FF:10778-110G4: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@SAMD00005769 | |||
|accession_numbers=CAGE;DRX007903;DRR008775;DRZ000200;DRZ001585;DRZ011550;DRZ012935 | |||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0002107,UBERON:0002100,UBERON:0002384,UBERON:0000479,UBERON:0001007,UBERON:0004119,UBERON:0000062,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0000467,UBERON:0001062,UBERON:0000480,UBERON:0009569,UBERON:0002368,UBERON:0005177,UBERON:0002365,UBERON:0005172,UBERON:0006925,UBERON:0002530,UBERON:0010317,UBERON:0005173,UBERON:0002417,UBERON:0000949,UBERON:0002330,UBERON:0000916,UBERON:0002423 | ||
|ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0002320,CL:0002371,CL:0000499,CL:0000327,CL:0000255,CL:0000057,CL:0000632 | |ancestors_in_cell_lineage_facet=CL:0000000,CL:0000003,CL:0000548,CL:0000151,CL:0002320,CL:0002371,CL:0000499,CL:0000327,CL:0000255,CL:0000057,CL:0000632 | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.67!46.12!ZBED1;;chr4:174451370..174451387,-!p1@HAND2!1.65!43.96!HAND2;;chr1:197886461..197886558,+!p1@LHX9!1.47!28.46!LHX9;;chr18:53068911..53068935,-!p4@TCF4!1.41!28.10!TCF4;;chr18:19749386..19749404,+!p2@GATA6!1.40!33.87!GATA6;;chr16:86544113..86544145,+!p1@FOXF1!1.39!29.18!FOXF1;;chr21:38071430..38071456,+!p1@SIM2!1.39!23.78!SIM2;;chr8:11561684..11561751,+!p1@GATA4!1.38!23.06!GATA4;;chr8:106330656..106330684,+!p1@ZFPM2!1.35!55.49!ZFPM2;;chr11:46299199..46299233,+!p1@CREB3L1!1.32!99.80!CREB3L1;;chr17:1959369..1959388,+!p2@HIC1!1.32!51.16!HIC1;;chr18:19749541..19749557,+!p1@GATA6!1.26!52.96!GATA6;;chr4:174450089..174450153,-!p2@HAND2!1.26!17.29!HAND2;;chr12:80085061..80085119,-!p6@PAWR!1.24!26.30!PAWR;;chr11:125034640..125034655,+!p1@PKNOX2!1.16!13.33!PKNOX2;;chr10:64576105..64576133,-!p1@EGR2!1.15!26.66!EGR2;;chr2:46524537..46524553,+!p1@EPAS1!1.14!1252.40!EPAS1;;chr2:66662281..66662308,+!p1@MEIS1!1.14!43.96!MEIS1;;chr20:50179368..50179392,-!p2@NFATC2!1.13!16.21!NFATC2;;chr6:134210243..134210257,+!p1@TCF21!1.09!11.17!TCF21;;chr7:35293685..35293718,-!p1@TBX20!1.09!11.17!TBX20;;chr10:63809106..63809127,+!p1@ARID5B!1.07!147.00!ARID5B;;chr7:1577899..1577943,+!p3@MAFK!1.07!10.81!MAFK;;chr4:174451350..174451363,-!p3@HAND2!1.06!10.45!HAND2;;chr1:170633058..170633084,+!p5@PRRX1!1.04!10.09!PRRX1;;chr2:66662396..66662407,+!p4@MEIS1!1.03!9.73!MEIS1;;chr3:141105705..141105770,+!p4@ZBTB38!1.01!11.17!ZBTB38;;chr3:178789522..178789564,-!p2@ZMAT3!0.99!65.93!ZMAT3;;chr11:46299539..46299620,+!p2@CREB3L1!0.99!15.13!CREB3L1;;chr8:55370487..55370503,+!p1@SOX17!0.98!8.65!SOX17;;chr15:96869255..96869291,+!p6@NR2F2!0.97!15.49!NR2F2;;chr8:106330696..106330719,+!p2@ZFPM2!0.96!10.45!ZFPM2;;chr7:44143925..44143970,+!p1@AEBP1!0.95!182.31!AEBP1;;chr5:139492456..139492489,+!p7@PURA!0.95!7.93!PURA;;chr12:80085120..80085156,-!p14@PAWR!0.95!7.93!PAWR;;chr16:86600426..86600441,+!p1@FOXC2!0.93!19.10!FOXC2;;chr7:44143978..44143989,+!p2@AEBP1!0.92!13.69!AEBP1;;chr12:26277817..26277863,-!p2@BHLHE41!0.91!9.73!BHLHE41;;chr5:72744445..72744466,-!p2@FOXD1!0.90!11.89!FOXD1;;chr2:121493425..121493474,+!p1@GLI2!0.89!15.49!GLI2;;chr9:100615499..100615519,+!p1@FOXE1!0.89!6.85!FOXE1;;chr15:96874012..96874042,+!p2@NR2F2!0.88!63.05!NR2F2;;chr15:42749722..42749739,-!p2@ZFP106!0.86!11.53!ZFP106;;chr8:72756267..72756296,-!p4@MSC!0.86!9.37!MSC;;chr8:72756063..72756125,-!p1@MSC!0.85!12.97!MSC;;chr8:72756667..72756736,-!p2@MSC!0.85!9.73!MSC;;chr5:142780189..142780223,-!p6@NR3C1!0.85!6.13!NR3C1;;chr7:150945754..150945789,-!p2@SMARCD3!0.84!19.10!SMARCD3;;chr3:141121847..141121868,+!p5@ZBTB38!0.84!9.37!ZBTB38;;chr19:42636586..42636607,-!p1@POU2F2!0.83!16.93!POU2F2;;chr12:66218255..66218304,+!p3@HMGA2!0.83!16.21!HMGA2;;chr12:54402745..54402788,+!p1@HOXC8!0.83!5.76!HOXC8;;chr10:63809013..63809041,+!p3@ARID5B!0.81!32.79!ARID5B;;chr2:66662510..66662521,+!p6@MEIS1!0.81!5.40!MEIS1;;chr16:86600870..86600921,+!p2@FOXC2!0.81!5.40!FOXC2;;chr18:19749353..19749367,+!p4@GATA6!0.81!5.40!GATA6;;chr5:142780237..142780261,-!p7@NR3C1!0.81!5.40!NR3C1;;chr21:36260295..36260310,-!p3@RUNX1!0.80!9.01!RUNX1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.78!5.04!HOXC5;;chr20:48599506..48599526,+!p1@SNAI1!0.77!34.23!SNAI1;;chr2:66662249..66662267,+!p2@MEIS1!0.77!20.54!MEIS1;;chr8:72756213..72756243,-!p5@MSC!0.77!6.49!MSC;;chr6:144329384..144329405,-!p1@PLAGL1!0.76!60.89!PLAGL1;;chr2:208030647..208030689,-!p1@KLF7!0.76!43.60!KLF7;;chr9:102584159..102584174,+!p2@NR4A3!0.76!9.01!NR4A3;;chr21:36260343..36260402,-!p6@RUNX1!0.76!7.93!RUNX1;;chr1:23885981..23886002,-!p1@ID3!0.75!900.39!ID3;;chr19:47523058..47523114,+!p1@NPAS1!0.75!4.68!NPAS1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.74!44.32!PPP1R13L;;chr10:63853436..63853442,+!p4@ARID5B!0.74!26.66!ARID5B;;chr10:63809077..63809089,+!p5@ARID5B!0.74!10.45!ARID5B;;chr11:12696071..12696086,+!p3@TEAD1!0.74!6.13!TEAD1;;chr15:96869222..96869251,+!p18@NR2F2!0.74!5.40!NR2F2;;chr1:170632959..170632987,+!p4@PRRX1!0.74!5.04!PRRX1;;chr12:52445218..52445237,+!p1@NR4A1!0.73!61.97!NR4A1;;chr2:176994408..176994492,+!p1@HOXD8!0.73!4.32!HOXD8;;chr15:60884706..60884743,-!p1@RORA!0.72!24.50!RORA;;chr2:239756671..239756732,+!p1@TWIST2!0.72!15.13!TWIST2;;chr12:66218378..66218401,+!p6@HMGA2!0.72!6.85!HMGA2;;chr7:137686791..137686821,-!p1@CREB3L2!0.71!136.19!CREB3L2;;chr21:36260980..36261011,-!p1@RUNX1!0.71!133.67!RUNX1;;chr5:92918894..92918912,+!p2@NR2F1!0.71!14.77!NR2F1;;chr1:170632285..170632309,+!p1@PRRX1!0.70!4.68!PRRX1;;chr17:46126136..46126152,+!p1@NFE2L1!0.69!231.31!NFE2L1;;chr2:101436564..101436647,+!p1@NPAS2!0.69!90.07!NPAS2;;chr12:66218598..66218645,+!p2@HMGA2!0.69!20.18!HMGA2;;chr3:71630980..71631110,-!p3@FOXP1!0.69!15.13!FOXP1;;chr17:46621937..46621966,-!p2@HOXB2!0.69!11.53!HOXB2;;chr7:137686763..137686784,-!p5@CREB3L2!0.69!7.21!CREB3L2;;chr20:39946361..39946379,-!p2@ZHX3!0.68!12.61!ZHX3;;chr18:19749517..19749531,+!p3@GATA6!0.68!7.21!GATA6;;chr2:239756739..239756755,+!p2@TWIST2!0.68!6.85!TWIST2;;chr1:170633348..170633399,+!p2@PRRX1!0.68!5.40!PRRX1;;chr7:44143997..44144008,+!p3@AEBP1!0.68!5.04!AEBP1;;chr2:121493492..121493537,+!p2@GLI2!0.67!6.49!GLI2;;chr10:63809090..63809097,+!p7@ARID5B!0.67!5.40!ARID5B;;chr2:66662895..66662907,+!p3@MEIS1!0.67!4.68!MEIS1;;chr8:49833978..49833996,-!p1@SNAI2!0.66!86.11!SNAI2;;chr3:71114066..71114114,-!p1@FOXP1!0.66!85.03!FOXP1;;chr5:72744594..72744609,-!p1@FOXD1!0.66!18.74!FOXD1;;chr3:114343768..114343822,-!p1@ZBTB20!0.66!18.01!ZBTB20;;chr3:5021268..5021282,+!p4@BHLHE40!0.66!7.93!BHLHE40;;chr15:96874145..96874166,+!p7@NR2F2!0.66!7.57!NR2F2;;chr18:19749504..19749515,+!p5@GATA6!0.66!3.60!GATA6;;chr3:101575889..101575903,+!p3@NFKBIZ!0.66!3.60!NFKBIZ;;chr12:54402790..54402805,+!p2@HOXC8!0.66!3.60!HOXC8;;chr20:30433396..30433414,-!p1@FOXS1!0.66!3.60!FOXS1;;chr8:49833948..49833973,-!p2@SNAI2!0.65!25.58!SNAI2;;chr6:144289132..144289134,-!p3@PLAGL1!0.65!9.01!PLAGL1;;chr19:47922750..47922795,-!p1@MEIS3!0.65!6.13!MEIS3;;chr2:238536207..238536290,+!p2@LRRFIP1!0.64!38.91!LRRFIP1;;chr17:1958388..1958404,+!p1@HIC1!0.64!25.22!HIC1;;chr12:27485762..27485776,+!p3@ARNTL2!0.64!10.09!ARNTL2;;chr7:137563905..137563916,-!p11@CREB3L2!0.64!5.04!CREB3L2;;chr9:4300050..4300118,-!p1@GLIS3!0.63!24.86!GLIS3;;chr12:27485823..27485868,+!p2@ARNTL2!0.63!15.49!ARNTL2;;chr2:19558373..19558392,-!p1@OSR1!0.63!10.09!OSR1;;chr15:60884747..60884774,-!p3@RORA!0.63!9.01!RORA;;chr7:137564014..137564042,-!p8@CREB3L2!0.63!6.13!CREB3L2;;chr7:97840743..97840786,+!p1@BHLHA15!0.63!3.24!BHLHA15;;chr8:72756194..72756208,-!p9@MSC!0.63!3.24!MSC;;chr2:66662797..66662818,+!p10@MEIS1!0.63!3.24!MEIS1;;chr1:170632723..170632739,+!p8@PRRX1!0.63!3.24!PRRX1;;chr11:125034586..125034604,+!p3@PKNOX2!0.63!3.24!PKNOX2;;chr16:31076332..31076388,-!p3@ZNF668!0.63!3.24!ZNF668;;chr10:63809134..63809145,+!p6@ARID5B!0.62!8.29!ARID5B;;chr12:80084279..80084293,-!p8@PAWR!0.62!5.76!PAWR;;chr3:141087393..141087426,+!p3@ZBTB38!0.61!14.41!ZBTB38;;chr11:12696002..12696022,+!p2@TEAD1!0.61!8.65!TEAD1;;chr20:3388579..3388619,-!p3@C20orf194!0.61!8.29!C20orf194;;chr12:115121962..115121987,-!p1@TBX3!0.60!30.27!TBX3;;chr18:53255415..53255491,-!p1@TCF4!0.60!30.27!TCF4;;chr2:85360499..85360598,+!p1@TCF7L1!0.60!19.82!TCF7L1;;chr15:96874244..96874259,+!p5@NR2F2!0.60!8.29!NR2F2;;chr1:200379104..200379128,-!p2@ZNF281!0.60!8.29!ZNF281;;chr5:139487608..139487663,+!p3@PURA!0.60!7.21!PURA;;chr3:71630690..71630750,-!p11@FOXP1!0.60!5.40!FOXP1;;chr15:96869292..96869320,+!p15@NR2F2!0.60!4.68!NR2F2;;chr5:137804357..137804390,+!p4@EGR1!0.60!3.60!EGR1;;chr12:77459306..77459365,-!p1@E2F7!0.59!44.32!E2F7;;chr15:96873984..96873999,+!p3@NR2F2!0.59!25.58!NR2F2;;chr5:321810..321877,+!p1@AHRR!0.59!10.81!AHRR;;chr3:178789622..178789633,-!p3@ZMAT3!0.59!6.13!ZMAT3;;chr17:7382834..7382855,-!p6@ZBTB4!0.59!5.40!ZBTB4;;chr17:59477403..59477414,+!p4@TBX2!0.59!2.88!TBX2;;chr8:72756380..72756427,-!p8@MSC!0.59!2.88!MSC;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.59!2.88!HOXC5;;chr19:46801639..46801699,+!p1@HIF3A!0.59!2.88!HIF3A;;chr1:170632250..170632277,+!p7@PRRX1!0.59!2.88!PRRX1;;chr3:141087339..141087387,+!p2@ZBTB38!0.58!34.95!ZBTB38;;chr14:62162285..62162296,+!p3@HIF1A!0.58!17.65!HIF1A;;chr21:30671690..30671762,+!p2@BACH1!0.58!11.17!BACH1;;chr17:59477233..59477263,+!p1@TBX2!0.58!10.09!TBX2;;chr2:113993052..113993097,-!p2@PAX8!0.58!7.21!PAX8;;chr15:96874216..96874236,+!p13@NR2F2!0.58!4.68!NR2F2;;chr19:31840130..31840160,-!p2@TSHZ3!0.58!4.68!TSHZ3;;chr2:46612334..46612349,+!p6@EPAS1!0.58!3.96!EPAS1;;chr3:178789566..178789620,-!p1@ZMAT3!0.57!59.81!ZMAT3;;chr10:77161504..77161530,-!p1@ZNF503!0.57!44.68!ZNF503;;chr2:46524506..46524514,+!p5@EPAS1!0.57!5.76!EPAS1;;chr20:50721803..50721857,-!p2@ZFP64!0.57!4.68!ZFP64;;chr2:200322654..200322707,-!p2@SATB2!0.57!4.32!SATB2;;chr16:73093174..73093209,-!p3@ZFHX3!0.57!3.96!ZFHX3;;chr4:57774042..57774114,+!p1@REST!0.56!79.99!REST;;chr8:116681123..116681143,-!p4@TRPS1!0.56!5.76!TRPS1;;chr3:101568349..101568365,+!p1@NFKBIZ!0.55!168.62!NFKBIZ;;chr18:77155922..77155939,+!p1@NFATC1!0.55!8.29!NFATC1;;chr15:96876966..96877017,+!p12@NR2F2!0.55!3.96!NR2F2;;chr12:26277929..26277955,-!p3@BHLHE41!0.55!3.96!BHLHE41;;chr17:59477275..59477286,+!p3@TBX2!0.55!3.60!TBX2;;chr5:137804405..137804444,+!p3@EGR1!0.55!3.24!EGR1;;chr7:150945865..150945896,-!p4@SMARCD3!0.55!2.52!SMARCD3;;chr17:7382810..7382822,-!p12@ZBTB4!0.55!2.52!ZBTB4;;chr1:170632683..170632696,+!p12@PRRX1!0.55!2.52!PRRX1;;chr21:38071403..38071428,+!p2@SIM2!0.55!2.52!SIM2;;chr21:38071462..38071474,+!p3@SIM2!0.55!2.52!SIM2;;chr11:125034605..125034636,+!p2@PKNOX2!0.55!2.52!PKNOX2;;chr22:38598086..38598105,+!p1@MAFF!0.54!33.51!MAFF;;chr5:92918919..92918942,+!p1@NR2F1!0.54!13.69!NR2F1;;chr7:137563945..137564001,-!p6@CREB3L2!0.54!6.85!CREB3L2;;chr3:71114115..71114126,-!p14@FOXP1!0.54!4.68!FOXP1;;chr2:208031943..208031978,-!p5@KLF7!0.54!3.60!KLF7;;chr12:54447599..54447630,+!p3@HOXC4!0.54!3.24!HOXC4;;chr8:72756637..72756664,-!p3@MSC!0.54!2.88!MSC;;chr10:111967345..111967422,+!p1@MX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| |expression_enrichment_score=chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.67!46.12!ZBED1;;chr4:174451370..174451387,-!p1@HAND2!1.65!43.96!HAND2;;chr1:197886461..197886558,+!p1@LHX9!1.47!28.46!LHX9;;chr18:53068911..53068935,-!p4@TCF4!1.41!28.10!TCF4;;chr18:19749386..19749404,+!p2@GATA6!1.40!33.87!GATA6;;chr16:86544113..86544145,+!p1@FOXF1!1.39!29.18!FOXF1;;chr21:38071430..38071456,+!p1@SIM2!1.39!23.78!SIM2;;chr8:11561684..11561751,+!p1@GATA4!1.38!23.06!GATA4;;chr8:106330656..106330684,+!p1@ZFPM2!1.35!55.49!ZFPM2;;chr11:46299199..46299233,+!p1@CREB3L1!1.32!99.80!CREB3L1;;chr17:1959369..1959388,+!p2@HIC1!1.32!51.16!HIC1;;chr18:19749541..19749557,+!p1@GATA6!1.26!52.96!GATA6;;chr4:174450089..174450153,-!p2@HAND2!1.26!17.29!HAND2;;chr12:80085061..80085119,-!p6@PAWR!1.24!26.30!PAWR;;chr11:125034640..125034655,+!p1@PKNOX2!1.16!13.33!PKNOX2;;chr10:64576105..64576133,-!p1@EGR2!1.15!26.66!EGR2;;chr2:46524537..46524553,+!p1@EPAS1!1.14!1252.40!EPAS1;;chr2:66662281..66662308,+!p1@MEIS1!1.14!43.96!MEIS1;;chr20:50179368..50179392,-!p2@NFATC2!1.13!16.21!NFATC2;;chr6:134210243..134210257,+!p1@TCF21!1.09!11.17!TCF21;;chr7:35293685..35293718,-!p1@TBX20!1.09!11.17!TBX20;;chr10:63809106..63809127,+!p1@ARID5B!1.07!147.00!ARID5B;;chr7:1577899..1577943,+!p3@MAFK!1.07!10.81!MAFK;;chr4:174451350..174451363,-!p3@HAND2!1.06!10.45!HAND2;;chr1:170633058..170633084,+!p5@PRRX1!1.04!10.09!PRRX1;;chr2:66662396..66662407,+!p4@MEIS1!1.03!9.73!MEIS1;;chr3:141105705..141105770,+!p4@ZBTB38!1.01!11.17!ZBTB38;;chr3:178789522..178789564,-!p2@ZMAT3!0.99!65.93!ZMAT3;;chr11:46299539..46299620,+!p2@CREB3L1!0.99!15.13!CREB3L1;;chr8:55370487..55370503,+!p1@SOX17!0.98!8.65!SOX17;;chr15:96869255..96869291,+!p6@NR2F2!0.97!15.49!NR2F2;;chr8:106330696..106330719,+!p2@ZFPM2!0.96!10.45!ZFPM2;;chr7:44143925..44143970,+!p1@AEBP1!0.95!182.31!AEBP1;;chr5:139492456..139492489,+!p7@PURA!0.95!7.93!PURA;;chr12:80085120..80085156,-!p14@PAWR!0.95!7.93!PAWR;;chr16:86600426..86600441,+!p1@FOXC2!0.93!19.10!FOXC2;;chr7:44143978..44143989,+!p2@AEBP1!0.92!13.69!AEBP1;;chr12:26277817..26277863,-!p2@BHLHE41!0.91!9.73!BHLHE41;;chr5:72744445..72744466,-!p2@FOXD1!0.90!11.89!FOXD1;;chr2:121493425..121493474,+!p1@GLI2!0.89!15.49!GLI2;;chr9:100615499..100615519,+!p1@FOXE1!0.89!6.85!FOXE1;;chr15:96874012..96874042,+!p2@NR2F2!0.88!63.05!NR2F2;;chr15:42749722..42749739,-!p2@ZFP106!0.86!11.53!ZFP106;;chr8:72756267..72756296,-!p4@MSC!0.86!9.37!MSC;;chr8:72756063..72756125,-!p1@MSC!0.85!12.97!MSC;;chr8:72756667..72756736,-!p2@MSC!0.85!9.73!MSC;;chr5:142780189..142780223,-!p6@NR3C1!0.85!6.13!NR3C1;;chr7:150945754..150945789,-!p2@SMARCD3!0.84!19.10!SMARCD3;;chr3:141121847..141121868,+!p5@ZBTB38!0.84!9.37!ZBTB38;;chr19:42636586..42636607,-!p1@POU2F2!0.83!16.93!POU2F2;;chr12:66218255..66218304,+!p3@HMGA2!0.83!16.21!HMGA2;;chr12:54402745..54402788,+!p1@HOXC8!0.83!5.76!HOXC8;;chr10:63809013..63809041,+!p3@ARID5B!0.81!32.79!ARID5B;;chr2:66662510..66662521,+!p6@MEIS1!0.81!5.40!MEIS1;;chr16:86600870..86600921,+!p2@FOXC2!0.81!5.40!FOXC2;;chr18:19749353..19749367,+!p4@GATA6!0.81!5.40!GATA6;;chr5:142780237..142780261,-!p7@NR3C1!0.81!5.40!NR3C1;;chr21:36260295..36260310,-!p3@RUNX1!0.80!9.01!RUNX1;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!0.78!5.04!HOXC5;;chr20:48599506..48599526,+!p1@SNAI1!0.77!34.23!SNAI1;;chr2:66662249..66662267,+!p2@MEIS1!0.77!20.54!MEIS1;;chr8:72756213..72756243,-!p5@MSC!0.77!6.49!MSC;;chr6:144329384..144329405,-!p1@PLAGL1!0.76!60.89!PLAGL1;;chr2:208030647..208030689,-!p1@KLF7!0.76!43.60!KLF7;;chr9:102584159..102584174,+!p2@NR4A3!0.76!9.01!NR4A3;;chr21:36260343..36260402,-!p6@RUNX1!0.76!7.93!RUNX1;;chr1:23885981..23886002,-!p1@ID3!0.75!900.39!ID3;;chr19:47523058..47523114,+!p1@NPAS1!0.75!4.68!NPAS1;;chr19:45908292..45908374,-!p1@PPP1R13L!0.74!44.32!PPP1R13L;;chr10:63853436..63853442,+!p4@ARID5B!0.74!26.66!ARID5B;;chr10:63809077..63809089,+!p5@ARID5B!0.74!10.45!ARID5B;;chr11:12696071..12696086,+!p3@TEAD1!0.74!6.13!TEAD1;;chr15:96869222..96869251,+!p18@NR2F2!0.74!5.40!NR2F2;;chr1:170632959..170632987,+!p4@PRRX1!0.74!5.04!PRRX1;;chr12:52445218..52445237,+!p1@NR4A1!0.73!61.97!NR4A1;;chr2:176994408..176994492,+!p1@HOXD8!0.73!4.32!HOXD8;;chr15:60884706..60884743,-!p1@RORA!0.72!24.50!RORA;;chr2:239756671..239756732,+!p1@TWIST2!0.72!15.13!TWIST2;;chr12:66218378..66218401,+!p6@HMGA2!0.72!6.85!HMGA2;;chr7:137686791..137686821,-!p1@CREB3L2!0.71!136.19!CREB3L2;;chr21:36260980..36261011,-!p1@RUNX1!0.71!133.67!RUNX1;;chr5:92918894..92918912,+!p2@NR2F1!0.71!14.77!NR2F1;;chr1:170632285..170632309,+!p1@PRRX1!0.70!4.68!PRRX1;;chr17:46126136..46126152,+!p1@NFE2L1!0.69!231.31!NFE2L1;;chr2:101436564..101436647,+!p1@NPAS2!0.69!90.07!NPAS2;;chr12:66218598..66218645,+!p2@HMGA2!0.69!20.18!HMGA2;;chr3:71630980..71631110,-!p3@FOXP1!0.69!15.13!FOXP1;;chr17:46621937..46621966,-!p2@HOXB2!0.69!11.53!HOXB2;;chr7:137686763..137686784,-!p5@CREB3L2!0.69!7.21!CREB3L2;;chr20:39946361..39946379,-!p2@ZHX3!0.68!12.61!ZHX3;;chr18:19749517..19749531,+!p3@GATA6!0.68!7.21!GATA6;;chr2:239756739..239756755,+!p2@TWIST2!0.68!6.85!TWIST2;;chr1:170633348..170633399,+!p2@PRRX1!0.68!5.40!PRRX1;;chr7:44143997..44144008,+!p3@AEBP1!0.68!5.04!AEBP1;;chr2:121493492..121493537,+!p2@GLI2!0.67!6.49!GLI2;;chr10:63809090..63809097,+!p7@ARID5B!0.67!5.40!ARID5B;;chr2:66662895..66662907,+!p3@MEIS1!0.67!4.68!MEIS1;;chr8:49833978..49833996,-!p1@SNAI2!0.66!86.11!SNAI2;;chr3:71114066..71114114,-!p1@FOXP1!0.66!85.03!FOXP1;;chr5:72744594..72744609,-!p1@FOXD1!0.66!18.74!FOXD1;;chr3:114343768..114343822,-!p1@ZBTB20!0.66!18.01!ZBTB20;;chr3:5021268..5021282,+!p4@BHLHE40!0.66!7.93!BHLHE40;;chr15:96874145..96874166,+!p7@NR2F2!0.66!7.57!NR2F2;;chr18:19749504..19749515,+!p5@GATA6!0.66!3.60!GATA6;;chr3:101575889..101575903,+!p3@NFKBIZ!0.66!3.60!NFKBIZ;;chr12:54402790..54402805,+!p2@HOXC8!0.66!3.60!HOXC8;;chr20:30433396..30433414,-!p1@FOXS1!0.66!3.60!FOXS1;;chr8:49833948..49833973,-!p2@SNAI2!0.65!25.58!SNAI2;;chr6:144289132..144289134,-!p3@PLAGL1!0.65!9.01!PLAGL1;;chr19:47922750..47922795,-!p1@MEIS3!0.65!6.13!MEIS3;;chr2:238536207..238536290,+!p2@LRRFIP1!0.64!38.91!LRRFIP1;;chr17:1958388..1958404,+!p1@HIC1!0.64!25.22!HIC1;;chr12:27485762..27485776,+!p3@ARNTL2!0.64!10.09!ARNTL2;;chr7:137563905..137563916,-!p11@CREB3L2!0.64!5.04!CREB3L2;;chr9:4300050..4300118,-!p1@GLIS3!0.63!24.86!GLIS3;;chr12:27485823..27485868,+!p2@ARNTL2!0.63!15.49!ARNTL2;;chr2:19558373..19558392,-!p1@OSR1!0.63!10.09!OSR1;;chr15:60884747..60884774,-!p3@RORA!0.63!9.01!RORA;;chr7:137564014..137564042,-!p8@CREB3L2!0.63!6.13!CREB3L2;;chr7:97840743..97840786,+!p1@BHLHA15!0.63!3.24!BHLHA15;;chr8:72756194..72756208,-!p9@MSC!0.63!3.24!MSC;;chr2:66662797..66662818,+!p10@MEIS1!0.63!3.24!MEIS1;;chr1:170632723..170632739,+!p8@PRRX1!0.63!3.24!PRRX1;;chr11:125034586..125034604,+!p3@PKNOX2!0.63!3.24!PKNOX2;;chr16:31076332..31076388,-!p3@ZNF668!0.63!3.24!ZNF668;;chr10:63809134..63809145,+!p6@ARID5B!0.62!8.29!ARID5B;;chr12:80084279..80084293,-!p8@PAWR!0.62!5.76!PAWR;;chr3:141087393..141087426,+!p3@ZBTB38!0.61!14.41!ZBTB38;;chr11:12696002..12696022,+!p2@TEAD1!0.61!8.65!TEAD1;;chr20:3388579..3388619,-!p3@C20orf194!0.61!8.29!C20orf194;;chr12:115121962..115121987,-!p1@TBX3!0.60!30.27!TBX3;;chr18:53255415..53255491,-!p1@TCF4!0.60!30.27!TCF4;;chr2:85360499..85360598,+!p1@TCF7L1!0.60!19.82!TCF7L1;;chr15:96874244..96874259,+!p5@NR2F2!0.60!8.29!NR2F2;;chr1:200379104..200379128,-!p2@ZNF281!0.60!8.29!ZNF281;;chr5:139487608..139487663,+!p3@PURA!0.60!7.21!PURA;;chr3:71630690..71630750,-!p11@FOXP1!0.60!5.40!FOXP1;;chr15:96869292..96869320,+!p15@NR2F2!0.60!4.68!NR2F2;;chr5:137804357..137804390,+!p4@EGR1!0.60!3.60!EGR1;;chr12:77459306..77459365,-!p1@E2F7!0.59!44.32!E2F7;;chr15:96873984..96873999,+!p3@NR2F2!0.59!25.58!NR2F2;;chr5:321810..321877,+!p1@AHRR!0.59!10.81!AHRR;;chr3:178789622..178789633,-!p3@ZMAT3!0.59!6.13!ZMAT3;;chr17:7382834..7382855,-!p6@ZBTB4!0.59!5.40!ZBTB4;;chr17:59477403..59477414,+!p4@TBX2!0.59!2.88!TBX2;;chr8:72756380..72756427,-!p8@MSC!0.59!2.88!MSC;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.59!2.88!HOXC5;;chr19:46801639..46801699,+!p1@HIF3A!0.59!2.88!HIF3A;;chr1:170632250..170632277,+!p7@PRRX1!0.59!2.88!PRRX1;;chr3:141087339..141087387,+!p2@ZBTB38!0.58!34.95!ZBTB38;;chr14:62162285..62162296,+!p3@HIF1A!0.58!17.65!HIF1A;;chr21:30671690..30671762,+!p2@BACH1!0.58!11.17!BACH1;;chr17:59477233..59477263,+!p1@TBX2!0.58!10.09!TBX2;;chr2:113993052..113993097,-!p2@PAX8!0.58!7.21!PAX8;;chr15:96874216..96874236,+!p13@NR2F2!0.58!4.68!NR2F2;;chr19:31840130..31840160,-!p2@TSHZ3!0.58!4.68!TSHZ3;;chr2:46612334..46612349,+!p6@EPAS1!0.58!3.96!EPAS1;;chr3:178789566..178789620,-!p1@ZMAT3!0.57!59.81!ZMAT3;;chr10:77161504..77161530,-!p1@ZNF503!0.57!44.68!ZNF503;;chr2:46524506..46524514,+!p5@EPAS1!0.57!5.76!EPAS1;;chr20:50721803..50721857,-!p2@ZFP64!0.57!4.68!ZFP64;;chr2:200322654..200322707,-!p2@SATB2!0.57!4.32!SATB2;;chr16:73093174..73093209,-!p3@ZFHX3!0.57!3.96!ZFHX3;;chr4:57774042..57774114,+!p1@REST!0.56!79.99!REST;;chr8:116681123..116681143,-!p4@TRPS1!0.56!5.76!TRPS1;;chr3:101568349..101568365,+!p1@NFKBIZ!0.55!168.62!NFKBIZ;;chr18:77155922..77155939,+!p1@NFATC1!0.55!8.29!NFATC1;;chr15:96876966..96877017,+!p12@NR2F2!0.55!3.96!NR2F2;;chr12:26277929..26277955,-!p3@BHLHE41!0.55!3.96!BHLHE41;;chr17:59477275..59477286,+!p3@TBX2!0.55!3.60!TBX2;;chr5:137804405..137804444,+!p3@EGR1!0.55!3.24!EGR1;;chr7:150945865..150945896,-!p4@SMARCD3!0.55!2.52!SMARCD3;;chr17:7382810..7382822,-!p12@ZBTB4!0.55!2.52!ZBTB4;;chr1:170632683..170632696,+!p12@PRRX1!0.55!2.52!PRRX1;;chr21:38071403..38071428,+!p2@SIM2!0.55!2.52!SIM2;;chr21:38071462..38071474,+!p3@SIM2!0.55!2.52!SIM2;;chr11:125034605..125034636,+!p2@PKNOX2!0.55!2.52!PKNOX2;;chr22:38598086..38598105,+!p1@MAFF!0.54!33.51!MAFF;;chr5:92918919..92918942,+!p1@NR2F1!0.54!13.69!NR2F1;;chr7:137563945..137564001,-!p6@CREB3L2!0.54!6.85!CREB3L2;;chr3:71114115..71114126,-!p14@FOXP1!0.54!4.68!FOXP1;;chr2:208031943..208031978,-!p5@KLF7!0.54!3.60!KLF7;;chr12:54447599..54447630,+!p3@HOXC4!0.54!3.24!HOXC4;;chr8:72756637..72756664,-!p3@MSC!0.54!2.88!MSC;;chr10:111967345..111967422,+!p1@MX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| ||
Line 38: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/hepatic%2520mesenchymal%2520tumor%2520cell%2520line%253aLI90.CNhs11868.10778-110G4.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/hepatic%2520mesenchymal%2520tumor%2520cell%2520line%253aLI90.CNhs11868.10778-110G4.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.cell_line.hCAGE/hepatic%2520mesenchymal%2520tumor%2520cell%2520line%253aLI90.CNhs11868.10778-110G4.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/hepatic%2520mesenchymal%2520tumor%2520cell%2520line%253aLI90.CNhs11868.10778-110G4.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.cell_line.hCAGE/hepatic%2520mesenchymal%2520tumor%2520cell%2520line%253aLI90.CNhs11868.10778-110G4.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10778-110G4 | |id=FF:10778-110G4 | ||
|is_a=DOID:3350;;DOID:3571;;EFO:0002091;;FF:0000210;;FF:0103519 | |is_a=DOID:3350;;DOID:3571;;EFO:0002091;;FF:0000210;;FF:0103519 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11868 | |||
|library_id_phase_based=2:CNhs11868 | |||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10778 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10778 | |||
|name=hepatic mesenchymal tumor cell line:LI90 | |name=hepatic mesenchymal tumor cell line:LI90 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 46: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11868,LSID830,release010,COMPLETED | |profile_hcage=CNhs11868,LSID830,release010,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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Line 63: | Line 78: | ||
|rna_weight_ug=53.03574 | |rna_weight_ug=53.03574 | ||
|sample_age=55 | |sample_age=55 | ||
|sample_category=cell lines | |||
|sample_cell_catalog=jcrb0160 | |sample_cell_catalog=jcrb0160 | ||
|sample_cell_line=LI90 | |sample_cell_line=LI90 | ||
Line 84: | Line 100: | ||
|top_motifs=HMGA1,2:3.76196590613;HSF1,2:2.06734380158;NKX2-2,8:1.99129792399;DBP:1.76255558389;HOX{A5,B5}:1.75887129628;MYBL2:1.75715643244;NKX3-1:1.69518805962;GLI1..3:1.65570918873;SRF:1.65377988812;EVI1:1.65003229952;TAL1_TCF{3,4,12}:1.55692687205;ZNF384:1.52786853767;XBP1:1.48535379859;FOXL1:1.4745550671;NKX3-2:1.41297492481;TEAD1:1.41086019576;POU3F1..4:1.40289148501;UFEwm:1.36695684371;HES1:1.3106913589;NFATC1..3:1.25005789086;TP53:1.23871371415;HIF1A:1.20891988765;PPARG:1.20472233871;TFAP4:1.18210369883;TOPORS:1.16255813738;KLF4:1.16220255582;ESR1:1.14423427963;TEF:1.10600037866;ADNP_IRX_SIX_ZHX:1.09033347577;PRDM1:1.06604297768;PITX1..3:1.05627946714;AIRE:1.0466550324;ALX4:1.0159436299;NR6A1:1.00554082906;HAND1,2:0.994528025236;TFAP2B:0.935830946811;PAX4:0.932022557033;TFAP2{A,C}:0.897338848464;GATA4:0.855982510149;TBX4,5:0.854606493596;NR3C1:0.843030802716;MTE{core}:0.837976960831;HMX1:0.830293508879;XCPE1{core}:0.822912122543;GCM1,2:0.807043552686;LHX3,4:0.806747999174;AHR_ARNT_ARNT2:0.795372274385;FOXA2:0.792734001172;NFIX:0.785386278322;GTF2A1,2:0.776288564353;HIC1:0.737211120065;HBP1_HMGB_SSRP1_UBTF:0.719680193344;NFE2L1:0.697713794941;EN1,2:0.6922528888;VSX1,2:0.672469938833;TFCP2:0.660411937688;POU1F1:0.650997649753;POU6F1:0.641220278924;PAX3,7:0.639463060431;HOX{A6,A7,B6,B7}:0.636231442583;ATF6:0.615559971027;HOXA9_MEIS1:0.608026750703;RXRA_VDR{dimer}:0.606469394361;ZNF423:0.573907221565;SOX17:0.551018498489;ZBTB16:0.540688440568;TLX1..3_NFIC{dimer}:0.526632257217;PAX8:0.521792742598;GTF2I:0.489633955147;MAZ:0.477633783343;EBF1:0.476697657724;HLF:0.440596781514;ZFP161:0.430910460063;MEF2{A,B,C,D}:0.401221992715;MAFB:0.391555265731;NKX2-1,4:0.373082648565;SPZ1:0.347062494994;ZNF238:0.335007820292;GZF1:0.325192607916;PAX1,9:0.303897639047;ONECUT1,2:0.299354552911;PATZ1:0.298003946178;PAX6:0.290732650786;AR:0.269663455651;ZBTB6:0.2679944866;RXR{A,B,G}:0.226266879802;TBP:0.218898802716;POU5F1:0.186034180243;IKZF1:0.177457447939;NKX2-3_NKX2-5:0.170599894378;NFE2L2:0.17010611493;NANOG{mouse}:0.168888584941;HOX{A4,D4}:0.168412711625;EGR1..3:0.165136705357;FOXP1:0.164966858656;MTF1:0.164297790727;HNF1A:0.151517826657;PAX5:0.150457968843;CRX:0.14433940388;STAT2,4,6:0.123579656547;MZF1:0.122369207561;ZIC1..3:0.117329622316;FOXD3:0.108977103587;MYFfamily:0.101939165735;MED-1{core}:0.0973765322709;ARID5B:0.0824113015667;REST:0.0498803753622;SMAD1..7,9:-0.00755929373947;ALX1:-0.00837014714901;JUN:-0.0359841183937;GFI1B:-0.0536466512155;IRF1,2:-0.0540322354737;LEF1_TCF7_TCF7L1,2:-0.0793101936501;TFDP1:-0.0834395637117;BACH2:-0.116437973931;SOX5:-0.130305798091;CREB1:-0.141613066063;ATF2:-0.148135945091;SP1:-0.14933392401;FOSL2:-0.163570394816;FOX{I1,J2}:-0.166162389499;FOS_FOS{B,L1}_JUN{B,D}:-0.173571849646;BPTF:-0.175621858963;NFKB1_REL_RELA:-0.179745619658;FOX{D1,D2}:-0.182088879385;NFE2:-0.198120048449;ZNF148:-0.218076823364;RUNX1..3:-0.265196973663;SOX2:-0.270475244873;IKZF2:-0.316337166908;CDC5L:-0.366252438561;GATA6:-0.368199993472;FOXP3:-0.408504751695;RORA:-0.415135298342;FOXN1:-0.42103772659;RREB1:-0.426423684442;ATF5_CREB3:-0.438534697321;STAT5{A,B}:-0.457167971486;ETS1,2:-0.475119253418;HNF4A_NR2F1,2:-0.487777695584;TLX2:-0.489031514798;RFX1:-0.490214721277;SPI1:-0.504776597526;PAX2:-0.507169879223;FOXO1,3,4:-0.519461372491;MYB:-0.530990010155;T:-0.530998814805;LMO2:-0.536557756278;FOXM1:-0.539508290361;TGIF1:-0.550916936802;FOX{F1,F2,J1}:-0.551359737215;CEBPA,B_DDIT3:-0.562581130981;CDX1,2,4:-0.583505355373;ELK1,4_GABP{A,B1}:-0.586001734698;PRRX1,2:-0.619115595645;ZNF143:-0.620357478063;SNAI1..3:-0.628929370991;SOX{8,9,10}:-0.631129715879;NHLH1,2:-0.633452771093;SPIB:-0.635672444108;ATF4:-0.640048882854;NKX6-1,2:-0.646450626685;IRF7:-0.660986070505;SREBF1,2:-0.708126616963;bHLH_family:-0.709845442741;BREu{core}:-0.721527325232;NRF1:-0.727179452218;DMAP1_NCOR{1,2}_SMARC:-0.772616495001;NANOG:-0.7814370945;NFIL3:-0.798540423309;ELF1,2,4:-0.821910977783;NR5A1,2:-0.886395514945;CUX2:-0.889119166655;E2F1..5:-0.940853171693;OCT4_SOX2{dimer}:-0.944220300395;ZEB1:-0.952055612191;POU2F1..3:-1.03873936586;NR1H4:-1.12803760214;RFX2..5_RFXANK_RFXAP:-1.13864024044;FOXQ1:-1.17636548402;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.20349448128;ESRRA:-1.23291448547;STAT1,3:-1.30562595952;NFY{A,B,C}:-1.33146922956;GFI1:-1.34367062905;YY1:-1.3537394608;EP300:-1.3652038981;PBX1:-1.38019152604;RBPJ:-1.52949365034;MYOD1:-1.82606482068;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.86652837228;PDX1:-1.88791334949 | |top_motifs=HMGA1,2:3.76196590613;HSF1,2:2.06734380158;NKX2-2,8:1.99129792399;DBP:1.76255558389;HOX{A5,B5}:1.75887129628;MYBL2:1.75715643244;NKX3-1:1.69518805962;GLI1..3:1.65570918873;SRF:1.65377988812;EVI1:1.65003229952;TAL1_TCF{3,4,12}:1.55692687205;ZNF384:1.52786853767;XBP1:1.48535379859;FOXL1:1.4745550671;NKX3-2:1.41297492481;TEAD1:1.41086019576;POU3F1..4:1.40289148501;UFEwm:1.36695684371;HES1:1.3106913589;NFATC1..3:1.25005789086;TP53:1.23871371415;HIF1A:1.20891988765;PPARG:1.20472233871;TFAP4:1.18210369883;TOPORS:1.16255813738;KLF4:1.16220255582;ESR1:1.14423427963;TEF:1.10600037866;ADNP_IRX_SIX_ZHX:1.09033347577;PRDM1:1.06604297768;PITX1..3:1.05627946714;AIRE:1.0466550324;ALX4:1.0159436299;NR6A1:1.00554082906;HAND1,2:0.994528025236;TFAP2B:0.935830946811;PAX4:0.932022557033;TFAP2{A,C}:0.897338848464;GATA4:0.855982510149;TBX4,5:0.854606493596;NR3C1:0.843030802716;MTE{core}:0.837976960831;HMX1:0.830293508879;XCPE1{core}:0.822912122543;GCM1,2:0.807043552686;LHX3,4:0.806747999174;AHR_ARNT_ARNT2:0.795372274385;FOXA2:0.792734001172;NFIX:0.785386278322;GTF2A1,2:0.776288564353;HIC1:0.737211120065;HBP1_HMGB_SSRP1_UBTF:0.719680193344;NFE2L1:0.697713794941;EN1,2:0.6922528888;VSX1,2:0.672469938833;TFCP2:0.660411937688;POU1F1:0.650997649753;POU6F1:0.641220278924;PAX3,7:0.639463060431;HOX{A6,A7,B6,B7}:0.636231442583;ATF6:0.615559971027;HOXA9_MEIS1:0.608026750703;RXRA_VDR{dimer}:0.606469394361;ZNF423:0.573907221565;SOX17:0.551018498489;ZBTB16:0.540688440568;TLX1..3_NFIC{dimer}:0.526632257217;PAX8:0.521792742598;GTF2I:0.489633955147;MAZ:0.477633783343;EBF1:0.476697657724;HLF:0.440596781514;ZFP161:0.430910460063;MEF2{A,B,C,D}:0.401221992715;MAFB:0.391555265731;NKX2-1,4:0.373082648565;SPZ1:0.347062494994;ZNF238:0.335007820292;GZF1:0.325192607916;PAX1,9:0.303897639047;ONECUT1,2:0.299354552911;PATZ1:0.298003946178;PAX6:0.290732650786;AR:0.269663455651;ZBTB6:0.2679944866;RXR{A,B,G}:0.226266879802;TBP:0.218898802716;POU5F1:0.186034180243;IKZF1:0.177457447939;NKX2-3_NKX2-5:0.170599894378;NFE2L2:0.17010611493;NANOG{mouse}:0.168888584941;HOX{A4,D4}:0.168412711625;EGR1..3:0.165136705357;FOXP1:0.164966858656;MTF1:0.164297790727;HNF1A:0.151517826657;PAX5:0.150457968843;CRX:0.14433940388;STAT2,4,6:0.123579656547;MZF1:0.122369207561;ZIC1..3:0.117329622316;FOXD3:0.108977103587;MYFfamily:0.101939165735;MED-1{core}:0.0973765322709;ARID5B:0.0824113015667;REST:0.0498803753622;SMAD1..7,9:-0.00755929373947;ALX1:-0.00837014714901;JUN:-0.0359841183937;GFI1B:-0.0536466512155;IRF1,2:-0.0540322354737;LEF1_TCF7_TCF7L1,2:-0.0793101936501;TFDP1:-0.0834395637117;BACH2:-0.116437973931;SOX5:-0.130305798091;CREB1:-0.141613066063;ATF2:-0.148135945091;SP1:-0.14933392401;FOSL2:-0.163570394816;FOX{I1,J2}:-0.166162389499;FOS_FOS{B,L1}_JUN{B,D}:-0.173571849646;BPTF:-0.175621858963;NFKB1_REL_RELA:-0.179745619658;FOX{D1,D2}:-0.182088879385;NFE2:-0.198120048449;ZNF148:-0.218076823364;RUNX1..3:-0.265196973663;SOX2:-0.270475244873;IKZF2:-0.316337166908;CDC5L:-0.366252438561;GATA6:-0.368199993472;FOXP3:-0.408504751695;RORA:-0.415135298342;FOXN1:-0.42103772659;RREB1:-0.426423684442;ATF5_CREB3:-0.438534697321;STAT5{A,B}:-0.457167971486;ETS1,2:-0.475119253418;HNF4A_NR2F1,2:-0.487777695584;TLX2:-0.489031514798;RFX1:-0.490214721277;SPI1:-0.504776597526;PAX2:-0.507169879223;FOXO1,3,4:-0.519461372491;MYB:-0.530990010155;T:-0.530998814805;LMO2:-0.536557756278;FOXM1:-0.539508290361;TGIF1:-0.550916936802;FOX{F1,F2,J1}:-0.551359737215;CEBPA,B_DDIT3:-0.562581130981;CDX1,2,4:-0.583505355373;ELK1,4_GABP{A,B1}:-0.586001734698;PRRX1,2:-0.619115595645;ZNF143:-0.620357478063;SNAI1..3:-0.628929370991;SOX{8,9,10}:-0.631129715879;NHLH1,2:-0.633452771093;SPIB:-0.635672444108;ATF4:-0.640048882854;NKX6-1,2:-0.646450626685;IRF7:-0.660986070505;SREBF1,2:-0.708126616963;bHLH_family:-0.709845442741;BREu{core}:-0.721527325232;NRF1:-0.727179452218;DMAP1_NCOR{1,2}_SMARC:-0.772616495001;NANOG:-0.7814370945;NFIL3:-0.798540423309;ELF1,2,4:-0.821910977783;NR5A1,2:-0.886395514945;CUX2:-0.889119166655;E2F1..5:-0.940853171693;OCT4_SOX2{dimer}:-0.944220300395;ZEB1:-0.952055612191;POU2F1..3:-1.03873936586;NR1H4:-1.12803760214;RFX2..5_RFXANK_RFXAP:-1.13864024044;FOXQ1:-1.17636548402;RXR{A,B,G}_{NR1H2,PPAR}dimers:-1.20349448128;ESRRA:-1.23291448547;STAT1,3:-1.30562595952;NFY{A,B,C}:-1.33146922956;GFI1:-1.34367062905;YY1:-1.3537394608;EP300:-1.3652038981;PBX1:-1.38019152604;RBPJ:-1.52949365034;MYOD1:-1.82606482068;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-1.86652837228;PDX1:-1.88791334949 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10778-110G4;search_select_hide=table117:FF:10778-110G4 | |||
}} | }} |
Latest revision as of 15:04, 3 June 2020
Name: | hepatic mesenchymal tumor cell line:LI90 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11868 |
Sample type: | cell lines |
Genomic View: | UCSC |
RefEX: | Specific genes |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11868
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11868
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.797 |
10 | 10 | 0.69 |
100 | 100 | 0.499 |
101 | 101 | 0.631 |
102 | 102 | 0.133 |
103 | 103 | 0.449 |
104 | 104 | 0.564 |
105 | 105 | 0.28 |
106 | 106 | 0.00377 |
107 | 107 | 0.00916 |
108 | 108 | 0.423 |
109 | 109 | 0.813 |
11 | 11 | 0.575 |
110 | 110 | 0.468 |
111 | 111 | 0.604 |
112 | 112 | 0.429 |
113 | 113 | 0.553 |
114 | 114 | 0.214 |
115 | 115 | 0.239 |
116 | 116 | 0.0206 |
117 | 117 | 0.261 |
118 | 118 | 0.757 |
119 | 119 | 0.0893 |
12 | 12 | 0.138 |
120 | 120 | 0.402 |
121 | 121 | 0.443 |
122 | 122 | 0.142 |
123 | 123 | 0.941 |
124 | 124 | 0.655 |
125 | 125 | 0.875 |
126 | 126 | 0.632 |
127 | 127 | 0.938 |
128 | 128 | 0.0527 |
129 | 129 | 0.352 |
13 | 13 | 0.0822 |
130 | 130 | 0.508 |
131 | 131 | 0.188 |
132 | 132 | 0.517 |
133 | 133 | 0.932 |
134 | 134 | 0.637 |
135 | 135 | 0.429 |
136 | 136 | 0.379 |
137 | 137 | 0.473 |
138 | 138 | 0.736 |
139 | 139 | 0.034 |
14 | 14 | 0.311 |
140 | 140 | 0.476 |
141 | 141 | 0.566 |
142 | 142 | 0.712 |
143 | 143 | 0.75 |
144 | 144 | 0.509 |
145 | 145 | 0.812 |
146 | 146 | 0.269 |
147 | 147 | 0.135 |
148 | 148 | 0.938 |
149 | 149 | 0.00502 |
15 | 15 | 0.692 |
150 | 150 | 0.0609 |
151 | 151 | 0.468 |
152 | 152 | 0.0338 |
153 | 153 | 0.63 |
154 | 154 | 0.354 |
155 | 155 | 0.0467 |
156 | 156 | 0.415 |
157 | 157 | 0.532 |
158 | 158 | 0.13 |
159 | 159 | 0.461 |
16 | 16 | 0.0937 |
160 | 160 | 0.655 |
161 | 161 | 0.978 |
162 | 162 | 0.864 |
163 | 163 | 0.551 |
164 | 164 | 0.0466 |
165 | 165 | 0.591 |
166 | 166 | 0.037 |
167 | 167 | 0.911 |
168 | 168 | 0.482 |
169 | 169 | 0.405 |
17 | 17 | 0.271 |
18 | 18 | 0.24 |
19 | 19 | 0.0761 |
2 | 2 | 0.161 |
20 | 20 | 0.403 |
21 | 21 | 0.421 |
22 | 22 | 0.637 |
23 | 23 | 0.005 |
24 | 24 | 0.316 |
25 | 25 | 0.139 |
26 | 26 | 0.498 |
27 | 27 | 0.974 |
28 | 28 | 0.416 |
29 | 29 | 0.465 |
3 | 3 | 0.545 |
30 | 30 | 0.724 |
31 | 31 | 0.392 |
32 | 32 | 2.84197e-14 |
33 | 33 | 0.183 |
34 | 34 | 0.674 |
35 | 35 | 0.921 |
36 | 36 | 0.0814 |
37 | 37 | 0.781 |
38 | 38 | 0.81 |
39 | 39 | 0.523 |
4 | 4 | 0.679 |
40 | 40 | 0.181 |
41 | 41 | 0.955 |
42 | 42 | 0.64 |
43 | 43 | 0.479 |
44 | 44 | 0.704 |
45 | 45 | 0.937 |
46 | 46 | 0.183 |
47 | 47 | 0.672 |
48 | 48 | 0.672 |
49 | 49 | 0.426 |
5 | 5 | 0.172 |
50 | 50 | 0.636 |
51 | 51 | 0.94 |
52 | 52 | 0.263 |
53 | 53 | 0.858 |
54 | 54 | 0.401 |
55 | 55 | 0.168 |
56 | 56 | 0.853 |
57 | 57 | 0.226 |
58 | 58 | 0.538 |
59 | 59 | 0.389 |
6 | 6 | 0.462 |
60 | 60 | 0.225 |
61 | 61 | 0.399 |
62 | 62 | 0.617 |
63 | 63 | 0.19 |
64 | 64 | 0.938 |
65 | 65 | 0.323 |
66 | 66 | 0.172 |
67 | 67 | 0.191 |
68 | 68 | 0.794 |
69 | 69 | 0.619 |
7 | 7 | 0.277 |
70 | 70 | 0.263 |
71 | 71 | 0.919 |
72 | 72 | 0.435 |
73 | 73 | 0.0756 |
74 | 74 | 0.0839 |
75 | 75 | 0.249 |
76 | 76 | 0.991 |
77 | 77 | 0.0684 |
78 | 78 | 0.988 |
79 | 79 | 0.0015 |
8 | 8 | 0.29 |
80 | 80 | 0.204 |
81 | 81 | 0.854 |
82 | 82 | 0.0927 |
83 | 83 | 0.592 |
84 | 84 | 0.789 |
85 | 85 | 9.40643e-4 |
86 | 86 | 0.916 |
87 | 87 | 0.832 |
88 | 88 | 0.608 |
89 | 89 | 0.352 |
9 | 9 | 0.778 |
90 | 90 | 0.452 |
91 | 91 | 0.538 |
92 | 92 | 0.0146 |
93 | 93 | 0.915 |
94 | 94 | 0.197 |
95 | 95 | 0.737 |
96 | 96 | 0.684 |
97 | 97 | 0.26 |
98 | 98 | 0.246 |
99 | 99 | 0.0192 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11868
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
DOID:3350 mesenchymal cell neoplasm
DOID:3571 liver cancer
EFO:0002091 biological replicate
FF:0000210 human sample
FF:0103519 LI90 cell sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
CL: Cell type
0000000 (cell), 0000000 (cell)
0000003 (native cell)
0000548 (animal cell)
0000151 (secretory cell)
0002320 (connective tissue cell)
0002371 (somatic cell)
0000499 (stromal cell)
0000327 (extracellular matrix secreting cell)
0000255 (eukaryotic cell)
0000057 (fibroblast)
0000632 (hepatic stellate cell)
DOID: Disease
4 (disease)
0050686 (organ system cancer)
162 (cancer)
14566 (disease of cellular proliferation)
0050687 (cell type cancer)
3119 (gastrointestinal system cancer)
3350 (mesenchymal cell neoplasm)
3571 (liver cancer)
UBERON: Anatomy
0000468 (multi-cellular organism)
0002107 (liver)
0002100 (trunk)
0002384 (connective tissue)
0000479 (tissue)
0001007 (digestive system)
0004119 (endoderm-derived structure)
0000062 (organ)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0000467 (anatomical system)
0001062 (anatomical entity)
0000480 (anatomical group)
0009569 (subdivision of trunk)
0002368 (endocrine gland)
0005177 (trunk region element)
0002365 (exocrine gland)
0005172 (abdomen element)
0006925 (digestive gland)
0002530 (gland)
0010317 (germ layer / neural crest derived structure)
0005173 (abdominal segment element)
0002417 (abdominal segment of trunk)
0000949 (endocrine system)
0002330 (exocrine system)
0000916 (abdomen)
0002423 (hepatobiliary system)
FF: FANTOM5
0000102 (sample by type)
0000003 (cell line sample)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0100224 (liver cell line sample)
0103513 (hepatic stellate cell line sample)
0103519 (LI90 cell sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
CL:0000134 (mesenchymal cell)
UBERON:0001041 (foregut)
UBERON:0002532 (epiblast (generic))
UBERON:0006595 (presumptive endoderm)
UBERON:0003104 (mesenchyme)
UBERON:0004161 (septum transversum)
UBERON:0009497 (epithelium of foregut-midgut junction)
UBERON:0010316 (germ layer / neural crest)