Personal tools

MCL coexpression mm9:3346: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
(Created page with "{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=}}")
 
No edit summary
 
(5 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{MCL_coexpression_mm9|gostat_on_MCL_coexpression=}}
{{MCL_coexpression_mm9|coexpression_dpi_cluster_scores_mean=0,0,0,0,0,0,0,1.17168905267184,0.249586802299421,0.170895671413675,0.232197337287106,0.108327318968322,0.207670116042545,0.0233263407091415,0.0739107396440567,0.135105290212719,0,0.228658572211338,0.186807983715883,0.102419206573911,0.0227393328203088,0.0891923168946259,0.0335946298219363,0.0214850507912259,0.0298988291256234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0418883661085143,0.683238830137026,0.672590459299886,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0105464367459272,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0156522902305435,0.560705545602741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0327642192596973,0,0.0173169925063769,0,0,0,0,0,0,0,0,0.0169745097646989,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0331518210781345,0,0,0,0,0,0,0,0,0,0.043476329953432,0,0,0,0,0,0.0182307002463379,0,0,0.0734423864836913,0,0,0,0,0,0,0,0.056217778832401,0,0.0324578881582755,0,0,0,0,0,0,0,0,0,0.0256623481908917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0801009229383543,0,0,0,0,0.0813597078864588,0,0.0258054912402382,0.0211905676183425,0,0.0214179370325552,0.0630035483524443,0,0,0,0,0,0.0636187716843317,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0388067186600497,0,0,0,0.0397560065439497,0,0,0,0,0,0,0,0,0,0,0.0557077704367297,0,0,0,0,0.0084780184573117,0,0.0220018491878135,0,0,0.204623334716169,0,0,0.0249837052527249,0.034986969408562,0.0298244961268902,0.0750956590076673,0.0736499123666447,0.0689507336322252,0,0,0,0.0148472845964615,0,0,0,0,0,0,0.139915942196074,0,0,0,0,0,0.0225994036878694,0,0,0,0,0,0.495245700126756,0.17732025856474,0.450791249880331,0.685352566595071,0.800037450631517,0.613132543921413,0.474923294482298,0.522614087772817,0.495738672169351,0.527960541954663,0.41817888796347,0.487173477570675,0.404987330969012,0.565597823245497,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0652307405184904,0.0327057221205027,0.0250151168385698,0,0.0254345822305801,0.015741531520527,0,0,0,0,0.052947932559101,0.0426779099732737,0,0,0.0196456204721173,0.0249654683955651,0.0235169662252587,0,0.0338091069434337,0.0184344791169644,0,0,0.0136006111234406,0,0.0417054900485534,0.0255354818037453,0,0,0,0,0,0|coexpression_dpi_cluster_scores_median=0,0,0,0,0,0,0,1.17824125248717,0.297874496813457,0.0913378685245542,0.226566880277176,0.0333321253665857,0.226549106464441,0,0,0.147661033956106,0,0.212433811736393,0.105247439647798,0.153628809860867,0,0.113232148794519,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.783727468163968,0.701837767320913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.449102596679598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0491463288895459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0672592169170953,0,0,0,0,0,0.0659019793256198,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179727725901961,0,0,0,0,0,0,0.056886356216389,0.0562185712770556,0,0,0,0,0,0,0,0,0,0,0.209873913294111,0,0,0,0,0,0,0,0,0,0,0,0.461808563544067,0.147815532899656,0.348797592572923,0.586391277234756,0.752409115049715,0.696673220342184,0.516365263842763,0.580480310552908,0.400451078495117,0.599016397045127,0.344375416766336,0.391264800534538,0.387955042324043,0.552825342434304,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0978461107777356,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0352754493378881,0,0,0,0,0,0,0,0.0625582350728301,0,0,0,0,0,0,0|gostat_on_MCL_coexpression=|ontology_enrichment_celltype=CL:0000084!9.78e-17!11;CL:0000827!9.78e-17!11;CL:0000791!1.19e-16!9;CL:0000789!1.19e-16!9;CL:0002420!1.19e-16!9;CL:0002419!1.19e-16!9;CL:0000790!1.19e-16!9;CL:0000838!3.38e-15!12;CL:0000624!2.97e-14!8;CL:0000542!6.77e-14!13;CL:0000051!6.77e-14!13;CL:0002031!1.31e-13!25;CL:0000988!1.28e-11!32;CL:0002032!1.28e-11!32;CL:0000037!1.28e-11!32;CL:0000566!1.28e-11!32;CL:0000837!1.28e-11!32;CL:0002242!5.73e-11!16;CL:0000738!3.19e-10!17;CL:0002087!3.19e-10!17;CL:0000893!1.83e-09!6;CL:0002489!1.83e-09!6;CL:0000898!1.83e-09!6;CL:0000809!1.83e-09!6;CL:0000810!1.83e-09!6;CL:0000895!1.83e-09!6;CL:0000808!1.83e-09!6;CL:0000894!1.83e-09!6;CL:0000806!1.83e-09!6;CL:0000807!1.83e-09!6;CL:0000805!1.83e-09!6;CL:0002425!1.83e-09!6;CL:0002436!1.83e-09!6;CL:0002427!1.83e-09!6;CL:0002428!1.83e-09!6;CL:0002429!1.83e-09!6;CL:0002433!1.83e-09!6;CL:0002431!1.83e-09!6;CL:0002432!1.83e-09!6;CL:0002320!3.63e-07!46;CL:0000134!3.63e-07!46|ontology_enrichment_disease=|ontology_enrichment_uberon=UBERON:0003408!8.49e-38!24;UBERON:0002370!1.12e-35!23;UBERON:0000974!1.12e-35!23;UBERON:0004807!1.12e-35!23;UBERON:0005058!1.12e-35!23;UBERON:0003351!1.12e-35!23;UBERON:0009113!1.12e-35!23;UBERON:0003295!1.12e-35!23;UBERON:0009722!1.12e-35!23;UBERON:0005562!1.12e-35!23;UBERON:0007690!1.12e-35!23;UBERON:0006562!5.36e-34!24;UBERON:0001557!5.36e-34!24;UBERON:0001042!5.36e-34!24;UBERON:0008814!5.36e-34!24;UBERON:0009145!5.36e-34!24;UBERON:0004177!2.03e-30!29;UBERON:0005057!2.03e-30!29;UBERON:0000072!1.06e-29!27;UBERON:0002193!5.19e-27!48;UBERON:0002405!5.19e-27!48;UBERON:0002390!1.43e-26!45;UBERON:0003061!1.43e-26!45;UBERON:0000077!2.30e-24!35;UBERON:0001004!8.73e-24!42;UBERON:0007811!1.45e-23!36;UBERON:0000065!4.00e-22!41;UBERON:0000063!7.58e-22!35;UBERON:0000153!6.15e-19!43;UBERON:0003929!3.10e-12!55;UBERON:0001041!3.57e-11!80;UBERON:0005911!4.07e-11!69;UBERON:0003081!5.13e-11!87;UBERON:0002530!6.56e-11!65;UBERON:0002368!7.67e-11!60;UBERON:0000490!1.88e-09!66;UBERON:0000949!2.67e-08!72;UBERON:0002384!3.63e-07!46|tfbs_overrepresentation_for_novel_motifs=0.752782,1.07244,0.722405,0.801166,0.587814,0.81763,0.919454,0.467321,0.479531,0.235304,0.870507,0.906098,0.467629,0.933025,0.608226,0,1.14208,1.41496,0.448066,0.328717,0.679146,0.275782,0.932027,0.585919,0.731217,0.963352,0.437236,0.841386,1.55113,0.380786,0.825437,1.24901,1.40911,0.411696,0.608816,0.144706,0.563758,0.902078,0.536514,0.50014,0.582863,0.831295,0.261619,0.610669,0.474221,0.788421,1.05665,0.859154,0.663409,0.646474,1.12346,0.99279,0.371606,1.3966,1.41464,0.940919,0.657156,0.891887,1.91135,0.938668,1.22795,1.00308,1.23806,1.11142,0.953187,1.15459,1.55483,1.90983,1.22303,1.7608,0.700291,0.474956,0.284975,1.44925,0.416814,1.03818,0.411601,1.04436,1.20986,0.684144,0.476502,1.16055,1.00151,0.459035,1.32978,0.181575,0.195254,0.380977,1.06194,2.07346,1.62608,1.33496,1.26245,0.595071,0.531443,1.26911,0.464141,1.26539,1.05692,0.352122,0.563856,1.24872,1.37854,1.12409,1.12297,0.830796,1.18646,0.854628,0.689894,0.681267,0.744607,1.38039,0.685481,0.876299,1.63327,0.580657,0.212464,0.805461,1.14346,0.559153,1.45481,1.08896,0.965352,1.04338,1.68841,1.21376,0.928483,1.25534,1.55328,0.598722,1.36093,0.792832,1.52297,0.955954,1.65529,0.751419,0.762499,0.832891,1.60513,2.44352,2.04137,1.55966,0.978551,1.26,1.11604,0.831808,2.40807,2.40374,0.765221,0.589976,1.77018,0.260379,1.39822,0.516739,0.954936,1.48249,0.993889,2.56136,0.749933,0.762177,1.61484,1.32889,1.21423,0.741984,1.11251,0.94678,0.562367,0.904334,0.135528|tfbs_overrepresentation_jaspar=MA0003.1;0.0699972,MA0004.1;0.801718,MA0006.1;0.60285,MA0007.1;0.784593,MA0009.1;1.27673,MA0014.1;0.133574,MA0017.1;0.635031,MA0019.1;1.08369,MA0024.1;1.23079,MA0025.1;1.51835,MA0027.1;2.9431,MA0028.1;0.61552,MA0029.1;1.20789,MA0030.1;1.21482,MA0031.1;1.17722,MA0038.1;0.963265,MA0040.1;1.28983,MA0041.1;0.714279,MA0042.1;0.69885,MA0043.1;1.3775,MA0046.1;1.31428,MA0048.1;1.66457,MA0050.1;0.845669,MA0051.1;0.973068,MA0052.1;1.29825,MA0055.1;0.190475,MA0056.1;0,MA0057.1;0.337566,MA0058.1;0.690848,MA0059.1;0.705317,MA0060.1;0.502699,MA0061.1;3.37324,MA0063.1;0,MA0066.1;0.951196,MA0067.1;1.63197,MA0068.1;0.343188,MA0069.1;1.29861,MA0070.1;1.28847,MA0071.1;0.844726,MA0072.1;1.2796,MA0073.1;0.00834468,MA0074.1;0.911576,MA0076.1;0.657929,MA0077.1;1.2569,MA0078.1;1.0091,MA0081.1;0.732313,MA0083.1;1.37668,MA0084.1;1.96428,MA0087.1;1.33189,MA0088.1;0.27999,MA0089.1;0,MA0090.1;0.762482,MA0091.1;0.816659,MA0092.1;3.00661,MA0093.1;0.62555,MA0095.1;0,MA0098.1;0,MA0100.1;0.89873,MA0101.1;1.70277,MA0103.1;1.56167,MA0105.1;2.75918,MA0106.1;1.01755,MA0107.1;1.54626,MA0108.2;1.10817,MA0109.1;0,MA0111.1;0.778753,MA0113.1;0.986839,MA0114.1;0.537669,MA0115.1;1.38041,MA0116.1;1.46662,MA0117.1;1.34691,MA0119.1;0.716476,MA0122.1;1.36752,MA0124.1;1.57762,MA0125.1;1.5017,MA0130.1;0,MA0131.1;1.07881,MA0132.1;0,MA0133.1;0,MA0135.1;1.4152,MA0136.1;0.933582,MA0139.1;0.462282,MA0140.1;0.898603,MA0141.1;0.671467,MA0142.1;1.16183,MA0143.1;1.00467,MA0144.1;0.541532,MA0145.1;0.292366,MA0146.1;0.151124,MA0147.1;0.556853,MA0148.1;0.820161,MA0149.1;0.722227,MA0062.2;0.412742,MA0035.2;0.903829,MA0039.2;0.181475,MA0138.2;1.07027,MA0002.2;1.17677,MA0137.2;0.668025,MA0104.2;0.48458,MA0047.2;0.962424,MA0112.2;0.29236,MA0065.2;0.292912,MA0150.1;3.07458,MA0151.1;0,MA0152.1;0.962542,MA0153.1;1.43238,MA0154.1;0.925147,MA0155.1;0.312898,MA0156.1;0.656895,MA0157.1;1.12772,MA0158.1;0,MA0159.1;0.569393,MA0160.1;0.823568,MA0161.1;0,MA0162.1;0.166722,MA0163.1;0.477233,MA0164.1;2.15144,MA0080.2;0.64167,MA0018.2;0.944669,MA0099.2;1.06348,MA0079.2;0.00137444,MA0102.2;2.01714,MA0258.1;0.520639,MA0259.1;0.543506,MA0442.1;0}}

Latest revision as of 19:57, 17 September 2013


Phase1 CAGE Peaks

 Short description
Mm9::chr2:34814232..34814263,-p9@Traf1
Mm9::chr3:101101404..101101429,+p@chr3:101101404..101101429
+
Mm9::chr3:101101446..101101459,+p@chr3:101101446..101101459
+


Enriched pathways on this co-expression cluster<b>Summary:</b><br>Canonical pathway gene sets were compiled from Reactome, Wikipathways and KEGG. For the major signaling pathways, the transcriptionally-regulated genes (downstream targets) were obtained from Netpath. Combined, the canonical pathways and downstream targets totaled 489 human gene sets. The corresponding M. musculus gene sets were inferred by homology using the HomoloGene database. Enrichment for each of the canonical 489 pathways and gene sets included in the co-expression cluster was assessed by the hypergeometric probability. The resulting P values were also then adjusted by the Benjamini-Hochberg method for multiple comparisons.<br><b>Analyst: </b>Emmanuel Dimont<br><br>link to source dataset<br>data

no results for this coexpression

Relative expression of the co-expression cluster over median <br>Analyst:




Enriched sample ontology terms on this co-expression cluster<b>Summary:</b>To summarize promoter activities (expression profile of a TSS region) across ~1000 samples, we performed enrichment analysis based on FANTOM5 Sample Ontology (FF ontology). The question here is “in which type of samples the promoter is more active”. To answer this question, we compared expressions (TPMs) in the samples associated with a sample ontology term and the rest of the samples by using the Mann-Whitney rank sum test. To summarize ontologies enriched in this co-expression cluster, we ran the same analysis on an averaged expression profile of all promoters that make up. <b>Analyst:</b> Hideya Kawaji <br><br>links to source dataset<br><br>cell_data<br>uberon_data<br><br>

Cell Type
Ontology termp-valuen
T cell9.78e-1711
pro-T cell9.78e-1711
mature alpha-beta T cell1.19e-169
alpha-beta T cell1.19e-169
immature T cell1.19e-169
mature T cell1.19e-169
immature alpha-beta T cell1.19e-169
lymphoid lineage restricted progenitor cell3.38e-1512
CD4-positive, alpha-beta T cell2.97e-148
lymphocyte6.77e-1413
common lymphoid progenitor6.77e-1413
hematopoietic lineage restricted progenitor cell1.31e-1325
hematopoietic cell1.28e-1132
hematopoietic oligopotent progenitor cell1.28e-1132
hematopoietic stem cell1.28e-1132
angioblastic mesenchymal cell1.28e-1132
hematopoietic multipotent progenitor cell1.28e-1132
nucleate cell5.73e-1116
leukocyte3.19e-1017
nongranular leukocyte3.19e-1017
thymocyte1.83e-096
double negative thymocyte1.83e-096
naive T cell1.83e-096
double-positive, alpha-beta thymocyte1.83e-096
CD4-positive, alpha-beta thymocyte1.83e-096
naive thymus-derived CD4-positive, alpha-beta T cell1.83e-096
DN4 thymocyte1.83e-096
DN1 thymic pro-T cell1.83e-096
DN2 thymocyte1.83e-096
DN3 thymocyte1.83e-096
immature single positive thymocyte1.83e-096
early T lineage precursor1.83e-096
mature CD4 single-positive thymocyte1.83e-096
resting double-positive thymocyte1.83e-096
double-positive blast1.83e-096
CD69-positive double-positive thymocyte1.83e-096
CD69-positive, CD4-positive single-positive thymocyte1.83e-096
CD4-positive, CD8-intermediate double-positive thymocyte1.83e-096
CD24-positive, CD4 single-positive thymocyte1.83e-096
connective tissue cell3.63e-0746
mesenchymal cell3.63e-0746

Uber Anatomy
Ontology termp-valuen
gland of gut8.49e-3824
thymus1.12e-3523
neck1.12e-3523
respiratory system epithelium1.12e-3523
hemolymphoid system gland1.12e-3523
pharyngeal epithelium1.12e-3523
thymic region1.12e-3523
pharyngeal gland1.12e-3523
entire pharyngeal arch endoderm1.12e-3523
thymus primordium1.12e-3523
early pharyngeal endoderm1.12e-3523
pharynx5.36e-3424
upper respiratory tract5.36e-3424
chordate pharynx5.36e-3424
pharyngeal arch system5.36e-3424
pharyngeal region of foregut5.36e-3424
hemopoietic organ2.03e-3029
immune organ2.03e-3029
segment of respiratory tract1.06e-2927
hemolymphoid system5.19e-2748
immune system5.19e-2748
hematopoietic system1.43e-2645
blood island1.43e-2645
mixed endoderm/mesoderm-derived structure2.30e-2435
respiratory system8.73e-2442
craniocervical region1.45e-2336
respiratory tract4.00e-2241
organ segment7.58e-2235
anterior region of body6.15e-1943
gut epithelium3.10e-1255
foregut3.57e-1180
endo-epithelium4.07e-1169
lateral plate mesoderm5.13e-1187
gland6.56e-1165
endocrine gland7.67e-1160
unilaminar epithelium1.88e-0966
endocrine system2.67e-0872
connective tissue3.63e-0746


TFBS overrepresentation<b>Summary:</b>The values shown are the p-values for overrepresentation of the motif in this coexpression cluster. So a small p-value means a strong overrepresentation. <b>Analyst:</b> Michiel de Hoon <br><br>link to source data <br> Novel motifs <br>data <br><br> Jaspar motifs <br>data

Novel motifs




JASPAR motifs


Motifs-log10(p-value)
MA0003.10.0699972
MA0004.10.801718
MA0006.10.60285
MA0007.10.784593
MA0009.11.27673
MA0014.10.133574
MA0017.10.635031
MA0019.11.08369
MA0024.11.23079
MA0025.11.51835
MA0027.12.9431
MA0028.10.61552
MA0029.11.20789
MA0030.11.21482
MA0031.11.17722
MA0038.10.963265
MA0040.11.28983
MA0041.10.714279
MA0042.10.69885
MA0043.11.3775
MA0046.11.31428
MA0048.11.66457
MA0050.10.845669
MA0051.10.973068
MA0052.11.29825
MA0055.10.190475
MA0056.10
MA0057.10.337566
MA0058.10.690848
MA0059.10.705317
MA0060.10.502699
MA0061.13.37324
MA0063.10
MA0066.10.951196
MA0067.11.63197
MA0068.10.343188
MA0069.11.29861
MA0070.11.28847
MA0071.10.844726
MA0072.11.2796
MA0073.10.00834468
MA0074.10.911576
MA0076.10.657929
MA0077.11.2569
MA0078.11.0091
MA0081.10.732313
MA0083.11.37668
MA0084.11.96428
MA0087.11.33189
MA0088.10.27999
MA0089.10
MA0090.10.762482
MA0091.10.816659
MA0092.13.00661
MA0093.10.62555
MA0095.10
MA0098.10
MA0100.10.89873
MA0101.11.70277
MA0103.11.56167
MA0105.12.75918
MA0106.11.01755
MA0107.11.54626
MA0108.21.10817
MA0109.10
MA0111.10.778753
MA0113.10.986839
MA0114.10.537669
MA0115.11.38041
MA0116.11.46662
MA0117.11.34691
MA0119.10.716476
MA0122.11.36752
MA0124.11.57762
MA0125.11.5017
MA0130.10
MA0131.11.07881
MA0132.10
MA0133.10
MA0135.11.4152
MA0136.10.933582
MA0139.10.462282
MA0140.10.898603
MA0141.10.671467
MA0142.11.16183
MA0143.11.00467
MA0144.10.541532
MA0145.10.292366
MA0146.10.151124
MA0147.10.556853
MA0148.10.820161
MA0149.10.722227
MA0062.20.412742
MA0035.20.903829
MA0039.20.181475
MA0138.21.07027
MA0002.21.17677
MA0137.20.668025
MA0104.20.48458
MA0047.20.962424
MA0112.20.29236
MA0065.20.292912
MA0150.13.07458
MA0151.10
MA0152.10.962542
MA0153.11.43238
MA0154.10.925147
MA0155.10.312898
MA0156.10.656895
MA0157.11.12772
MA0158.10
MA0159.10.569393
MA0160.10.823568
MA0161.10
MA0162.10.166722
MA0163.10.477233
MA0164.12.15144
MA0080.20.64167
MA0018.20.944669
MA0099.21.06348
MA0079.20.00137444
MA0102.22.01714
MA0258.10.520639
MA0259.10.543506
MA0442.10
Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=MCL_coexpression_mm9:3346&oldid=3075345"