p4@HOXB4!0.77!4.84!HOXB4;;chr19:20188776..20188826,+!p1@ZNF90!0.76!13.87!ZNF90;;chr8:124286495..124286548,-!p1@ZHX1!0.75!49.75!ZHX1;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.75!23.23!TAL1;;chr18:77155922..77155939,+!p1@NFATC1!0.75!13.79!NFATC1;;chr18:22932004..22932021,-!p2@ZNF521!0.75!4.68!ZNF521;;chr11:47400062..47400077,-!p2@SPI1!0.75!4.68!SPI1;;chr17:40440446..40440464,+!p5@STAT5A!0.75!4.60!STAT5A;;chr17:42295682..42295731,-!p17@UBTF!0.75!4.60!UBTF;;chr19:58545454..58545498,+!p1@ZSCAN1!0.75!4.60!ZSCAN1;;chr19:9695169..9695188,-!p1@ZNF121!0.74!89.23!ZNF121;;chrX:84499081..84499115,+!p2@ZNF711!0.74!6.98!ZNF711;;chr19:13213662..13213686,-!p1@LYL1!0.74!6.90!LYL1;;chr8:28748157..28748175,+!p3@HMBOX1!0.74!5.58!HMBOX1;;chr19:54024313..54024361,+!p7@ZNF331!0.74!4.52!ZNF331;;chr17:46655672..46655697,-!p3@HOXB4!0.74!4.52!HOXB4;;chrY:21906761..21906810,-!p2@KDM5D!0.74!4.52!KDM5D;;chr17:46622175..46622186,-!p12@HOXB2!0.74!4.43!HOXB2;;chr15:96873921..96873946,+!p1@NR2F2!0.73!138.82!NR2F2;;chr19:23433144..23433204,-!p1@ZNF724P!0.73!21.92!ZNF724P;;chr1:158985493..158985535,+!p4@IFI16!0.73!7.06!IFI16;;chr16:29819403..29819442,+!p5@MAZ!0.72!38.99!MAZ;;chr17:46621146..46621180,-!p10@HOXB2!0.72!4.27!HOXB2;;chr2:8822176..8822196,+!p1@ID2!0.71!662.49!ID2;;chr3:141747459..141747475,-!p1@TFDP2!0.71!38.67!TFDP2;;chr8:145159447..145159458,+!p4@MAF1!0.71!10.67!MAF1;;chr18:3448455..3448480,+!p5@TGIF1!0.71!8.21!TGIF1;;chr2:185463247..185463263,+!p1@ZNF804A!0.71!7.80!ZNF804A;;chr6:100061724..100061753,+!p1@PRDM13!0.71!4.19!PRDM13;;chr1:47695156..47695179,-!p10@TAL1!0.71!4.19!TAL1;;chr19:21950332..21950356,-!p2@ZNF100!0.70!9.19!ZNF100;;chr8:37963466..37963506,+!p3@ASH2L!0.70!5.25!ASH2L;;chr8:144373550..144373617,+!p1@ZNF696!0.69!15.68!ZNF696;;chr1:43148855..43148908,+!p4@YBX1!0.69!6.49!YBX1;;chr1:47696918..47696935,-!p6@TAL1!0.69!3.94!TAL1;;chr1:92951607..92951661,-!p1@GFI1!0.69!3.94!GFI1;;chr2:60780607..60780624,-!p2@BCL11A!0.68!12.81!BCL11A;;chr15:96875657..96875760,+!p14@NR2F2!0.68!6.73!NR2F2;;chr17:40440177..40440190,+!p6@STAT5A!0.68!3.78!STAT5A;;chr11:32457103..32457123,-!p3@WT1!0.68!3.78!WT1;;chr9:135854058..135854072,+!p3@GFI1B!0.68!3.78!GFI1B;;chr6:135513595..135513617,+!p4@MYB!0.67!3.69!MYB;;chr12:54778471..54778528,-!p1@ZNF385A!0.67!3.69!ZNF385A;;chr8:128748470..128748487,+!p1@MYC!0.66!464.64!MYC;;chr6:126102292..126102329,+!p3@NCOA7!0.66!13.38!NCOA7;;chr1:61547894..61547968,+!p2@NFIA!0.66!11.82!NFIA;;chr6:126102254..126102289,+!p5@NCOA7!0.66!11.16!NCOA7;;chr3:18486354..18486377,-!p2@SATB1!0.66!4.68!SATB1;;chr2:172949484..172949522,+!p1@DLX1!0.66!3.61!DLX1;;chr5:134369973..134369984,-!p3@PITX1!0.66!3.61!PITX1;;chr7:50348268..50348366,+!p4@IKZF1!0.66!3.61!IKZF1;;chr12:54689552..54689574,-!p6@NFE2!0.66!3.61!NFE2;;chr7:50344289..50344323,+!p1@IKZF1!0.66!3.53!IKZF1;;chr11:615942..615957,-!p1@IRF7!0.65!38.42!IRF7;;chr20:48599506..48599526,+!p1@SNAI1!0.65!26.11!SNAI1;;chr20:42295713..42295738,+!p2@MYBL2!0.65!23.56!MYBL2;;chrX:129244840..129244881,-!p2@ELF4!0.65!15.27!ELF4;;chr20:31350184..31350200,+!p1@DNMT3B!0.65!7.96!DNMT3B;;chr1:25256756..25256774,-!p1@RUNX3!0.65!7.06!RUNX3;;chr11:65688056..65688069,+!p21@DRAP1!0.65!3.45!DRAP1;;chr7:50343634..50343717,+!p2@IKZF1!0.65!3.45!IKZF1;;chr13:41593425..41593480,-!p1@ELF1!0.64!24.71!ELF1;;chr19:24097706..24097731,+!p2@ZNF726!0.64!7.14!ZNF726;;chr19:23299814..23299844,+!p1@ZNF730!0.64!4.27!ZNF730;;chr6:126240356..126240379,+!p7@NCOA7!0.64!4.27!NCOA7;;chr4:109089901..109089930,-!p3@LEF1!0.64!3.37!LEF1;;chr12:11802753..11802834,+!p2@ETV6!0.63!18.47!ETV6;;chr2:231084639..231084654,-!p2@SP110!0.63!5.91!SP110;;chr8:128747757..128747800,+!p7@MYC!0.63!4.68!MYC;;chr19:58740449..58740456,+!p3@ZNF544!0.63!3.28!ZNF544;;chr11:65667884..65667895,-!p2@FOSL1!0.62!14.45!FOSL1;;chr19:11959532..11959593,+!p1@ZNF439!0.62!14.04!ZNF439;;chr1:249132462..249132481,+!p6@ZNF672!0.62!5.75!ZNF672;;chr17:41623009..41623053,-!p4@ETV4!0.62!5.50!ETV4;;chr12:54785054..54785072,-!p4@ZNF385A!0.62!3.69!ZNF385A;;chr16:29819558..29819572,+!p28@MAZ!0.62!3.20!MAZ;;chr1:67395982..67396015,+!p4@MIER1!0.61!9.36!MIER1;;chr17:46655730..46655791,-!p1@HOXB4!0.61!8.70!HOXB4;;chr1:45805872..45805900,+!p2@TOE1!0.61!8.46!TOE1;;chr15:96874244..96874259,+!p5@NR2F2!0.61!8.37!NR2F2;;chr8:128747661..128747703,+!p6@MYC!0.61!4.35!MYC;;chr17:46675420..46675465,-!p3@HOXB6!0.61!3.69!HOXB6;;chr19:13213496..13213501,-!p10@LYL1!0.61!3.12!LYL1;;chr20:22564895..22564910,-!p1@FOXA2!0.61!3.12!FOXA2;;chr20:22565185..22565223,-!p3@FOXA2!0.61!3.12!FOXA2;;chr14:37131058..37131139,+!p1@PAX9!0.61!3.12!PAX9;;chr3:128207349..128207386,-!p3@GATA2!0.61!3.12!GATA2;;chr15:67391010..67391046,+!p13@SMAD3!0.61!3.04!SMAD3;;chr19:13213399..13213414,-!p6@LYL1!0.61!3.04!LYL1;;chr19:36706055..36706074,+!p3@ZNF146!0.60!16.34!ZNF146;;chr16:68119324..68119364,+!p1@NFATC3!0.60!15.93!NFATC3;;chr1:43148792..43148849,+!p2@YBX1!0.60!13.38!YBX1;;chr18:53254566..53254567,-!p8@TCF4!0.60!5.42!TCF4;;chr17:46622114..46622138,-!p4@HOXB2!0.60!4.93!HOXB2;;chr8:80679993..8068001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| |expression_enrichment_score=chr12:54694758..54694805,-!p1@NFE2!2.21!193.25!NFE2;;chr3:128212033..128212051,-!p1@GATA2!2.17!146.12!GATA2;;chrX:48644984..48645005,+!p1@GATA1!2.10!123.88!GATA1;;chr12:54694807..54694832,-!p3@NFE2!1.97!91.45!NFE2;;chr6:135502501..135502546,+!p1@MYB!1.92!96.87!MYB;;chr19:13213511..13213545,-!p2@LYL1!1.81!68.88!LYL1;;chr9:135854091..135854159,+!p1@GFI1B!1.80!62.80!GFI1B;;chr5:134369905..134369972,-!p1@PITX1!1.72!78.40!PITX1;;chr1:47695003..47695042,-!p2@TAL1!1.72!50.98!TAL1;;chr19:12998003..12998021,-!p1@KLF1!1.71!50.82!KLF1;;chrY:21906594..21906622,-!p1@KDM5D!1.57!36.20!KDM5D;;chr21:39870339..39870443,-!p1@ERG!1.54!33.99!ERG;;chr6:135502408..135502459,+!p2@MYB!1.51!36.12!MYB;;chr9:20382446..20382493,-!p4@MLLT3!1.49!30.13!MLLT3;;chr11:47400078..47400106,-!p1@SPI1!1.45!27.17!SPI1;;chr3:128206762..128206781,-!p2@GATA2!1.41!149.00!GATA2;;chr5:134369879..134369898,-!p2@PITX1!1.39!23.31!PITX1;;chr1:47903709..47903764,+!p1@BC169308!1.36!25.04!FOXD2;;chr17:46622229..46622257,-!p6@HOXB2!1.31!22.90!HOXB2;;chr15:96869511..96869525,+!p16@NR2F2!1.30!21.18!NR2F2;;chr10:94449703..94449718,+!p1@HHEX!1.29!70.19!HHEX;;chr1:47697881..47697910,-!p4@TAL1!1.23!16.17!TAL1;;chr19:13213555..13213568,-!p5@LYL1!1.23!15.93!LYL1;;chr6:135502472..135502489,+!p3@MYB!1.22!15.52!MYB;;chr2:239148671..239148686,-!p1@HES6!1.19!52.46!HES6;;chr11:47400045..47400060,-!p6@SPI1!1.19!14.53!SPI1;;chr2:187350973..187351072,+!p1@ZC3H15!1.17!1179.67!ZC3H15;;chr12:54694653..54694672,-!p2@NFE2!1.17!13.79!NFE2;;chr7:27205106..27205134,-!p2@HOXA9!1.17!13.79!HOXA9;;chr12:54689532..54689551,-!p4@NFE2!1.16!13.55!NFE2;;chr5:88178983..88179012,-!p1@MEF2C!1.15!99.99!MEF2C;;chr18:22932080..22932170,-!p1@ZNF521!1.13!53.28!ZNF521;;chr11:120107344..120107351,+!p1@POU2F3!1.13!15.27!POU2F3;;chr11:47399996..47400014,-!p4@SPI1!1.13!12.56!SPI1;;chr6:15401104..15401166,+!p5@JARID2!1.11!11.82!JARID2;;chr17:46622205..46622218,-!p3@HOXB2!1.10!13.38!HOXB2;;chr11:47399947..47399961,-!p3@SPI1!1.09!11.41!SPI1;;chr11:47400032..47400043,-!p5@SPI1!1.09!11.33!SPI1;;chr8:128748308..128748324,+!p2@MYC!1.07!299.64!MYC;;chrY:2803415..2803468,+!p1@ZFY!1.07!10.84!ZFY;;chr15:76629123..76629151,+!p1@ISL2!1.06!11.74!ISL2;;chr8:28748099..28748141,+!p2@HMBOX1!1.04!31.61!HMBOX1;;chr17:40441354..40441410,+!p2@STAT5A!1.04!9.85!STAT5A;;chr21:36421535..36421610,-!p2@RUNX1!1.03!35.46!RUNX1;;chr10:94449675..94449694,+!p2@HHEX!1.03!26.19!HHEX;;chrX:48644976..48644983,+!p2@GATA1!1.03!9.69!GATA1;;chr2:157189180..157189290,-!p1@NR4A2!1.02!50.82!NR4A2;;chr15:96876966..96877017,+!p12@NR2F2!1.02!13.87!NR2F2;;chr2:187350951..187350962,+!p2@ZC3H15!1.01!22.16!ZC3H15;;chr7:115670804..115670825,-!p1@TFEC!1.01!9.19!TFEC;;chr11:65687362..65687436,+!p3@DRAP1!1.00!41.79!DRAP1;;chr19:52074502..52074587,+!p1@ZNF175!0.98!31.85!ZNF175;;chr3:24536253..24536328,-!p1@THRB!0.97!16.17!THRB;;chr12:54694738..54694749,-!p5@NFE2!0.97!8.29!NFE2;;chr15:60296442..60296464,+!p1@FOXB1!0.97!8.29!FOXB1;;chr6:20402102..20402152,+!p1@E2F3!0.96!34.48!E2F3;;chr11:32457075..32457095,-!p1@WT1!0.94!7.80!WT1;;chr17:46622440..46622477,-!p5@HOXB2!0.92!8.29!HOXB2;;chr7:27205136..27205164,-!p1@HOXA9!0.92!7.39!HOXA9;;chr7:35293685..35293718,-!p1@TBX20!0.92!7.39!TBX20;;chrX:48645010..48645015,+!p3@GATA1!0.92!7.22!GATA1;;chr9:135854074..135854089,+!p2@GFI1B!0.92!7.22!GFI1B;;chr1:47691303..47691319,-!p5@TAL1!0.92!7.22!TAL1;;chr6:126240380..126240430,+!p2@NCOA7!0.91!19.21!NCOA7;;chr19:12203100..12203132,+!p1@ZNF788!0.91!14.78!ZNF788;;chr19:22235279..22235301,+!p1@ZNF257!0.91!13.79!ZNF257;;chr17:46703687..46703740,-!p1@HOXB9!0.90!6.98!HOXB9;;chr1:47903765..47903783,+!p3@BC169308!0.90!6.90!FOXD2;;chr2:145277640..145277771,-!p1@ZEB2!0.89!95.06!ZEB2;;chr15:96874012..96874042,+!p2@NR2F2!0.89!63.38!NR2F2;;chr12:54785074..54785122,-!p2@ZNF385A!0.89!10.59!ZNF385A;;chr5:88179195..88179224,-!p3@MEF2C!0.88!10.84!MEF2C;;chr17:42295777..42295816,-!p7@UBTF!0.88!8.13!UBTF;;chr17:7492684..7492778,-!p2@SOX15!0.87!14.12!SOX15;;chr1:47697539..47697573,-!p3@TAL1!0.87!6.49!TAL1;;chr17:40440481..40440550,+!p1@STAT5A!0.86!47.78!STAT5A;;chr4:4291837..4291859,-!p2@LYAR!0.86!21.67!LYAR;;chr1:61548069..61548102,+!p3@NFIA!0.86!15.76!NFIA;;chr11:615570..615721,-!p2@IRF7!0.86!12.72!IRF7;;chr17:46655704..46655718,-!p2@HOXB4!0.85!9.36!HOXB4;;chr6:134274354..134274371,+!p1@TBPL1!0.84!166.07!TBPL1;;chr16:29819446..29819471,+!p9@MAZ!0.84!18.64!MAZ;;chr19:19281060..19281078,-!p2@MEF2BNB-MEF2B,p2@MEF2B!0.84!5.91!MEF2B;;chr19:45971246..45971265,+!p1@FOSB!0.83!115.18!FOSB;;chr8:10588010..10588030,-!p1@SOX7!0.82!5.66!SOX7;;chr17:38020392..38020477,-!p1@IKZF3!0.82!5.58!IKZF3;;chr21:36260980..36261011,-!p1@RUNX1!0.81!171.74!RUNX1;;chr5:88179017..88179046,-!p2@MEF2C!0.80!22.90!MEF2C;;chr19:54058073..54058088,+!p1@ZNF331!0.80!5.25!ZNF331;;chr1:92949331..92949377,-!p2@GFI1!0.80!5.25!GFI1;;chr19:13213465..13213478,-!p7@LYL1!0.80!5.25!LYL1;;chr19:54024251..54024305,+!p4@ZNF331!0.78!8.46!ZNF331;;chr8:102216978..102217003,-!p4@ZNF706!0.78!5.09!ZNF706;;chr17:46655578..46655589,-!p4@HOXB4!0.77!4.84!HOXB4;;chr19:20188776..20188826,+!p1@ZNF90!0.76!13.87!ZNF90;;chr8:124286495..124286548,-!p1@ZHX1!0.75!49.75!ZHX1;;chr1:47779762..47779827,-!p1@STIL,p1@TAL1!0.75!23.23!TAL1;;chr18:77155922..77155939,+!p1@NFATC1!0.75!13.79!NFATC1;;chr18:22932004..22932021,-!p2@ZNF521!0.75!4.68!ZNF521;;chr11:47400062..47400077,-!p2@SPI1!0.75!4.68!SPI1;;chr17:40440446..40440464,+!p5@STAT5A!0.75!4.60!STAT5A;;chr17:42295682..42295731,-!p17@UBTF!0.75!4.60!UBTF;;chr19:58545454..58545498,+!p1@ZSCAN1!0.75!4.60!ZSCAN1;;chr19:9695169..9695188,-!p1@ZNF121!0.74!89.23!ZNF121;;chrX:84499081..84499115,+!p2@ZNF711!0.74!6.98!ZNF711;;chr19:13213662..13213686,-!p1@LYL1!0.74!6.90!LYL1;;chr8:28748157..28748175,+!p3@HMBOX1!0.74!5.58!HMBOX1;;chr19:54024313..54024361,+!p7@ZNF331!0.74!4.52!ZNF331;;chr17:46655672..46655697,-!p3@HOXB4!0.74!4.52!HOXB4;;chrY:21906761..21906810,-!p2@KDM5D!0.74!4.52!KDM5D;;chr17:46622175..46622186,-!p12@HOXB2!0.74!4.43!HOXB2;;chr15:96873921..96873946,+!p1@NR2F2!0.73!138.82!NR2F2;;chr19:23433144..23433204,-!p1@ZNF724P!0.73!21.92!ZNF724P;;chr1:158985493..158985535,+!p4@IFI16!0.73!7.06!IFI16;;chr16:29819403..29819442,+!p5@MAZ!0.72!38.99!MAZ;;chr17:46621146..46621180,-!p10@HOXB2!0.72!4.27!HOXB2;;chr2:8822176..8822196,+!p1@ID2!0.71!662.49!ID2;;chr3:141747459..141747475,-!p1@TFDP2!0.71!38.67!TFDP2;;chr8:145159447..145159458,+!p4@MAF1!0.71!10.67!MAF1;;chr18:3448455..3448480,+!p5@TGIF1!0.71!8.21!TGIF1;;chr2:185463247..185463263,+!p1@ZNF804A!0.71!7.80!ZNF804A;;chr6:100061724..100061753,+!p1@PRDM13!0.71!4.19!PRDM13;;chr1:47695156..47695179,-!p10@TAL1!0.71!4.19!TAL1;;chr19:21950332..21950356,-!p2@ZNF100!0.70!9.19!ZNF100;;chr8:37963466..37963506,+!p3@ASH2L!0.70!5.25!ASH2L;;chr8:144373550..144373617,+!p1@ZNF696!0.69!15.68!ZNF696;;chr1:43148855..43148908,+!p4@YBX1!0.69!6.49!YBX1;;chr1:47696918..47696935,-!p6@TAL1!0.69!3.94!TAL1;;chr1:92951607..92951661,-!p1@GFI1!0.69!3.94!GFI1;;chr2:60780607..60780624,-!p2@BCL11A!0.68!12.81!BCL11A;;chr15:96875657..96875760,+!p14@NR2F2!0.68!6.73!NR2F2;;chr17:40440177..40440190,+!p6@STAT5A!0.68!3.78!STAT5A;;chr11:32457103..32457123,-!p3@WT1!0.68!3.78!WT1;;chr9:135854058..135854072,+!p3@GFI1B!0.68!3.78!GFI1B;;chr6:135513595..135513617,+!p4@MYB!0.67!3.69!MYB;;chr12:54778471..54778528,-!p1@ZNF385A!0.67!3.69!ZNF385A;;chr8:128748470..128748487,+!p1@MYC!0.66!464.64!MYC;;chr6:126102292..126102329,+!p3@NCOA7!0.66!13.38!NCOA7;;chr1:61547894..61547968,+!p2@NFIA!0.66!11.82!NFIA;;chr6:126102254..126102289,+!p5@NCOA7!0.66!11.16!NCOA7;;chr3:18486354..18486377,-!p2@SATB1!0.66!4.68!SATB1;;chr2:172949484..172949522,+!p1@DLX1!0.66!3.61!DLX1;;chr5:134369973..134369984,-!p3@PITX1!0.66!3.61!PITX1;;chr7:50348268..50348366,+!p4@IKZF1!0.66!3.61!IKZF1;;chr12:54689552..54689574,-!p6@NFE2!0.66!3.61!NFE2;;chr7:50344289..50344323,+!p1@IKZF1!0.66!3.53!IKZF1;;chr11:615942..615957,-!p1@IRF7!0.65!38.42!IRF7;;chr20:48599506..48599526,+!p1@SNAI1!0.65!26.11!SNAI1;;chr20:42295713..42295738,+!p2@MYBL2!0.65!23.56!MYBL2;;chrX:129244840..129244881,-!p2@ELF4!0.65!15.27!ELF4;;chr20:31350184..31350200,+!p1@DNMT3B!0.65!7.96!DNMT3B;;chr1:25256756..25256774,-!p1@RUNX3!0.65!7.06!RUNX3;;chr11:65688056..65688069,+!p21@DRAP1!0.65!3.45!DRAP1;;chr7:50343634..50343717,+!p2@IKZF1!0.65!3.45!IKZF1;;chr13:41593425..41593480,-!p1@ELF1!0.64!24.71!ELF1;;chr19:24097706..24097731,+!p2@ZNF726!0.64!7.14!ZNF726;;chr19:23299814..23299844,+!p1@ZNF730!0.64!4.27!ZNF730;;chr6:126240356..126240379,+!p7@NCOA7!0.64!4.27!NCOA7;;chr4:109089901..109089930,-!p3@LEF1!0.64!3.37!LEF1;;chr12:11802753..11802834,+!p2@ETV6!0.63!18.47!ETV6;;chr2:231084639..231084654,-!p2@SP110!0.63!5.91!SP110;;chr8:128747757..128747800,+!p7@MYC!0.63!4.68!MYC;;chr19:58740449..58740456,+!p3@ZNF544!0.63!3.28!ZNF544;;chr11:65667884..65667895,-!p2@FOSL1!0.62!14.45!FOSL1;;chr19:11959532..11959593,+!p1@ZNF439!0.62!14.04!ZNF439;;chr1:249132462..249132481,+!p6@ZNF672!0.62!5.75!ZNF672;;chr17:41623009..41623053,-!p4@ETV4!0.62!5.50!ETV4;;chr12:54785054..54785072,-!p4@ZNF385A!0.62!3.69!ZNF385A;;chr16:29819558..29819572,+!p28@MAZ!0.62!3.20!MAZ;;chr1:67395982..67396015,+!p4@MIER1!0.61!9.36!MIER1;;chr17:46655730..46655791,-!p1@HOXB4!0.61!8.70!HOXB4;;chr1:45805872..45805900,+!p2@TOE1!0.61!8.46!TOE1;;chr15:96874244..96874259,+!p5@NR2F2!0.61!8.37!NR2F2;;chr8:128747661..128747703,+!p6@MYC!0.61!4.35!MYC;;chr17:46675420..46675465,-!p3@HOXB6!0.61!3.69!HOXB6;;chr19:13213496..13213501,-!p10@LYL1!0.61!3.12!LYL1;;chr20:22564895..22564910,-!p1@FOXA2!0.61!3.12!FOXA2;;chr20:22565185..22565223,-!p3@FOXA2!0.61!3.12!FOXA2;;chr14:37131058..37131139,+!p1@PAX9!0.61!3.12!PAX9;;chr3:128207349..128207386,-!p3@GATA2!0.61!3.12!GATA2;;chr15:67391010..67391046,+!p13@SMAD3!0.61!3.04!SMAD3;;chr19:13213399..13213414,-!p6@LYL1!0.61!3.04!LYL1;;chr19:36706055..36706074,+!p3@ZNF146!0.60!16.34!ZNF146;;chr16:68119324..68119364,+!p1@NFATC3!0.60!15.93!NFATC3;;chr1:43148792..43148849,+!p2@YBX1!0.60!13.38!YBX1;;chr18:53254566..53254567,-!p8@TCF4!0.60!5.42!TCF4;;chr17:46622114..46622138,-!p4@HOXB2!0.60!4.93!HOXB2;;chr8:80679993..8068001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| ||
Line 38: | Line 43: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/leukemia%252c%2520chronic%2520megakaryoblastic%2520cell%2520line%253aMEG-01.CNhs11859.10752-110D5.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/leukemia%252c%2520chronic%2520megakaryoblastic%2520cell%2520line%253aMEG-01.CNhs11859.10752-110D5.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/leukemia%252c%2520chronic%2520megakaryoblastic%2520cell%2520line%253aMEG-01.CNhs11859.10752-110D5.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/leukemia%252c%2520chronic%2520megakaryoblastic%2520cell%2520line%253aMEG-01.CNhs11859.10752-110D5.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/leukemia%252c%2520chronic%2520megakaryoblastic%2520cell%2520line%253aMEG-01.CNhs11859.10752-110D5.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10752-110D5 | |id=FF:10752-110D5 | ||
|is_a=EFO:0002091;;FF:0000210;;FF:0102581 | |is_a=EFO:0002091;;FF:0000210;;FF:0102581 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11859 | |||
|library_id_phase_based=2:CNhs11859 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10752 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10752 | |||
|name=leukemia, chronic megakaryoblastic cell line:MEG-01 | |name=leukemia, chronic megakaryoblastic cell line:MEG-01 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 46: | Line 62: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11859,LSID830,release010,COMPLETED | |profile_hcage=CNhs11859,LSID830,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| ||
|rna_box=110 | |rna_box=110 | ||
Line 61: | Line 79: | ||
|rna_tube_id=110D5 | |rna_tube_id=110D5 | ||
|rna_weight_ug=68.8554 | |rna_weight_ug=68.8554 | ||
|rnaseq_library_id=RDhi10081 | |||
|sample_age=56 | |sample_age=56 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=ifo50151 | |sample_cell_catalog=ifo50151 | ||
|sample_cell_line=MEG-01 | |sample_cell_line=MEG-01 | ||
Line 83: | Line 103: | ||
|top_motifs=GATA6:3.16373147958;POU2F1..3:2.22450166773;STAT5{A,B}:1.53540906131;MYB:1.49652843162;ALX1:1.46795285066;ZBTB16:1.43762813829;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.23527185324;bHLH_family:1.1652923212;AIRE:1.1540467445;EN1,2:1.12801792061;ELK1,4_GABP{A,B1}:1.11172811261;IKZF2:1.07101454692;NFY{A,B,C}:1.06167477292;PITX1..3:1.05256686545;PBX1:1.04247268087;NKX2-1,4:0.974925971391;TOPORS:0.87297266865;MYOD1:0.854480298608;ZNF143:0.85098475077;YY1:0.829326853744;POU1F1:0.815103741133;BREu{core}:0.798551580011;ELF1,2,4:0.782219895416;E2F1..5:0.743286382764;PAX8:0.679503769779;NRF1:0.647168497272;CUX2:0.639519420791;NKX3-1:0.636889106001;RBPJ:0.624599660592;CRX:0.603578695988;ATF4:0.549072369211;POU3F1..4:0.528158566802;ZNF148:0.513250373876;FOXP1:0.507576063934;HIF1A:0.506245537393;OCT4_SOX2{dimer}:0.505230846526;FOXQ1:0.49506981871;ATF5_CREB3:0.488524381037;FOX{I1,J2}:0.479035505795;STAT1,3:0.43976895329;CDX1,2,4:0.402828315466;FOXN1:0.383988152008;SPIB:0.377721989289;NKX6-1,2:0.342447753047;TFDP1:0.304732186766;HOXA9_MEIS1:0.296226478131;EVI1:0.270951472043;POU6F1:0.247556028791;NR5A1,2:0.243796453367;STAT2,4,6:0.238233590246;NR6A1:0.232518641537;IRF7:0.231158103891;SPI1:0.220929588412;ETS1,2:0.219904106833;TLX2:0.211156608374;CREB1:0.174871876105;NFE2:0.145434640536;HOX{A6,A7,B6,B7}:0.133897923027;DMAP1_NCOR{1,2}_SMARC:0.0992898272534;PAX4:0.0942213268676;SOX{8,9,10}:0.0888496992637;RUNX1..3:0.0857653900827;IRF1,2:0.0766642723078;PRRX1,2:0.0611192969918;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.000252489716184;SOX17:-0.00261315036452;ZNF384:-0.00462431040719;SRF:-0.00565600676448;PAX3,7:-0.0198136561867;AR:-0.0230369462568;NFIX:-0.0322733985702;LHX3,4:-0.0413208386908;CEBPA,B_DDIT3:-0.0714290476044;HES1:-0.0768695711394;PAX6:-0.0784287492252;NANOG{mouse}:-0.0854753490724;ARID5B:-0.0974725403214;HOX{A4,D4}:-0.103607473509;ADNP_IRX_SIX_ZHX:-0.11138369971;HNF4A_NR2F1,2:-0.112757861762;AHR_ARNT_ARNT2:-0.144159401941;ZFP161:-0.144584027155;FOXD3:-0.146557779173;ATF2:-0.150875461016;NKX2-3_NKX2-5:-0.168256412451;HOX{A5,B5}:-0.188734107341;HSF1,2:-0.190277582138;EP300:-0.200322589775;POU5F1:-0.228699783851;PDX1:-0.270255917947;GFI1:-0.272150903005;NHLH1,2:-0.27315880593;BACH2:-0.2737830145;TEF:-0.28334508169;FOXM1:-0.285844756775;FOSL2:-0.297588323784;FOX{F1,F2,J1}:-0.303059728041;SNAI1..3:-0.311274546038;HIC1:-0.323482360945;RREB1:-0.336387696152;NFKB1_REL_RELA:-0.341813622346;NFIL3:-0.373641089372;NANOG:-0.393170278473;ZNF238:-0.394621081492;RORA:-0.398008418564;FOXP3:-0.406497247982;ONECUT1,2:-0.406579249862;T:-0.425228025518;GATA4:-0.427882844738;PAX2:-0.429927721036;HLF:-0.449591066459;TBP:-0.461940638455;LEF1_TCF7_TCF7L1,2:-0.474099674523;NFE2L2:-0.476827912816;FOS_FOS{B,L1}_JUN{B,D}:-0.48432016808;GZF1:-0.484809748849;ZNF423:-0.496411994977;MED-1{core}:-0.496482960515;HBP1_HMGB_SSRP1_UBTF:-0.520949955955;SOX5:-0.526294526061;HNF1A:-0.528420943992;MTF1:-0.544330869207;FOXA2:-0.594657814471;PPARG:-0.598596932393;CDC5L:-0.599989947423;REST:-0.60129215751;RXR{A,B,G}:-0.603097987162;NFE2L1:-0.606509131845;ZEB1:-0.623609156721;GTF2I:-0.648070734537;KLF4:-0.660644746036;FOX{D1,D2}:-0.665950505476;ZBTB6:-0.670014673255;SREBF1,2:-0.680986352979;EGR1..3:-0.683622346493;XBP1:-0.687385583058;HAND1,2:-0.689696045389;GLI1..3:-0.693926233641;MYFfamily:-0.699716873721;UFEwm:-0.700355125746;VSX1,2:-0.701934468233;DBP:-0.705480216592;MZF1:-0.715226066332;RFX2..5_RFXANK_RFXAP:-0.719834910185;MEF2{A,B,C,D}:-0.721398404881;TFAP2B:-0.727023517069;TFAP2{A,C}:-0.739174770264;MAFB:-0.750046326914;BPTF:-0.753076664978;RXRA_VDR{dimer}:-0.755766692104;RFX1:-0.757812159613;NKX3-2:-0.781978817631;HMGA1,2:-0.793529283487;GCM1,2:-0.79746962649;SOX2:-0.84461503126;PATZ1:-0.84935854987;PAX1,9:-0.858544012554;GTF2A1,2:-0.862258444976;TLX1..3_NFIC{dimer}:-0.87379040625;TP53:-0.875802360501;NKX2-2,8:-0.905237847795;ZIC1..3:-0.90876598699;TGIF1:-0.913213775333;TFAP4:-0.91585843944;MYBL2:-0.928361554745;FOXO1,3,4:-0.93069378082;PAX5:-0.935068220585;SMAD1..7,9:-0.966042702013;SP1:-0.984163217869;MTE{core}:-0.989594663944;NFATC1..3:-1.01691008089;IKZF1:-1.03942263602;MAZ:-1.04061683184;JUN:-1.0475905735;TEAD1:-1.06467106713;SPZ1:-1.07572686675;PRDM1:-1.09051986091;ALX4:-1.12362593881;GFI1B:-1.12614066887;ESRRA:-1.14632887057;FOXL1:-1.16457314222;NR1H4:-1.17679970325;XCPE1{core}:-1.19430247901;TBX4,5:-1.22960202314;LMO2:-1.24058855518;ATF6:-1.3129251629;NR3C1:-1.36470808896;TAL1_TCF{3,4,12}:-1.44373926852;TFCP2:-1.5246259803;ESR1:-1.55853245783;HMX1:-1.89267619605;EBF1:-1.9138092093 | |top_motifs=GATA6:3.16373147958;POU2F1..3:2.22450166773;STAT5{A,B}:1.53540906131;MYB:1.49652843162;ALX1:1.46795285066;ZBTB16:1.43762813829;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:1.23527185324;bHLH_family:1.1652923212;AIRE:1.1540467445;EN1,2:1.12801792061;ELK1,4_GABP{A,B1}:1.11172811261;IKZF2:1.07101454692;NFY{A,B,C}:1.06167477292;PITX1..3:1.05256686545;PBX1:1.04247268087;NKX2-1,4:0.974925971391;TOPORS:0.87297266865;MYOD1:0.854480298608;ZNF143:0.85098475077;YY1:0.829326853744;POU1F1:0.815103741133;BREu{core}:0.798551580011;ELF1,2,4:0.782219895416;E2F1..5:0.743286382764;PAX8:0.679503769779;NRF1:0.647168497272;CUX2:0.639519420791;NKX3-1:0.636889106001;RBPJ:0.624599660592;CRX:0.603578695988;ATF4:0.549072369211;POU3F1..4:0.528158566802;ZNF148:0.513250373876;FOXP1:0.507576063934;HIF1A:0.506245537393;OCT4_SOX2{dimer}:0.505230846526;FOXQ1:0.49506981871;ATF5_CREB3:0.488524381037;FOX{I1,J2}:0.479035505795;STAT1,3:0.43976895329;CDX1,2,4:0.402828315466;FOXN1:0.383988152008;SPIB:0.377721989289;NKX6-1,2:0.342447753047;TFDP1:0.304732186766;HOXA9_MEIS1:0.296226478131;EVI1:0.270951472043;POU6F1:0.247556028791;NR5A1,2:0.243796453367;STAT2,4,6:0.238233590246;NR6A1:0.232518641537;IRF7:0.231158103891;SPI1:0.220929588412;ETS1,2:0.219904106833;TLX2:0.211156608374;CREB1:0.174871876105;NFE2:0.145434640536;HOX{A6,A7,B6,B7}:0.133897923027;DMAP1_NCOR{1,2}_SMARC:0.0992898272534;PAX4:0.0942213268676;SOX{8,9,10}:0.0888496992637;RUNX1..3:0.0857653900827;IRF1,2:0.0766642723078;PRRX1,2:0.0611192969918;RXR{A,B,G}_{NR1H2,PPAR}dimers:0.000252489716184;SOX17:-0.00261315036452;ZNF384:-0.00462431040719;SRF:-0.00565600676448;PAX3,7:-0.0198136561867;AR:-0.0230369462568;NFIX:-0.0322733985702;LHX3,4:-0.0413208386908;CEBPA,B_DDIT3:-0.0714290476044;HES1:-0.0768695711394;PAX6:-0.0784287492252;NANOG{mouse}:-0.0854753490724;ARID5B:-0.0974725403214;HOX{A4,D4}:-0.103607473509;ADNP_IRX_SIX_ZHX:-0.11138369971;HNF4A_NR2F1,2:-0.112757861762;AHR_ARNT_ARNT2:-0.144159401941;ZFP161:-0.144584027155;FOXD3:-0.146557779173;ATF2:-0.150875461016;NKX2-3_NKX2-5:-0.168256412451;HOX{A5,B5}:-0.188734107341;HSF1,2:-0.190277582138;EP300:-0.200322589775;POU5F1:-0.228699783851;PDX1:-0.270255917947;GFI1:-0.272150903005;NHLH1,2:-0.27315880593;BACH2:-0.2737830145;TEF:-0.28334508169;FOXM1:-0.285844756775;FOSL2:-0.297588323784;FOX{F1,F2,J1}:-0.303059728041;SNAI1..3:-0.311274546038;HIC1:-0.323482360945;RREB1:-0.336387696152;NFKB1_REL_RELA:-0.341813622346;NFIL3:-0.373641089372;NANOG:-0.393170278473;ZNF238:-0.394621081492;RORA:-0.398008418564;FOXP3:-0.406497247982;ONECUT1,2:-0.406579249862;T:-0.425228025518;GATA4:-0.427882844738;PAX2:-0.429927721036;HLF:-0.449591066459;TBP:-0.461940638455;LEF1_TCF7_TCF7L1,2:-0.474099674523;NFE2L2:-0.476827912816;FOS_FOS{B,L1}_JUN{B,D}:-0.48432016808;GZF1:-0.484809748849;ZNF423:-0.496411994977;MED-1{core}:-0.496482960515;HBP1_HMGB_SSRP1_UBTF:-0.520949955955;SOX5:-0.526294526061;HNF1A:-0.528420943992;MTF1:-0.544330869207;FOXA2:-0.594657814471;PPARG:-0.598596932393;CDC5L:-0.599989947423;REST:-0.60129215751;RXR{A,B,G}:-0.603097987162;NFE2L1:-0.606509131845;ZEB1:-0.623609156721;GTF2I:-0.648070734537;KLF4:-0.660644746036;FOX{D1,D2}:-0.665950505476;ZBTB6:-0.670014673255;SREBF1,2:-0.680986352979;EGR1..3:-0.683622346493;XBP1:-0.687385583058;HAND1,2:-0.689696045389;GLI1..3:-0.693926233641;MYFfamily:-0.699716873721;UFEwm:-0.700355125746;VSX1,2:-0.701934468233;DBP:-0.705480216592;MZF1:-0.715226066332;RFX2..5_RFXANK_RFXAP:-0.719834910185;MEF2{A,B,C,D}:-0.721398404881;TFAP2B:-0.727023517069;TFAP2{A,C}:-0.739174770264;MAFB:-0.750046326914;BPTF:-0.753076664978;RXRA_VDR{dimer}:-0.755766692104;RFX1:-0.757812159613;NKX3-2:-0.781978817631;HMGA1,2:-0.793529283487;GCM1,2:-0.79746962649;SOX2:-0.84461503126;PATZ1:-0.84935854987;PAX1,9:-0.858544012554;GTF2A1,2:-0.862258444976;TLX1..3_NFIC{dimer}:-0.87379040625;TP53:-0.875802360501;NKX2-2,8:-0.905237847795;ZIC1..3:-0.90876598699;TGIF1:-0.913213775333;TFAP4:-0.91585843944;MYBL2:-0.928361554745;FOXO1,3,4:-0.93069378082;PAX5:-0.935068220585;SMAD1..7,9:-0.966042702013;SP1:-0.984163217869;MTE{core}:-0.989594663944;NFATC1..3:-1.01691008089;IKZF1:-1.03942263602;MAZ:-1.04061683184;JUN:-1.0475905735;TEAD1:-1.06467106713;SPZ1:-1.07572686675;PRDM1:-1.09051986091;ALX4:-1.12362593881;GFI1B:-1.12614066887;ESRRA:-1.14632887057;FOXL1:-1.16457314222;NR1H4:-1.17679970325;XCPE1{core}:-1.19430247901;TBX4,5:-1.22960202314;LMO2:-1.24058855518;ATF6:-1.3129251629;NR3C1:-1.36470808896;TAL1_TCF{3,4,12}:-1.44373926852;TFCP2:-1.5246259803;ESR1:-1.55853245783;HMX1:-1.89267619605;EBF1:-1.9138092093 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10752-110D5;search_select_hide=table117:FF:10752-110D5 | |||
}} | }} |
Latest revision as of 15:02, 3 June 2020
Name: | leukemia, chronic megakaryoblastic cell line:MEG-01 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11859 |
Sample type: | cell lines |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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RNA-Seq Accession numbers | ||||||||||||||||||||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11859
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11859
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.424 |
10 | 10 | 0.0395 |
100 | 100 | 0.937 |
101 | 101 | 0.189 |
102 | 102 | 0.411 |
103 | 103 | 0.686 |
104 | 104 | 0.973 |
105 | 105 | 0.484 |
106 | 106 | 0.114 |
107 | 107 | 0.172 |
108 | 108 | 0.394 |
109 | 109 | 0.234 |
11 | 11 | 0.394 |
110 | 110 | 0.863 |
111 | 111 | 0.0597 |
112 | 112 | 0.926 |
113 | 113 | 0.435 |
114 | 114 | 0.527 |
115 | 115 | 0.0173 |
116 | 116 | 0.299 |
117 | 117 | 0.0778 |
118 | 118 | 0.193 |
119 | 119 | 0.228 |
12 | 12 | 0.958 |
120 | 120 | 0.357 |
121 | 121 | 0.632 |
122 | 122 | 0.86 |
123 | 123 | 0.277 |
124 | 124 | 0.68 |
125 | 125 | 0.48 |
126 | 126 | 0.239 |
127 | 127 | 0.268 |
128 | 128 | 0.096 |
129 | 129 | 0.143 |
13 | 13 | 0.00192 |
130 | 130 | 0.705 |
131 | 131 | 0.547 |
132 | 132 | 0.186 |
133 | 133 | 0.172 |
134 | 134 | 0.527 |
135 | 135 | 0.0118 |
136 | 136 | 0.0247 |
137 | 137 | 0.817 |
138 | 138 | 0.987 |
139 | 139 | 0.153 |
14 | 14 | 0.504 |
140 | 140 | 0.571 |
141 | 141 | 0.284 |
142 | 142 | 0.434 |
143 | 143 | 0.442 |
144 | 144 | 0.534 |
145 | 145 | 0.363 |
146 | 146 | 0.154 |
147 | 147 | 0.213 |
148 | 148 | 0.37 |
149 | 149 | 0.00245 |
15 | 15 | 0.831 |
150 | 150 | 0.826 |
151 | 151 | 0.228 |
152 | 152 | 0.111 |
153 | 153 | 0.823 |
154 | 154 | 0.829 |
155 | 155 | 0.303 |
156 | 156 | 0.678 |
157 | 157 | 0.607 |
158 | 158 | 0.727 |
159 | 159 | 0.258 |
16 | 16 | 0.44 |
160 | 160 | 0.637 |
161 | 161 | 0.367 |
162 | 162 | 0.862 |
163 | 163 | 0.28 |
164 | 164 | 0.926 |
165 | 165 | 0.871 |
166 | 166 | 0.177 |
167 | 167 | 0.43 |
168 | 168 | 0.386 |
169 | 169 | 0.527 |
17 | 17 | 0.926 |
18 | 18 | 0.984 |
19 | 19 | 0.534 |
2 | 2 | 0.0258 |
20 | 20 | 0.0125 |
21 | 21 | 0.135 |
22 | 22 | 0.501 |
23 | 23 | 0.0019 |
24 | 24 | 0.279 |
25 | 25 | 0.521 |
26 | 26 | 0.289 |
27 | 27 | 0.0435 |
28 | 28 | 0.18 |
29 | 29 | 0.221 |
3 | 3 | 0.404 |
30 | 30 | 0.0094 |
31 | 31 | 0.399 |
32 | 32 | 0.0078 |
33 | 33 | 0.182 |
34 | 34 | 0.295 |
35 | 35 | 0.817 |
36 | 36 | 0.0389 |
37 | 37 | 0.302 |
38 | 38 | 0.972 |
39 | 39 | 0.211 |
4 | 4 | 0.0893 |
40 | 40 | 0.563 |
41 | 41 | 0.192 |
42 | 42 | 0.258 |
43 | 43 | 0.841 |
44 | 44 | 0.665 |
45 | 45 | 0.508 |
46 | 46 | 0.386 |
47 | 47 | 0.178 |
48 | 48 | 0.259 |
49 | 49 | 0.581 |
5 | 5 | 0.563 |
50 | 50 | 0.92 |
51 | 51 | 0.886 |
52 | 52 | 0.159 |
53 | 53 | 0.447 |
54 | 54 | 0.533 |
55 | 55 | 0.124 |
56 | 56 | 0.893 |
57 | 57 | 0.431 |
58 | 58 | 0.314 |
59 | 59 | 0.181 |
6 | 6 | 0.263 |
60 | 60 | 0.426 |
61 | 61 | 0.0645 |
62 | 62 | 0.779 |
63 | 63 | 0.803 |
64 | 64 | 0.648 |
65 | 65 | 0.263 |
66 | 66 | 3.18647e-7 |
67 | 67 | 0.478 |
68 | 68 | 0.208 |
69 | 69 | 0.675 |
7 | 7 | 0.276 |
70 | 70 | 0.794 |
71 | 71 | 0.114 |
72 | 72 | 0.848 |
73 | 73 | 0.965 |
74 | 74 | 0.228 |
75 | 75 | 0.00386 |
76 | 76 | 0.349 |
77 | 77 | 0.0424 |
78 | 78 | 0.038 |
79 | 79 | 0.0285 |
8 | 8 | 0.419 |
80 | 80 | 0.0127 |
81 | 81 | 0.509 |
82 | 82 | 0.254 |
83 | 83 | 0.402 |
84 | 84 | 0.986 |
85 | 85 | 0.357 |
86 | 86 | 0.919 |
87 | 87 | 0.123 |
88 | 88 | 0.453 |
89 | 89 | 0.131 |
9 | 9 | 0.35 |
90 | 90 | 0.134 |
91 | 91 | 0.145 |
92 | 92 | 0.314 |
93 | 93 | 0.925 |
94 | 94 | 0.878 |
95 | 95 | 0.0425 |
96 | 96 | 0.763 |
97 | 97 | 0.479 |
98 | 98 | 0.416 |
99 | 99 | 0.391 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11859
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0102581 MEG-01 cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000988 (hematopoietic cell)
0000548 (animal cell)
0000763 (myeloid cell)
0002371 (somatic cell)
0000255 (eukaryotic cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
2531 (hematologic cancer)
14566 (disease of cellular proliferation)
0060083 (immune system cancer)
1240 (leukemia)
1036 (chronic leukemia)
8692 (myeloid leukemia)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100737 (leukemia cell line sample)
0102580 (chronic myeloid leukemia cell line sample)
0101035 (hematopoietic cell line sample)
0100740 (myeloid leukemia cell line sample)
0102581 (MEG-01 cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000049 (common myeloid progenitor)
CL:0000134 (mesenchymal cell)